Wall clock time and date at job start Tue Mar 31 2020 20:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.43560 * 2 1 4 4 C 1.54889 * 110.48389 * 122.54499 * 2 1 3 5 5 C 1.54890 * 102.74836 * 156.75110 * 4 2 1 6 6 C 1.54270 * 104.19455 * 322.05658 * 5 4 2 7 7 H 1.09005 * 110.02909 * 264.27531 * 6 5 4 8 8 C 1.50701 * 110.03150 * 142.89473 * 6 5 4 9 9 O 1.21285 * 119.99729 * 241.45337 * 8 6 5 10 10 N 1.34774 * 119.99957 * 61.45119 * 8 6 5 11 11 C 1.46932 * 120.62946 * 179.97438 * 10 8 6 12 12 C 1.53182 * 108.77697 * 233.63155 * 11 10 8 13 13 C 1.53038 * 109.31674 * 305.36638 * 12 11 10 14 14 O 1.42899 * 109.46166 * 181.38544 * 13 12 11 15 15 C 1.42902 * 113.99955 * 149.97380 * 14 13 12 16 16 C 1.53496 * 114.20709 * 210.00173 * 15 14 13 17 17 N 1.47070 * 87.98352 * 220.34246 * 16 15 14 18 18 C 1.36935 * 136.05550 * 207.07944 * 17 16 15 19 19 H 1.08005 * 120.00172 * 6.50069 * 18 17 16 20 20 C 1.38815 * 119.99990 * 186.49806 * 18 17 16 21 21 N 1.31619 * 119.99663 * 6.42579 * 20 18 17 22 22 Si 1.86800 * 119.99976 * 186.42252 * 20 18 17 23 23 H 1.48495 * 109.47340 * 265.02201 * 22 20 18 24 24 H 1.48498 * 109.46951 * 25.02385 * 22 20 18 25 25 H 1.48498 * 109.46744 * 145.01993 * 22 20 18 26 26 C 1.47064 * 87.88277 * 27.34197 * 17 16 15 27 27 C 1.53041 * 109.52470 * 61.37009 * 13 12 11 28 28 C 1.46925 * 120.63551 * 0.02562 * 10 8 6 29 29 C 1.53874 * 106.59773 * 23.60841 * 6 5 4 30 30 H 1.08999 * 109.47404 * 298.91272 * 1 2 3 31 31 H 1.09003 * 109.47216 * 58.91399 * 1 2 3 32 32 H 1.09000 * 109.47395 * 178.91330 * 1 2 3 33 33 H 1.08995 * 110.76142 * 38.43848 * 4 2 1 34 34 H 1.08999 * 110.75625 * 275.06031 * 4 2 1 35 35 H 1.08998 * 110.48663 * 203.37345 * 5 4 2 36 36 H 1.09008 * 110.59803 * 80.78792 * 5 4 2 37 37 H 1.08998 * 109.58246 * 113.84257 * 11 10 8 38 38 H 1.08999 * 109.70241 * 353.49108 * 11 10 8 39 39 H 1.09004 * 109.49650 * 185.41446 * 12 11 10 40 40 H 1.09007 * 109.49893 * 65.31883 * 12 11 10 41 41 H 1.09008 * 109.45847 * 301.36057 * 13 12 11 42 42 H 1.09005 * 113.27893 * 343.06378 * 15 14 13 43 43 H 1.09004 * 113.46865 * 105.56684 * 16 15 14 44 44 H 1.08993 * 113.51976 * 335.13093 * 16 15 14 45 45 H 0.97005 * 119.99413 * 179.97438 * 21 20 18 46 46 H 1.09000 * 113.46743 * 87.44096 * 26 17 16 47 47 H 1.08999 * 113.46191 * 217.87327 * 26 17 16 48 48 H 1.08999 * 109.49475 * 58.58340 * 27 13 12 49 49 H 1.09004 * 109.49771 * 178.67549 * 27 13 12 50 50 H 1.08996 * 109.58859 * 246.15685 * 28 10 8 51 51 H 1.09001 * 109.58291 * 6.44074 * 28 10 8 52 52 H 1.09005 * 110.03073 * 119.28893 * 29 6 5 53 53 H 1.09003 * 110.03071 * 240.71307 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7806 1.2231 5 6 3.4919 -1.1942 0.7628 6 6 3.3201 -1.5376 -0.7314 7 1 3.1757 -2.6112 -0.8535 8 6 4.5317 -1.0886 -1.5069 9 8 4.4166 -0.2604 -2.3854 10 7 5.7431 -1.6073 -1.2242 11 6 6.9335 -1.1799 -1.9720 12 6 7.6357 -2.4207 -2.5321 13 6 7.9278 -3.3962 -1.3896 14 8 8.6118 -4.5406 -1.9039 15 6 9.5008 -5.1551 -0.9689 16 6 10.7119 -5.8450 -1.6120 17 7 10.5431 -6.9339 -0.6380 18 6 11.3577 -7.8612 -0.0448 19 1 12.4256 -7.8205 -0.2009 20 6 10.8108 -8.8534 0.7574 21 7 9.5039 -8.9813 0.8469 22 14 11.9297 -10.0070 1.7095 23 1 12.1410 -11.2505 0.9258 24 1 13.2369 -9.3440 1.9478 25 1 11.3007 -10.3436 3.0119 26 6 9.1135 -6.5930 -0.5866 27 6 6.6120 -3.8361 -0.7437 28 6 5.8983 -2.6118 -0.1632 29 6 2.0726 -0.7784 -1.2163 30 1 -0.3634 0.4968 0.8995 31 1 -0.3634 0.5306 -0.8801 32 1 -0.3634 -1.0275 -0.0195 33 1 1.4594 -1.6596 1.4228 34 1 2.1230 -0.1363 2.1008 35 1 3.8337 -2.0675 1.3182 36 1 4.1912 -0.3671 0.8861 37 1 7.6111 -0.6460 -1.3058 38 1 6.6371 -0.5262 -2.7922 39 1 8.5715 -2.1259 -3.0070 40 1 6.9908 -2.9033 -3.2666 41 1 8.5523 -2.9048 -0.6434 42 1 9.7490 -4.5126 -0.1241 43 1 11.6430 -5.2920 -1.4878 44 1 10.5397 -6.1542 -2.6429 45 1 9.1218 -9.6749 1.4072 46 1 8.5189 -7.0992 -1.3471 47 1 8.6828 -6.6775 0.4111 48 1 5.9769 -4.3052 -1.4951 49 1 6.8191 -4.5489 0.0546 50 1 6.4914 -2.1949 0.6507 51 1 4.9168 -2.9021 0.2114 52 1 2.3436 -0.0852 -2.0127 53 1 1.3220 -1.4833 -1.5737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093581731.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:18 Heat of formation + Delta-G solvation = -55.558561 kcal Electronic energy + Delta-G solvation = -29866.600020 eV Core-core repulsion = 25931.684613 eV Total energy + Delta-G solvation = -3934.915407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.67751 -40.42074 -39.09546 -38.22883 -36.83453 -34.23833 -33.39378 -32.25853 -31.65671 -29.80271 -29.48516 -26.72032 -26.42701 -25.71952 -24.86706 -24.10572 -22.72645 -21.57518 -21.24379 -20.77532 -19.70120 -18.79941 -18.57529 -17.82266 -17.09766 -16.95326 -16.63323 -16.05351 -15.86664 -15.82058 -15.44544 -15.28917 -14.90449 -14.88580 -14.52520 -14.48055 -14.18601 -13.84359 -13.59215 -13.50690 -13.22898 -13.19635 -12.89934 -12.82365 -12.80265 -12.72966 -12.63021 -12.28169 -12.22980 -12.13583 -11.98980 -11.84009 -11.68684 -11.64248 -11.49605 -11.45833 -11.35556 -11.22191 -10.88124 -10.73327 -10.16411 -9.73848 -9.00038 -7.96266 -5.30260 1.46234 1.48230 1.57918 1.58183 1.96195 2.40336 2.71213 3.27277 3.39450 3.51723 3.57542 3.69054 3.70864 3.78038 3.94313 4.01620 4.06175 4.10495 4.18397 4.30952 4.34584 4.37330 4.40929 4.54408 4.56020 4.59807 4.64113 4.72155 4.74715 4.77903 4.79227 4.84941 4.85539 4.91029 4.96698 4.98721 5.05154 5.11280 5.15399 5.16526 5.18017 5.21318 5.27428 5.34531 5.35867 5.40491 5.44918 5.56096 5.57434 5.84874 6.36184 6.46499 6.85969 7.12900 7.54232 8.55178 9.22902 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.002157 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.470717 B =12980.397247 C =14124.756623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.113 4.113 7 H 0.111 0.889 8 C 0.517 3.483 9 O -0.584 6.584 10 N -0.609 5.609 11 C 0.117 3.883 12 C -0.122 4.122 13 C 0.085 3.915 14 O -0.380 6.380 15 C 0.069 3.931 16 C 0.113 3.887 17 N -0.636 5.636 18 C -0.233 4.233 19 H 0.090 0.910 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.986 3.014 23 H -0.288 1.288 24 H -0.263 1.263 25 H -0.291 1.291 26 C 0.149 3.851 27 C -0.156 4.156 28 C 0.110 3.890 29 C -0.114 4.114 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.251 0.749 46 H 0.009 0.991 47 H 0.036 0.964 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.112 0.888 52 H 0.061 0.939 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 20.104 1.343 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.134 4.134 7 H 0.129 0.871 8 C 0.307 3.693 9 O -0.464 6.464 10 N -0.342 5.342 11 C -0.006 4.006 12 C -0.160 4.160 13 C 0.027 3.973 14 O -0.298 6.298 15 C 0.011 3.989 16 C -0.013 4.013 17 N -0.364 5.364 18 C -0.361 4.361 19 H 0.108 0.892 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.813 3.187 23 H -0.215 1.215 24 H -0.188 1.188 25 H -0.217 1.217 26 C 0.022 3.978 27 C -0.194 4.194 28 C -0.012 4.012 29 C -0.152 4.152 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.027 0.973 47 H 0.054 0.946 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.130 0.870 52 H 0.080 0.920 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.759 20.209 0.881 25.040 hybrid contribution 0.512 -1.183 0.101 1.293 sum -14.247 19.026 0.982 23.790 Atomic orbital electron populations 1.21778 0.94022 1.02231 1.01867 1.21960 0.96260 0.98808 0.94524 0.91869 1.22585 0.94996 1.00401 0.97268 1.22513 0.98547 1.02375 0.91689 1.22012 0.92170 1.02515 0.96673 0.87091 1.21134 0.85092 0.80301 0.82749 1.90630 1.85799 1.35460 1.34543 1.48232 1.07259 1.41852 1.36813 1.21576 0.86138 0.95809 0.97059 1.21912 1.01668 0.94886 0.97538 1.22315 0.92849 0.86069 0.96058 1.87926 1.58161 1.44421 1.39322 1.24222 0.90245 0.92528 0.91955 1.22721 0.96884 0.88497 0.93157 1.45729 1.06129 1.37280 1.47256 1.19363 0.89695 1.04833 1.22207 0.89245 1.25776 0.97529 1.00291 1.02464 1.70053 1.10897 1.35935 1.43253 0.84966 0.78070 0.78308 0.77390 1.21498 1.18768 1.21695 1.22402 0.86605 0.91200 0.97554 1.22428 0.97219 0.98476 1.01315 1.22049 1.03239 0.86783 0.89146 1.22222 0.95157 0.99180 0.98675 0.91873 0.93066 0.92037 0.90044 0.90440 0.88624 0.91743 0.89322 0.89754 0.89073 0.92427 0.90436 0.87492 0.91808 0.94573 0.94047 0.97331 0.94590 0.92047 0.90405 0.88995 0.86998 0.92020 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.13 71.98 0.66 -0.90 16 2 C -0.10 -1.30 3.45 -9.72 -0.03 -1.33 16 3 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.12 -1.20 6.33 31.89 0.20 -1.00 16 5 C -0.11 -1.32 5.09 31.67 0.16 -1.16 16 6 C -0.11 -1.79 2.42 -10.81 -0.03 -1.82 16 7 H 0.11 1.52 7.70 -2.38 -0.02 1.50 16 8 C 0.52 11.47 6.95 87.66 0.61 12.08 16 9 O -0.58 -17.45 14.63 -3.05 -0.04 -17.50 16 10 N -0.61 -11.67 2.97 -819.00 -2.43 -14.11 16 11 C 0.12 2.22 6.43 86.36 0.56 2.78 16 12 C -0.12 -2.57 5.73 30.67 0.18 -2.39 16 13 C 0.08 2.01 2.56 30.62 0.08 2.09 16 14 O -0.38 -12.42 10.04 -148.98 -1.50 -13.91 16 15 C 0.07 2.55 4.64 31.01 0.14 2.69 16 16 C 0.11 4.69 8.52 83.17 0.71 5.40 16 17 N -0.64 -33.34 3.76 -738.59 -2.78 -36.12 16 18 C -0.23 -13.16 10.73 84.03 0.90 -12.26 16 19 H 0.09 4.77 7.84 -2.91 -0.02 4.74 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.95 -57.73 11.81 21.65 0.26 -57.47 16 22 Si 0.99 45.15 29.56 68.60 2.03 47.17 16 23 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 C 0.15 7.19 7.08 83.26 0.59 7.78 16 27 C -0.16 -3.37 5.69 30.66 0.17 -3.20 16 28 C 0.11 1.69 5.61 86.35 0.48 2.17 16 29 C -0.11 -1.93 5.97 31.32 0.19 -1.74 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.61 8.11 -2.39 -0.02 0.59 16 33 H 0.08 0.72 8.06 -2.39 -0.02 0.70 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.78 6.62 -2.39 -0.02 0.77 16 36 H 0.06 0.85 7.85 -2.38 -0.02 0.83 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.85 7.01 -2.39 -0.02 1.83 16 39 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.08 1.61 7.43 -2.38 -0.02 1.59 16 42 H 0.11 3.50 7.47 -2.38 -0.02 3.48 16 43 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 47 H 0.04 1.87 7.57 -2.39 -0.02 1.85 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.11 1.32 4.28 -2.39 -0.01 1.31 16 52 H 0.06 1.40 6.39 -2.38 -0.02 1.38 16 53 H 0.07 1.13 7.82 -2.39 -0.02 1.11 16 Total: -1.00 -72.50 404.22 2.43 -70.07 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.87 Total: 16.04 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.03 Total: 5.82 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -4.96 Total: -107.71 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.54 Total: -31.41 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.50 2.43 -70.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093581731.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.515 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds