Wall clock time and date at job start Tue Mar 31 2020 21:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.99725 * 2 1 4 4 C 1.54322 * 109.88493 * 238.89240 * 2 1 3 5 5 H 1.08993 * 110.72254 * 336.93763 * 4 2 1 6 6 N 1.46507 * 110.71583 * 100.02958 * 4 2 1 7 7 C 1.34771 * 119.99844 * 205.00128 * 6 4 2 8 8 O 1.21283 * 120.00310 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99942 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47319 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.43184 * 305.09665 * 10 9 7 12 12 C 1.53067 * 109.43399 * 185.22724 * 10 9 7 13 13 C 1.53358 * 109.08242 * 180.52934 * 12 10 9 14 14 C 1.52842 * 108.74019 * 54.85004 * 13 12 10 15 15 C 1.53356 * 113.54780 * 77.72671 * 14 13 12 16 16 C 1.53850 * 86.95406 * 89.52083 * 15 14 13 17 17 C 1.53330 * 113.59184 * 175.70686 * 14 13 12 18 18 C 1.52756 * 112.68475 * 306.77518 * 14 13 12 19 19 O 1.42871 * 109.43092 * 64.99860 * 10 9 7 20 20 C 1.55151 * 102.94436 * 218.39232 * 4 2 1 21 21 C 1.54690 * 101.68017 * 35.33812 * 20 4 2 22 22 N 1.47026 * 109.87862 * 121.08998 * 2 1 3 23 23 C 1.36945 * 125.64697 * 298.32173 * 22 2 1 24 24 H 1.07997 * 119.99756 * 0.02562 * 23 22 2 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 2 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.09000 * 109.47234 * 300.36882 * 1 2 3 32 32 H 1.09003 * 109.46569 * 60.36870 * 1 2 3 33 33 H 1.09002 * 109.47295 * 180.35651 * 1 2 3 34 34 H 0.96999 * 119.99904 * 24.99871 * 6 4 2 35 35 H 1.09002 * 109.46765 * 299.99898 * 9 7 6 36 36 H 1.08998 * 109.46908 * 59.99465 * 9 7 6 37 37 H 1.08997 * 109.54117 * 300.40875 * 12 10 9 38 38 H 1.09002 * 109.53641 * 60.65195 * 12 10 9 39 39 H 1.09000 * 109.59165 * 295.06645 * 13 12 10 40 40 H 1.09002 * 109.59190 * 174.62560 * 13 12 10 41 41 H 1.09007 * 113.63576 * 204.03597 * 15 14 13 42 42 H 1.09001 * 113.63366 * 335.00067 * 15 14 13 43 43 H 1.09001 * 113.59859 * 270.54124 * 16 15 14 44 44 H 1.09002 * 113.67973 * 139.68962 * 16 15 14 45 45 H 1.09002 * 113.63440 * 25.02977 * 17 14 13 46 46 H 1.08996 * 113.63913 * 156.00269 * 17 14 13 47 47 H 1.08996 * 109.52823 * 293.74617 * 18 14 13 48 48 H 1.09003 * 109.58078 * 173.57390 * 18 14 13 49 49 H 1.08994 * 111.00801 * 153.58000 * 20 4 2 50 50 H 1.09004 * 111.00485 * 277.39211 * 20 4 2 51 51 H 1.08993 * 110.39830 * 204.36603 * 21 20 4 52 52 H 1.09004 * 110.23623 * 82.10689 * 21 20 4 53 53 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7498 -1.2425 5 1 1.3041 -1.4439 -1.6199 6 7 2.4556 0.1958 -2.2875 7 6 2.4584 -0.1888 -3.5791 8 8 2.1296 -1.3177 -3.8765 9 6 2.8711 0.7836 -4.6539 10 6 2.7867 0.0999 -6.0201 11 1 3.3818 -0.8133 -6.0059 12 6 3.3290 1.0436 -7.0963 13 6 3.2285 0.3557 -8.4632 14 6 1.7819 -0.0842 -8.6863 15 6 0.8494 1.0617 -9.0977 16 6 1.2212 0.7320 -10.5538 17 6 1.5327 -0.6951 -10.0704 18 6 1.2396 -0.9309 -7.5363 19 8 1.4250 -0.2246 -6.3059 20 6 3.2876 -1.5144 -0.6920 21 6 2.8191 -1.8763 0.7371 22 7 2.0300 -0.7140 1.1840 23 6 1.8048 -0.3553 2.4864 24 1 1.2141 0.5204 2.7109 25 6 2.3350 -1.1180 3.5178 26 7 3.0546 -2.1857 3.2442 27 14 2.0285 -0.6284 5.2943 28 1 2.6969 -1.5991 6.1977 29 1 2.5765 0.7306 5.5348 30 1 0.5680 -0.6279 5.5627 31 1 -0.3634 0.5195 0.8867 32 1 -0.3632 0.5081 -0.8933 33 1 -0.3634 -1.0276 0.0064 34 1 2.7189 1.0985 -2.0496 35 1 2.2059 1.6470 -4.6376 36 1 3.8952 1.1105 -4.4743 37 1 2.7413 1.9615 -7.1061 38 1 4.3716 1.2792 -6.8827 39 1 3.8828 -0.5158 -8.4829 40 1 3.5230 1.0543 -9.2465 41 1 -0.1989 0.8781 -8.8620 42 1 1.1926 2.0432 -8.7705 43 1 2.0971 1.2720 -10.9134 44 1 0.3788 0.7851 -11.2434 45 1 2.4250 -1.1253 -10.5252 46 1 0.6737 -1.3651 -10.1043 47 1 1.7765 -1.8786 -7.4969 48 1 0.1774 -1.1201 -7.6912 49 1 3.4853 -2.4112 -1.2791 50 1 4.1656 -0.8692 -0.6607 51 1 3.6775 -2.0263 1.3917 52 1 2.1970 -2.7711 0.7147 53 1 3.4254 -2.7184 3.9651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088995708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:25 Heat of formation + Delta-G solvation = -67.489592 kcal Electronic energy + Delta-G solvation = -30024.769751 eV Core-core repulsion = 26089.336976 eV Total energy + Delta-G solvation = -3935.432775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.54872 -40.80521 -39.24105 -38.03076 -35.52005 -34.25021 -33.75181 -32.13703 -31.88769 -30.42929 -28.70753 -26.62385 -26.51532 -25.85756 -25.09518 -23.69714 -22.20857 -21.87065 -21.51507 -21.01474 -19.21835 -18.70526 -17.88665 -17.56790 -17.33003 -16.78730 -16.50118 -16.46372 -15.86202 -15.74933 -15.68204 -15.22014 -14.94341 -14.67033 -14.45366 -14.17225 -14.00179 -13.81033 -13.66597 -13.53164 -13.23775 -13.20089 -12.97093 -12.86140 -12.70575 -12.60719 -12.46682 -12.22677 -12.09830 -12.06578 -12.00120 -11.98898 -11.85047 -11.57147 -11.43295 -11.40897 -11.04049 -10.93806 -10.74108 -10.69310 -10.08419 -9.92655 -8.89548 -7.74165 -5.19236 1.48266 1.51443 1.57539 1.78593 2.21843 2.53546 2.86076 3.35970 3.56556 3.64068 3.66971 3.69964 3.82376 3.88120 3.91237 3.97601 4.00191 4.17375 4.19599 4.23067 4.34142 4.49418 4.49976 4.55646 4.62831 4.64169 4.69613 4.74489 4.76408 4.80505 4.82861 4.87534 4.91412 4.96311 4.97525 5.05988 5.07949 5.09770 5.13002 5.15773 5.19492 5.37382 5.38105 5.48485 5.50215 5.60064 5.60742 5.68402 5.80237 6.30697 6.39512 6.69467 7.11580 7.40642 7.79484 8.43497 9.27739 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.036660 B = 0.001994 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.594113 B =14035.663639 C =14173.610731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.054 0.946 4 C 0.153 3.847 5 H 0.072 0.928 6 N -0.709 5.709 7 C 0.509 3.491 8 O -0.579 6.579 9 C -0.126 4.126 10 C 0.103 3.897 11 H 0.042 0.958 12 C -0.141 4.141 13 C -0.095 4.095 14 C -0.119 4.119 15 C -0.124 4.124 16 C -0.134 4.134 17 C -0.130 4.130 18 C 0.077 3.923 19 O -0.390 6.390 20 C -0.137 4.137 21 C 0.158 3.842 22 N -0.614 5.614 23 C -0.227 4.227 24 H 0.085 0.915 25 C -0.071 4.071 26 N -0.952 5.952 27 Si 0.980 3.020 28 H -0.297 1.297 29 H -0.274 1.274 30 H -0.281 1.281 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.414 0.586 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.035 0.965 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.078 0.922 52 H -0.019 1.019 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 10.760 -28.215 30.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.072 0.928 4 C 0.047 3.953 5 H 0.090 0.910 6 N -0.361 5.361 7 C 0.298 3.702 8 O -0.458 6.458 9 C -0.166 4.166 10 C 0.045 3.955 11 H 0.060 0.940 12 C -0.178 4.178 13 C -0.133 4.133 14 C -0.120 4.120 15 C -0.162 4.162 16 C -0.171 4.171 17 C -0.168 4.168 18 C 0.000 4.000 19 O -0.309 6.309 20 C -0.177 4.177 21 C 0.032 3.968 22 N -0.339 5.339 23 C -0.356 4.356 24 H 0.103 0.897 25 C -0.263 4.263 26 N -0.601 5.601 27 Si 0.808 3.192 28 H -0.224 1.224 29 H -0.200 1.200 30 H -0.207 1.207 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.251 0.749 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.096 0.904 52 H -0.001 1.001 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.619 9.959 -28.096 29.815 hybrid contribution -0.081 -0.367 1.374 1.425 sum 0.537 9.591 -26.722 28.397 Atomic orbital electron populations 1.22117 0.96840 1.00485 1.01090 1.21210 0.93330 0.95174 0.85901 0.92813 1.21626 0.95955 0.90989 0.86736 0.91001 1.45897 1.68445 1.16210 1.05538 1.21276 0.76405 0.88869 0.83677 1.90693 1.49219 1.23146 1.82763 1.21834 1.06229 0.98228 0.90283 1.21822 0.83534 0.96788 0.93395 0.93980 1.22184 1.02845 0.98852 0.93941 1.21372 0.93669 1.00722 0.97510 1.22256 0.96847 0.97960 0.94901 1.22841 0.98892 0.98001 0.96435 1.22835 1.01942 0.96202 0.96140 1.22873 1.02080 0.97226 0.94604 1.22537 1.00853 0.93433 0.83173 1.87960 1.26373 1.76522 1.40065 1.23142 0.97859 0.99896 0.96769 1.21615 0.95635 0.87769 0.91773 1.44728 1.59517 1.28758 1.00889 1.19361 1.26419 1.08058 0.81744 0.89679 1.25645 1.00913 0.97743 1.02049 1.70051 1.40366 1.18937 1.30794 0.85124 0.77463 0.77167 0.79406 1.22356 1.19970 1.20704 0.93316 0.91300 0.94908 0.74908 0.86141 0.84208 0.90204 0.88658 0.91830 0.89621 0.90746 0.91247 0.89356 0.91024 0.90862 0.90044 0.94621 0.89318 0.91974 0.90867 0.90425 1.00113 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 9.14 71.98 0.66 -4.79 16 2 C 0.15 5.99 3.48 45.34 0.16 6.15 16 3 H 0.05 1.97 7.72 -2.39 -0.02 1.95 16 4 C 0.15 5.61 2.85 46.18 0.13 5.74 16 5 H 0.07 2.98 7.25 -2.39 -0.02 2.96 16 6 N -0.71 -19.46 5.18 -436.93 -2.26 -21.72 16 7 C 0.51 14.38 7.71 87.66 0.68 15.05 16 8 O -0.58 -22.12 15.06 10.77 0.16 -21.96 16 9 C -0.13 -2.22 5.41 29.85 0.16 -2.06 16 10 C 0.10 2.06 2.13 30.62 0.07 2.12 16 11 H 0.04 1.01 7.95 -2.39 -0.02 1.00 16 12 C -0.14 -1.78 5.35 30.74 0.16 -1.62 16 13 C -0.10 -1.19 5.11 30.66 0.16 -1.04 16 14 C -0.12 -1.75 0.86 -52.09 -0.04 -1.79 16 15 C -0.12 -1.64 7.13 31.00 0.22 -1.42 16 16 C -0.13 -1.37 7.73 31.17 0.24 -1.13 16 17 C -0.13 -1.56 7.23 31.00 0.22 -1.34 16 18 C 0.08 1.60 6.02 71.90 0.43 2.03 16 19 O -0.39 -9.93 9.65 -135.17 -1.30 -11.23 16 20 C -0.14 -5.54 6.76 31.91 0.22 -5.32 16 21 C 0.16 8.06 5.87 86.78 0.51 8.57 16 22 N -0.61 -31.14 3.13 -668.70 -2.09 -33.23 16 23 C -0.23 -12.45 9.87 84.03 0.83 -11.62 16 24 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 25 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 26 N -0.95 -57.17 10.09 21.65 0.22 -56.95 16 27 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 30 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 31 H 0.05 1.84 8.03 -2.39 -0.02 1.82 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.41 8.59 8.37 -92.71 -0.78 7.81 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 0.94 7.66 -2.39 -0.02 0.92 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.81 7.34 -2.39 -0.02 0.79 16 41 H 0.07 1.08 8.03 -2.38 -0.02 1.06 16 42 H 0.07 0.89 7.62 -2.39 -0.02 0.87 16 43 H 0.09 0.75 7.64 -2.39 -0.02 0.73 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 46 H 0.08 0.98 8.10 -2.39 -0.02 0.96 16 47 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.09 1.78 8.05 -2.39 -0.02 1.76 16 49 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 51 H 0.08 4.46 5.89 -2.39 -0.01 4.44 16 52 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 53 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -72.70 405.54 2.12 -70.59 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.10 Total: 22.92 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.27 Total: 3.98 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -4.14 Total: -111.89 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.14 Total: -33.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.70 2.12 -70.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088995708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.099 kcal (2) G-P(sol) polarization free energy of solvation -72.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds