Wall clock time and date at job start Tue Mar 31 2020 20:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.67583 * 2 1 4 4 C 1.54961 * 110.76665 * 123.40119 * 2 1 3 5 5 C 1.54270 * 104.16191 * 156.22182 * 4 2 1 6 6 C 1.53869 * 106.63967 * 336.44607 * 5 4 2 7 7 H 1.09003 * 110.03849 * 119.30531 * 6 5 4 8 8 C 1.50698 * 110.03390 * 240.69268 * 6 5 4 9 9 O 1.21279 * 120.00486 * 118.54455 * 8 6 5 10 10 N 1.34783 * 119.99618 * 298.54436 * 8 6 5 11 11 C 1.46921 * 120.63053 * 359.72157 * 10 8 6 12 12 C 1.53618 * 108.54336 * 126.37014 * 11 10 8 13 13 C 1.53041 * 109.24427 * 54.85287 * 12 11 10 14 14 O 1.42902 * 109.45918 * 178.49119 * 13 12 11 15 15 C 1.42900 * 114.00241 * 270.06823 * 14 13 12 16 16 C 1.53947 * 113.74315 * 246.67826 * 15 14 13 17 17 N 1.47583 * 86.11749 * 222.04651 * 16 15 14 18 18 C 1.36931 * 134.49406 * 204.64064 * 17 16 15 19 19 H 1.08000 * 120.00336 * 179.97438 * 18 17 16 20 20 C 1.38813 * 119.99931 * 0.02562 * 18 17 16 21 21 N 1.31625 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47253 * 89.99126 * 22 20 18 24 24 H 1.48493 * 109.47155 * 209.99897 * 22 20 18 25 25 H 1.48502 * 109.46658 * 329.99899 * 22 20 18 26 26 C 1.47582 * 91.01163 * 24.63910 * 17 16 15 27 27 C 1.53043 * 109.53722 * 298.51286 * 13 12 11 28 28 C 1.46929 * 120.62603 * 179.97438 * 10 8 6 29 29 C 1.54268 * 106.60115 * 359.97438 * 6 5 4 30 30 H 1.09005 * 109.47018 * 183.23026 * 1 2 3 31 31 H 1.08996 * 109.47051 * 303.23017 * 1 2 3 32 32 H 1.08997 * 109.47118 * 63.22978 * 1 2 3 33 33 H 1.08997 * 110.47708 * 37.56779 * 4 2 1 34 34 H 1.09002 * 110.53308 * 274.90171 * 4 2 1 35 35 H 1.09002 * 110.03399 * 217.13605 * 5 4 2 36 36 H 1.08995 * 110.02943 * 95.75505 * 5 4 2 37 37 H 1.09003 * 109.58517 * 246.20279 * 11 10 8 38 38 H 1.09000 * 109.58720 * 6.62434 * 11 10 8 39 39 H 1.09000 * 109.63416 * 294.86323 * 12 11 10 40 40 H 1.08999 * 109.46010 * 174.73915 * 12 11 10 41 41 H 1.09000 * 109.45980 * 58.53509 * 13 12 11 42 42 H 1.09003 * 112.94027 * 18.40940 * 15 14 13 43 43 H 1.09005 * 113.76806 * 336.34614 * 16 15 14 44 44 H 1.09000 * 113.76954 * 107.74428 * 16 15 14 45 45 H 0.96995 * 119.99516 * 180.02562 * 21 20 18 46 46 H 1.09009 * 113.76951 * 221.05695 * 26 17 16 47 47 H 1.08998 * 113.87423 * 89.67805 * 26 17 16 48 48 H 1.08999 * 109.49429 * 301.41124 * 27 13 12 49 49 H 1.09005 * 109.49358 * 181.31678 * 27 13 12 50 50 H 1.08990 * 109.58965 * 353.37850 * 28 10 8 51 51 H 1.08999 * 109.58472 * 113.80122 * 28 10 8 52 52 H 1.08997 * 110.48788 * 142.28685 * 29 6 5 53 53 H 1.09000 * 110.48806 * 264.79985 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0794 -0.7976 1.2096 5 6 3.4932 -1.2282 0.7671 6 6 3.4932 -1.2254 -0.7716 7 1 4.2332 -0.5169 -1.1438 8 6 3.7957 -2.6076 -1.2904 9 8 2.9794 -3.1921 -1.9707 10 7 4.9735 -3.1941 -0.9983 11 6 5.9748 -2.4962 -0.1805 12 6 6.3659 -3.4055 0.9943 13 6 6.8307 -4.7589 0.4516 14 8 7.2290 -5.5964 1.5388 15 6 8.6099 -5.4792 1.8873 16 6 9.4298 -6.7519 1.6078 17 7 10.0736 -6.5026 2.9122 18 6 11.2782 -6.8414 3.4682 19 1 11.5171 -6.5259 4.4731 20 6 12.1928 -7.5897 2.7399 21 7 11.9020 -7.9739 1.5150 22 14 13.8359 -8.0527 3.4985 23 1 13.7071 -9.3540 4.2023 24 1 14.8600 -8.1672 2.4294 25 1 14.2465 -7.0047 4.4672 26 6 8.8977 -5.7413 3.3767 27 6 5.6839 -5.4253 -0.3119 28 6 5.2826 -4.5414 -1.4964 29 6 2.0790 -0.7937 -1.2116 30 1 -0.3633 -1.0261 0.0579 31 1 -0.3633 0.5631 0.8596 32 1 -0.3633 0.4629 -0.9175 33 1 1.4579 -1.6716 1.4041 34 1 2.1334 -0.1624 2.0938 35 1 3.7121 -2.2293 1.1386 36 1 4.2332 -0.5212 1.1417 37 1 6.8544 -2.2789 -0.7865 38 1 5.5520 -1.5665 0.2002 39 1 5.5051 -3.5515 1.6468 40 1 7.1755 -2.9423 1.5582 41 1 7.6760 -4.6098 -0.2202 42 1 9.0684 -4.5670 1.5055 43 1 8.8316 -7.6627 1.5801 44 1 10.1073 -6.6604 0.7589 45 1 12.5409 -8.4971 1.0063 46 1 9.1503 -4.8430 3.9400 47 1 8.1422 -6.3536 3.8690 48 1 4.8295 -5.5522 0.3530 49 1 6.0083 -6.3994 -0.6781 50 1 4.4031 -4.9614 -1.9842 51 1 6.1068 -4.4878 -2.2077 52 1 2.1320 -0.1554 -2.0934 53 1 1.4582 -1.6672 -1.4109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093581733.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:26 Heat of formation + Delta-G solvation = -59.133600 kcal Electronic energy + Delta-G solvation = -29954.908702 eV Core-core repulsion = 26019.838270 eV Total energy + Delta-G solvation = -3935.070432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.69114 -40.30776 -38.99570 -38.21855 -36.79280 -34.19166 -33.38834 -32.26243 -31.61133 -29.79980 -29.42492 -26.78089 -26.57609 -25.71174 -24.81767 -24.14783 -22.55276 -21.62104 -21.12980 -20.87762 -19.68197 -18.81553 -18.26810 -17.77177 -17.22328 -16.98458 -16.85018 -16.02898 -15.89034 -15.70000 -15.40219 -15.31385 -15.00109 -14.63887 -14.55827 -14.44516 -14.07057 -13.91801 -13.64002 -13.40488 -13.25278 -13.20609 -13.03010 -12.85205 -12.83585 -12.72491 -12.38696 -12.28973 -12.23916 -12.14867 -11.97673 -11.83337 -11.69600 -11.65478 -11.46291 -11.42193 -11.37540 -11.33101 -10.88139 -10.71420 -10.20672 -9.73620 -8.98104 -7.93131 -5.28519 1.45575 1.48198 1.56934 1.59064 1.96576 2.41848 2.72930 3.26740 3.39563 3.45702 3.56479 3.65453 3.74397 3.84324 3.91553 4.02556 4.10273 4.13965 4.19489 4.30800 4.33589 4.38259 4.46346 4.51557 4.55868 4.61278 4.66800 4.70179 4.74671 4.77998 4.79161 4.85047 4.86546 4.89463 4.93936 4.97948 5.05923 5.13021 5.14189 5.16676 5.21145 5.24235 5.29983 5.34847 5.35438 5.39527 5.48439 5.53214 5.60981 5.88085 6.38542 6.46835 6.88290 7.14166 7.56876 8.51847 9.23952 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.002026 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.435841 B =13814.670690 C =14360.881963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.094 0.906 4 C -0.121 4.121 5 C -0.116 4.116 6 C -0.109 4.109 7 H 0.123 0.877 8 C 0.515 3.485 9 O -0.587 6.587 10 N -0.611 5.611 11 C 0.104 3.896 12 C -0.149 4.149 13 C 0.083 3.917 14 O -0.384 6.384 15 C 0.073 3.927 16 C 0.143 3.857 17 N -0.638 5.638 18 C -0.236 4.236 19 H 0.089 0.911 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.984 3.016 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.263 1.263 26 C 0.120 3.880 27 C -0.123 4.123 28 C 0.118 3.882 29 C -0.108 4.108 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.009 0.991 44 H 0.045 0.955 45 H 0.249 0.751 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.073 0.927 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.048 20.891 -4.335 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.112 0.888 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.130 4.130 7 H 0.141 0.859 8 C 0.306 3.694 9 O -0.467 6.467 10 N -0.343 5.343 11 C -0.017 4.017 12 C -0.187 4.187 13 C 0.025 3.975 14 O -0.302 6.302 15 C 0.015 3.985 16 C 0.017 3.983 17 N -0.366 5.366 18 C -0.364 4.364 19 H 0.107 0.893 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.811 3.189 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.188 1.188 26 C -0.005 4.005 27 C -0.162 4.162 28 C -0.005 4.005 29 C -0.146 4.146 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.101 0.899 52 H 0.091 0.909 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.300 20.334 -4.577 28.406 hybrid contribution 1.076 -1.266 0.014 1.662 sum -18.223 19.068 -4.562 26.767 Atomic orbital electron populations 1.21756 0.94870 1.01403 1.02186 1.22132 0.95672 0.99510 0.93724 0.88817 1.22463 0.95266 0.99632 0.98447 1.22293 0.99031 1.02477 0.91592 1.22043 1.00581 0.92418 0.97991 0.85888 1.21277 0.80218 0.89065 0.78874 1.90648 1.48010 1.66830 1.41219 1.48257 1.16871 1.17077 1.52095 1.22182 0.92035 0.96084 0.91443 1.22470 1.02746 0.95024 0.98458 1.22257 0.96655 0.90490 0.88106 1.87944 1.25390 1.64766 1.52082 1.24385 0.80546 0.97840 0.95777 1.22636 0.91561 0.94365 0.89762 1.46033 1.12930 1.62746 1.14924 1.19435 0.90431 1.27979 0.98509 0.89331 1.25728 1.02607 1.00761 0.97135 1.70030 1.36658 1.42493 1.11166 0.85001 0.78533 0.78190 0.77135 1.21530 1.21904 1.18783 1.22877 0.87745 0.95081 0.94799 1.21886 0.97882 0.99420 0.96974 1.21503 1.01727 0.81857 0.95431 1.22376 0.93824 0.99848 0.98555 0.93812 0.91651 0.92367 0.92991 0.89770 0.92282 0.87946 0.89507 0.86288 0.91111 0.89105 0.91673 0.88119 0.97294 0.93646 0.94173 0.91185 0.94063 0.91945 0.90419 0.89959 0.89941 0.90870 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.28 71.98 0.67 -0.96 16 2 C -0.09 -1.02 3.49 -9.47 -0.03 -1.05 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -1.38 6.28 31.70 0.20 -1.18 16 5 C -0.12 -1.29 4.67 31.32 0.15 -1.14 16 6 C -0.11 -1.51 2.43 -10.82 -0.03 -1.54 16 7 H 0.12 1.11 7.94 -2.39 -0.02 1.09 16 8 C 0.52 11.08 6.87 87.66 0.60 11.68 16 9 O -0.59 -17.63 14.83 -3.03 -0.04 -17.67 16 10 N -0.61 -11.54 2.93 -818.17 -2.40 -13.94 16 11 C 0.10 1.39 5.61 86.51 0.49 1.88 16 12 C -0.15 -2.64 5.71 30.82 0.18 -2.46 16 13 C 0.08 2.01 2.45 30.62 0.07 2.09 16 14 O -0.38 -12.63 10.01 -148.98 -1.49 -14.12 16 15 C 0.07 2.71 4.32 31.25 0.14 2.85 16 16 C 0.14 7.03 7.35 86.48 0.64 7.66 16 17 N -0.64 -33.39 3.70 -721.40 -2.67 -36.06 16 18 C -0.24 -13.31 10.70 84.03 0.90 -12.41 16 19 H 0.09 4.72 7.83 -2.91 -0.02 4.69 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 21 N -0.95 -58.22 11.38 21.65 0.25 -57.97 16 22 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.12 4.88 8.77 86.48 0.76 5.64 16 27 C -0.12 -2.90 5.73 30.66 0.18 -2.72 16 28 C 0.12 2.47 6.43 86.35 0.55 3.03 16 29 C -0.11 -1.64 5.59 31.67 0.18 -1.47 16 30 H 0.04 0.60 8.10 -2.38 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.76 8.01 -2.39 -0.02 0.74 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.85 6.65 -2.39 -0.02 0.83 16 36 H 0.10 0.62 7.53 -2.39 -0.02 0.60 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.12 1.01 4.30 -2.39 -0.01 0.99 16 39 H 0.07 1.35 7.71 -2.39 -0.02 1.33 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.57 7.72 -2.39 -0.02 1.55 16 42 H 0.10 3.34 7.77 -2.39 -0.02 3.32 16 43 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.05 2.45 7.15 -2.39 -0.02 2.44 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 46 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 50 H 0.08 1.98 7.00 -2.39 -0.02 1.97 16 51 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 53 H 0.06 1.22 6.80 -2.39 -0.02 1.21 16 Total: -1.00 -73.56 403.58 2.64 -70.92 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.87 Total: 14.84 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 6.10 Total: 6.38 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.82 Total: -107.97 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.54 Total: -31.80 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.56 2.64 -70.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093581733.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.791 kcal (2) G-P(sol) polarization free energy of solvation -73.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds