Wall clock time and date at job start Tue Mar 31 2020 20:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.53729 * 2 1 4 4 C 1.54887 * 110.48631 * 237.38551 * 2 1 3 5 5 C 1.54962 * 102.77636 * 203.40353 * 4 2 1 6 6 C 1.54261 * 104.16194 * 37.89212 * 5 4 2 7 7 H 1.08995 * 110.03834 * 95.75322 * 6 5 4 8 8 C 1.50699 * 110.03107 * 217.13585 * 6 5 4 9 9 O 1.21288 * 120.00360 * 95.41550 * 8 6 5 10 10 N 1.34773 * 119.99968 * 275.41481 * 8 6 5 11 11 C 1.46925 * 120.63080 * 354.78950 * 10 8 6 12 12 C 1.53195 * 108.77565 * 233.58769 * 11 10 8 13 13 C 1.53043 * 109.33696 * 305.34927 * 12 11 10 14 14 O 1.42904 * 109.45485 * 181.40186 * 13 12 11 15 15 C 1.42900 * 113.99694 * 149.99797 * 14 13 12 16 16 C 1.53942 * 113.74632 * 248.74083 * 15 14 13 17 17 N 1.47816 * 86.03919 * 222.08490 * 16 15 14 18 18 C 1.36937 * 134.45599 * 204.63584 * 17 16 15 19 19 H 1.07997 * 119.99805 * 179.86468 * 18 17 16 20 20 C 1.38806 * 119.99899 * 359.87688 * 18 17 16 21 21 N 1.31618 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99787 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46927 * 119.99736 * 22 20 18 25 25 H 1.48501 * 109.47309 * 239.99769 * 22 20 18 26 26 C 1.47579 * 91.04977 * 24.54751 * 17 16 15 27 27 C 1.53099 * 109.50457 * 61.35213 * 13 12 11 28 28 C 1.46932 * 120.63321 * 174.76953 * 10 8 6 29 29 C 1.53877 * 106.63682 * 336.44229 * 6 5 4 30 30 H 1.09006 * 109.47161 * 297.38656 * 1 2 3 31 31 H 1.08994 * 109.47238 * 57.38669 * 1 2 3 32 32 H 1.08997 * 109.47113 * 177.39116 * 1 2 3 33 33 H 1.09004 * 110.75692 * 321.69687 * 4 2 1 34 34 H 1.09002 * 110.75387 * 85.05977 * 4 2 1 35 35 H 1.09003 * 110.47717 * 279.23247 * 5 4 2 36 36 H 1.09005 * 110.52573 * 156.56877 * 5 4 2 37 37 H 1.08997 * 109.58484 * 113.80472 * 11 10 8 38 38 H 1.08994 * 109.58447 * 353.37592 * 11 10 8 39 39 H 1.08995 * 109.49963 * 65.31798 * 12 11 10 40 40 H 1.09004 * 109.49504 * 185.38242 * 12 11 10 41 41 H 1.09004 * 109.46279 * 301.35744 * 13 12 11 42 42 H 1.09001 * 112.94778 * 20.33489 * 15 14 13 43 43 H 1.09002 * 113.76574 * 336.34887 * 16 15 14 44 44 H 1.09002 * 113.77116 * 107.74730 * 16 15 14 45 45 H 0.97003 * 119.99697 * 180.02562 * 21 20 18 46 46 H 1.08994 * 113.76834 * 221.15324 * 26 17 16 47 47 H 1.09002 * 113.77051 * 89.75219 * 26 17 16 48 48 H 1.09000 * 109.49021 * 178.70234 * 27 13 12 49 49 H 1.08998 * 109.52120 * 58.62409 * 27 13 12 50 50 H 1.09001 * 109.58715 * 246.20312 * 28 10 8 51 51 H 1.09009 * 109.58462 * 6.48097 * 28 10 8 52 52 H 1.08998 * 110.03210 * 119.26427 * 29 6 5 53 53 H 1.09005 * 110.02955 * 240.69019 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 -1.2221 5 6 3.4912 -1.1990 -0.7601 6 6 3.3166 -1.5405 0.7340 7 1 3.1697 -2.6134 0.8573 8 6 4.5281 -1.0933 1.5108 9 8 4.5278 -0.0158 2.0676 10 7 5.6120 -1.8906 1.5867 11 6 5.5873 -3.2440 1.0152 12 6 6.0097 -4.2436 2.0965 13 6 7.3671 -3.8281 2.6683 14 8 7.7789 -4.7770 3.6543 15 6 9.1962 -4.9214 3.7658 16 6 9.7208 -6.2838 3.2774 17 7 10.5986 -6.2566 4.4664 18 6 11.7965 -6.8371 4.7876 19 1 12.2453 -6.6511 5.7522 20 6 12.4341 -7.6643 3.8734 21 7 11.8871 -7.8912 2.6980 22 14 14.0687 -8.4556 4.3113 23 1 14.4661 -8.0447 5.6818 24 1 13.9332 -9.9335 4.2579 25 1 15.1057 -8.0183 3.3425 26 6 9.6671 -5.3513 5.1670 27 6 7.2493 -2.4430 3.3097 28 6 6.8410 -1.4230 2.2422 29 6 2.0699 -0.7788 1.2172 30 1 -0.3634 0.4727 0.9125 31 1 -0.3633 0.5538 -0.8656 32 1 -0.3633 -1.0266 -0.0468 33 1 1.4580 -1.6601 -1.4222 34 1 2.1251 -0.1382 -2.1001 35 1 4.1907 -0.3722 -0.8833 36 1 3.8319 -2.0739 -1.3141 37 1 6.2806 -3.2989 0.1760 38 1 4.5788 -3.4784 0.6748 39 1 5.2665 -4.2528 2.8938 40 1 6.0879 -5.2396 1.6606 41 1 8.1044 -3.7952 1.8661 42 1 9.7432 -4.0699 3.3611 43 1 8.9732 -7.0767 3.3014 44 1 10.2594 -6.2337 2.3311 45 1 12.3326 -8.4696 2.0592 46 1 10.1628 -4.5581 5.7265 47 1 8.9036 -5.8697 5.7472 48 1 8.2104 -2.1572 3.7371 49 1 6.4947 -2.4686 4.0958 50 1 7.6365 -1.3293 1.5029 51 1 6.6604 -0.4546 2.7091 52 1 1.3176 -1.4822 1.5741 53 1 2.3413 -0.0857 2.0136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093581734.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:31 Heat of formation + Delta-G solvation = -59.999276 kcal Electronic energy + Delta-G solvation = -29647.311073 eV Core-core repulsion = 25712.203102 eV Total energy + Delta-G solvation = -3935.107971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.62554 -40.32731 -39.08353 -38.14992 -36.77599 -34.18311 -33.26462 -32.31611 -31.74261 -29.78842 -29.43573 -26.69506 -26.60820 -25.69918 -24.74979 -24.23139 -22.73591 -21.41266 -21.19485 -20.86652 -19.55894 -18.85585 -18.69819 -17.85328 -17.10727 -16.99115 -16.46876 -16.06814 -15.88048 -15.74883 -15.45427 -15.36673 -14.93921 -14.71931 -14.55765 -14.45065 -14.15948 -13.80241 -13.74937 -13.42484 -13.27155 -13.22463 -12.91352 -12.83248 -12.78527 -12.72939 -12.62873 -12.27629 -12.26254 -12.14795 -11.93525 -11.76209 -11.72596 -11.64368 -11.51193 -11.45502 -11.41529 -11.26862 -10.89753 -10.70869 -10.22392 -9.74243 -8.98342 -7.93827 -5.28848 1.45612 1.46950 1.57219 1.57526 1.95761 2.41062 2.71991 3.26159 3.40194 3.44412 3.62024 3.67755 3.71689 3.75882 3.92833 4.00758 4.08380 4.13056 4.16687 4.28999 4.33503 4.39764 4.41385 4.51758 4.55873 4.60042 4.66730 4.71886 4.73461 4.75695 4.80228 4.81453 4.88291 4.92904 4.96645 4.98217 5.04400 5.10283 5.14851 5.16962 5.19842 5.21915 5.28078 5.36043 5.36556 5.41030 5.47791 5.53667 5.57689 5.87531 6.37830 6.44765 6.88302 7.13934 7.56000 8.51017 9.23553 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.034060 B = 0.001875 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.885049 B =14929.708845 C =15248.919204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.057 0.943 4 C -0.113 4.113 5 C -0.107 4.107 6 C -0.112 4.112 7 H 0.119 0.881 8 C 0.517 3.483 9 O -0.586 6.586 10 N -0.611 5.611 11 C 0.111 3.889 12 C -0.128 4.128 13 C 0.083 3.917 14 O -0.381 6.381 15 C 0.071 3.929 16 C 0.146 3.854 17 N -0.638 5.638 18 C -0.237 4.237 19 H 0.087 0.913 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.292 1.292 25 H -0.289 1.289 26 C 0.119 3.881 27 C -0.146 4.146 28 C 0.115 3.885 29 C -0.113 4.113 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.015 0.985 44 H 0.047 0.953 45 H 0.250 0.750 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.081 0.919 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.141 14.358 -9.933 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.076 0.924 4 C -0.150 4.150 5 C -0.145 4.145 6 C -0.133 4.133 7 H 0.137 0.863 8 C 0.307 3.693 9 O -0.467 6.467 10 N -0.343 5.343 11 C -0.011 4.011 12 C -0.166 4.166 13 C 0.025 3.975 14 O -0.299 6.299 15 C 0.012 3.988 16 C 0.021 3.979 17 N -0.367 5.367 18 C -0.365 4.365 19 H 0.104 0.896 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.811 3.189 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.215 1.215 26 C -0.006 4.006 27 C -0.184 4.184 28 C -0.007 4.007 29 C -0.150 4.150 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.033 0.967 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.100 0.900 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.003 14.642 -9.552 28.102 hybrid contribution 1.368 -0.545 0.476 1.548 sum -20.635 14.097 -9.076 26.587 Atomic orbital electron populations 1.21777 0.93832 1.02470 1.01750 1.21956 0.96337 0.98706 0.94691 0.92412 1.22591 0.94888 1.00450 0.97106 1.22318 0.98395 1.02126 0.91665 1.22094 0.91827 1.02948 0.96417 0.86292 1.21215 0.84770 0.83758 0.79587 1.90646 1.82775 1.24808 1.48450 1.48289 1.12952 1.16029 1.57048 1.22018 1.05002 0.78763 0.95336 1.21979 0.95281 1.00309 0.99057 1.22279 0.97170 0.87831 0.90228 1.87935 1.21659 1.61472 1.58876 1.24375 0.80367 0.97026 0.97012 1.22666 0.89872 0.93393 0.92009 1.46068 1.18958 1.55769 1.15916 1.19456 0.94480 1.22309 1.00229 0.89565 1.25693 1.02845 1.01003 0.96447 1.70020 1.40629 1.41866 1.07675 0.84944 0.78671 0.77422 0.77869 1.18866 1.21914 1.21529 1.22866 0.90936 0.92366 0.94447 1.22350 1.02479 0.94997 0.98595 1.21520 0.86302 0.97683 0.95227 1.22220 0.95352 0.98976 0.98494 0.93161 0.92044 0.91579 0.89457 0.90752 0.92896 0.88528 0.89167 0.86258 0.91308 0.89039 0.91582 0.88775 0.96670 0.93488 0.94079 0.91748 0.93813 0.90406 0.92014 0.89961 0.90232 0.89990 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.12 71.98 0.66 -0.75 16 2 C -0.10 -1.28 3.46 -9.72 -0.03 -1.31 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.07 6.33 31.91 0.20 -0.87 16 5 C -0.11 -1.19 6.36 31.69 0.20 -0.99 16 6 C -0.11 -1.58 2.50 -10.82 -0.03 -1.61 16 7 H 0.12 1.12 6.16 -2.39 -0.01 1.10 16 8 C 0.52 11.16 6.71 87.66 0.59 11.74 16 9 O -0.59 -17.73 14.90 -3.06 -0.05 -17.77 16 10 N -0.61 -11.57 2.97 -818.88 -2.43 -14.01 16 11 C 0.11 1.49 6.32 86.36 0.55 2.04 16 12 C -0.13 -2.42 5.73 30.67 0.18 -2.24 16 13 C 0.08 2.03 2.45 30.64 0.08 2.11 16 14 O -0.38 -12.62 10.01 -148.98 -1.49 -14.11 16 15 C 0.07 2.70 4.30 31.25 0.13 2.83 16 16 C 0.15 7.14 7.36 86.44 0.64 7.78 16 17 N -0.64 -33.70 3.70 -720.74 -2.67 -36.37 16 18 C -0.24 -13.49 10.70 84.03 0.90 -12.59 16 19 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 21 N -0.95 -57.66 11.39 21.65 0.25 -57.41 16 22 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 C 0.12 4.99 8.77 86.49 0.76 5.75 16 27 C -0.15 -3.33 5.70 30.69 0.17 -3.15 16 28 C 0.12 2.40 6.44 86.36 0.56 2.96 16 29 C -0.11 -1.75 5.91 31.32 0.19 -1.57 16 30 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 33 H 0.09 0.59 8.04 -2.39 -0.02 0.57 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.79 7.85 -2.39 -0.02 0.77 16 36 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.12 0.97 5.41 -2.39 -0.01 0.95 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.60 7.74 -2.38 -0.02 1.58 16 42 H 0.09 3.32 7.80 -2.39 -0.02 3.30 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 2.51 7.17 -2.39 -0.02 2.49 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.08 1.91 7.00 -2.38 -0.02 1.90 16 52 H 0.08 1.03 7.84 -2.39 -0.02 1.01 16 53 H 0.05 1.18 6.64 -2.38 -0.02 1.16 16 Total: -1.00 -73.29 407.38 2.69 -70.59 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.86 Total: 14.63 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.19 Total: 6.75 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.86 Total: -107.79 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -1.54 Total: -31.89 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.29 2.69 -70.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093581734.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.596 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds