Wall clock time and date at job start Tue Mar 31 2020 21:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87576 * 2 1 4 4 C 1.54330 * 109.88254 * 238.98065 * 2 1 3 5 5 H 1.08998 * 110.71916 * 336.77792 * 4 2 1 6 6 N 1.46495 * 110.71837 * 99.87013 * 4 2 1 7 7 C 1.34776 * 120.00045 * 202.55812 * 6 4 2 8 8 O 1.21274 * 120.00253 * 0.02562 * 7 6 4 9 9 C 1.50708 * 120.00042 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.46969 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.43968 * 54.91883 * 10 9 7 12 12 C 1.53082 * 109.43774 * 174.79434 * 10 9 7 13 13 C 1.53336 * 109.08928 * 179.47529 * 12 10 9 14 14 C 1.52842 * 108.75021 * 305.13740 * 13 12 10 15 15 C 1.53348 * 113.55543 * 282.23996 * 14 13 12 16 16 C 1.53856 * 86.94947 * 220.08933 * 15 14 13 17 17 C 1.53335 * 113.58671 * 184.24822 * 14 13 12 18 18 C 1.52752 * 112.67618 * 53.21349 * 14 13 12 19 19 O 1.42879 * 109.43895 * 294.99913 * 10 9 7 20 20 C 1.55152 * 103.10392 * 218.32350 * 4 2 1 21 21 C 1.55125 * 101.48605 * 35.27920 * 20 4 2 22 22 N 1.47022 * 110.01369 * 121.09935 * 2 1 3 23 23 C 1.36945 * 125.64595 * 298.46459 * 22 2 1 24 24 H 1.08007 * 119.99733 * 0.02562 * 23 22 2 25 25 C 1.38807 * 120.00012 * 179.97438 * 23 22 2 26 26 N 1.31615 * 119.99978 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99808 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47184 * 90.00033 * 27 25 23 29 29 H 1.48501 * 109.46995 * 209.99923 * 27 25 23 30 30 H 1.48494 * 109.47027 * 329.99697 * 27 25 23 31 31 H 1.08996 * 109.46768 * 181.01828 * 1 2 3 32 32 H 1.08992 * 109.47028 * 301.01759 * 1 2 3 33 33 H 1.08996 * 109.47081 * 61.02013 * 1 2 3 34 34 H 0.97003 * 120.00419 * 22.56217 * 6 4 2 35 35 H 1.08996 * 109.46944 * 60.00127 * 9 7 6 36 36 H 1.08994 * 109.46893 * 300.00198 * 9 7 6 37 37 H 1.08998 * 109.53520 * 299.36801 * 12 10 9 38 38 H 1.09003 * 109.53246 * 59.59463 * 12 10 9 39 39 H 1.08996 * 109.59557 * 185.35525 * 13 12 10 40 40 H 1.09009 * 109.58719 * 64.91402 * 13 12 10 41 41 H 1.08998 * 113.63593 * 105.57504 * 15 14 13 42 42 H 1.08993 * 113.63947 * 334.60470 * 15 14 13 43 43 H 1.08999 * 113.60182 * 139.67653 * 16 15 14 44 44 H 1.08997 * 113.60809 * 270.53902 * 16 15 14 45 45 H 1.09004 * 113.63717 * 25.36332 * 17 14 13 46 46 H 1.08996 * 113.63915 * 254.39192 * 17 14 13 47 47 H 1.08998 * 109.52951 * 66.26858 * 18 14 13 48 48 H 1.09001 * 109.52914 * 186.47112 * 18 14 13 49 49 H 1.08992 * 111.00688 * 153.48550 * 20 4 2 50 50 H 1.09003 * 111.00854 * 277.34293 * 20 4 2 51 51 H 1.08998 * 110.42320 * 204.28849 * 21 20 4 52 52 H 1.09009 * 110.20280 * 82.04666 * 21 20 4 53 53 H 0.96998 * 119.99896 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2438 5 1 1.3050 -1.4435 -1.6205 6 7 2.4520 0.1990 -2.2886 7 6 2.5013 -0.1990 -3.5754 8 8 2.2164 -1.3408 -3.8683 9 6 2.9104 0.7750 -4.6502 10 6 2.8830 0.0747 -6.0102 11 1 1.8989 -0.3652 -6.1720 12 6 3.1717 1.0949 -7.1145 13 6 3.1553 0.3824 -8.4722 14 6 4.1395 -0.7860 -8.4258 15 6 5.6051 -0.3589 -8.5713 16 6 5.7936 -1.6020 -9.4582 17 6 4.2884 -1.5164 -9.7658 18 6 3.8890 -1.7204 -7.2436 19 8 3.8738 -0.9544 -6.0352 20 6 3.2893 -1.5136 -0.6988 21 6 2.8196 -1.8769 0.7343 22 7 2.0332 -0.7135 1.1829 23 6 1.8079 -0.3569 2.4858 24 1 1.2145 0.5168 2.7116 25 6 2.3414 -1.1189 3.5161 26 7 3.0641 -2.1839 3.2408 27 14 2.0335 -0.6328 5.2933 28 1 0.7955 -1.2928 5.7796 29 1 3.1837 -1.0603 6.1297 30 1 1.8769 0.8411 5.3833 31 1 -0.3633 -1.0275 0.0183 32 1 -0.3633 0.5295 0.8807 33 1 -0.3633 0.4979 -0.8990 34 1 2.6796 1.1124 -2.0545 35 1 3.9183 1.1371 -4.4478 36 1 2.2174 1.6162 -4.6611 37 1 2.4078 1.8722 -7.1014 38 1 4.1518 1.5427 -6.9497 39 1 3.4531 1.0802 -9.2547 40 1 2.1523 0.0075 -8.6761 41 1 6.1667 -0.3988 -7.6380 42 1 5.7351 0.5824 -9.1051 43 1 6.4273 -1.4259 -10.3274 44 1 6.0753 -2.4962 -8.9022 45 1 4.0537 -0.8954 -10.6304 46 1 3.7920 -2.4864 -9.7924 47 1 2.9284 -2.2194 -7.3708 48 1 4.6835 -2.4650 -7.1930 49 1 3.4846 -2.4096 -1.2879 50 1 4.1675 -0.8685 -0.6690 51 1 3.6779 -2.0298 1.3885 52 1 2.1956 -2.7704 0.7107 53 1 3.4366 -2.7166 3.9608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088995709.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:29 Heat of formation + Delta-G solvation = -67.642500 kcal Electronic energy + Delta-G solvation = -30073.627423 eV Core-core repulsion = 26138.188017 eV Total energy + Delta-G solvation = -3935.439406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.55155 -40.80425 -39.22891 -37.99684 -35.52377 -34.29621 -33.77323 -32.18096 -31.94376 -30.42317 -28.39864 -26.61930 -26.45520 -25.87742 -25.45672 -23.69699 -22.16423 -21.70458 -21.50532 -21.01207 -19.42692 -18.70446 -17.93190 -17.39189 -17.36872 -16.87593 -16.58029 -16.29281 -15.85712 -15.75534 -15.57101 -15.17661 -14.98439 -14.66255 -14.51913 -14.31150 -14.01021 -13.77859 -13.57682 -13.46861 -13.23561 -13.22759 -12.94548 -12.88175 -12.72842 -12.72406 -12.58792 -12.24657 -12.20535 -12.07488 -11.97902 -11.96196 -11.71293 -11.57213 -11.43772 -11.36883 -10.96188 -10.78628 -10.75510 -10.70259 -10.22975 -9.93289 -8.89973 -7.74340 -5.19779 1.48193 1.50094 1.58571 1.78460 2.21736 2.53288 2.85239 3.35969 3.56471 3.61249 3.65219 3.73318 3.81526 3.87902 3.90729 3.97720 3.99222 4.16644 4.18894 4.23235 4.35183 4.50053 4.51924 4.53197 4.62765 4.64285 4.68278 4.72019 4.73545 4.80895 4.84269 4.88912 4.92799 4.96012 4.97771 5.06286 5.08472 5.11155 5.14505 5.15985 5.23256 5.36441 5.38777 5.49621 5.49989 5.57348 5.59247 5.68507 5.79822 6.30349 6.38385 6.69338 7.11076 7.40581 7.79138 8.43236 9.27713 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.002077 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.359291 B =13476.506272 C =13942.097006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.054 0.946 4 C 0.154 3.846 5 H 0.073 0.927 6 N -0.709 5.709 7 C 0.509 3.491 8 O -0.579 6.579 9 C -0.126 4.126 10 C 0.102 3.898 11 H 0.045 0.955 12 C -0.141 4.141 13 C -0.104 4.104 14 C -0.120 4.120 15 C -0.123 4.123 16 C -0.144 4.144 17 C -0.125 4.125 18 C 0.086 3.914 19 O -0.390 6.390 20 C -0.138 4.138 21 C 0.158 3.842 22 N -0.614 5.614 23 C -0.225 4.225 24 H 0.087 0.913 25 C -0.072 4.072 26 N -0.953 5.953 27 Si 0.980 3.020 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.265 1.265 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.414 0.586 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.077 0.923 52 H -0.018 1.018 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.031 10.233 -28.006 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.072 0.928 4 C 0.048 3.952 5 H 0.092 0.908 6 N -0.361 5.361 7 C 0.297 3.703 8 O -0.458 6.458 9 C -0.166 4.166 10 C 0.044 3.956 11 H 0.063 0.937 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.120 4.120 15 C -0.160 4.160 16 C -0.181 4.181 17 C -0.162 4.162 18 C 0.009 3.991 19 O -0.309 6.309 20 C -0.178 4.178 21 C 0.033 3.967 22 N -0.339 5.339 23 C -0.354 4.354 24 H 0.105 0.895 25 C -0.264 4.264 26 N -0.603 5.603 27 Si 0.809 3.191 28 H -0.218 1.218 29 H -0.223 1.223 30 H -0.190 1.190 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.251 0.749 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.000 1.000 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.996 9.354 -27.854 29.450 hybrid contribution -0.226 -0.312 1.354 1.408 sum 1.770 9.042 -26.500 28.056 Atomic orbital electron populations 1.22119 0.96539 1.00576 1.01304 1.21209 0.93501 0.95133 0.85730 0.92794 1.21625 0.95793 0.90953 0.86824 0.90839 1.45906 1.69251 1.15020 1.05954 1.21276 0.76119 0.89113 0.83742 1.90690 1.50152 1.22102 1.82809 1.21838 1.06123 0.97963 0.90653 1.21857 0.91292 0.88284 0.94177 0.93703 1.22178 1.03830 0.97958 0.93857 1.21540 0.98726 0.96346 0.97478 1.22209 0.96948 0.97147 0.95734 1.22843 0.94781 0.98657 0.99766 1.22880 0.96815 0.98311 1.00113 1.22873 0.96523 1.00568 0.96284 1.22285 1.00782 0.92718 0.83330 1.87984 1.56798 1.48140 1.37986 1.23201 0.97909 0.99798 0.96868 1.21686 0.95658 0.87788 0.91598 1.44735 1.59490 1.28719 1.00974 1.19413 1.26114 1.08211 0.81671 0.89506 1.25656 1.00881 0.97802 1.02105 1.70057 1.40278 1.19182 1.30742 0.85046 0.76449 0.78091 0.79562 1.21774 1.22323 1.18980 0.94879 0.93277 0.90894 0.74918 0.86510 0.83885 0.88661 0.90462 0.89662 0.91957 0.92586 0.88974 0.90466 0.90795 0.88589 0.91656 0.94110 0.89452 0.92282 0.91321 0.90514 1.00044 0.94489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.14 71.98 0.66 -4.59 16 2 C 0.15 5.93 3.48 45.34 0.16 6.09 16 3 H 0.05 1.95 7.70 -2.39 -0.02 1.94 16 4 C 0.15 5.65 2.79 46.18 0.13 5.77 16 5 H 0.07 2.98 7.33 -2.39 -0.02 2.97 16 6 N -0.71 -19.46 5.19 -436.93 -2.27 -21.73 16 7 C 0.51 14.36 7.71 87.66 0.68 15.04 16 8 O -0.58 -22.05 15.10 10.81 0.16 -21.89 16 9 C -0.13 -2.23 5.41 29.85 0.16 -2.06 16 10 C 0.10 2.04 2.13 30.62 0.07 2.11 16 11 H 0.04 1.05 7.95 -2.39 -0.02 1.03 16 12 C -0.14 -1.79 5.36 30.73 0.16 -1.62 16 13 C -0.10 -1.29 5.21 30.65 0.16 -1.13 16 14 C -0.12 -1.79 0.85 -52.09 -0.04 -1.83 16 15 C -0.12 -1.70 7.12 31.00 0.22 -1.48 16 16 C -0.14 -1.79 7.73 31.17 0.24 -1.55 16 17 C -0.13 -1.51 7.23 31.00 0.22 -1.28 16 18 C 0.09 1.82 5.93 71.90 0.43 2.25 16 19 O -0.39 -10.15 9.65 -135.16 -1.30 -11.46 16 20 C -0.14 -5.76 6.79 32.06 0.22 -5.54 16 21 C 0.16 8.20 5.89 86.93 0.51 8.71 16 22 N -0.61 -31.18 3.13 -667.82 -2.09 -33.27 16 23 C -0.23 -12.33 9.89 84.03 0.83 -11.50 16 24 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 25 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 26 N -0.95 -57.60 10.09 21.65 0.22 -57.38 16 27 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 29 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 30 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.41 8.58 8.34 -92.71 -0.77 7.81 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.14 1.41 8.14 -2.39 -0.02 1.40 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 39 H 0.08 0.78 8.03 -2.39 -0.02 0.77 16 40 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 0.96 8.09 -2.39 -0.02 0.94 16 42 H 0.09 1.02 8.02 -2.39 -0.02 1.00 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 1.01 7.64 -2.39 -0.02 0.99 16 45 H 0.10 0.90 8.10 -2.38 -0.02 0.88 16 46 H 0.06 0.82 8.09 -2.39 -0.02 0.80 16 47 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.84 7.34 -2.39 -0.02 1.83 16 49 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 51 H 0.08 4.48 5.87 -2.39 -0.01 4.46 16 52 H -0.02 -1.05 8.14 -2.38 -0.02 -1.06 16 53 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -73.15 406.55 2.11 -71.04 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.10 Total: 23.30 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.27 Total: 3.73 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.14 Total: -112.38 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.14 Total: -33.34 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.15 2.11 -71.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088995709.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.397 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds