Wall clock time and date at job start Tue Mar 31 2020 21:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.55417 * 2 1 4 4 C 1.53296 * 109.50879 * 239.88275 * 2 1 3 5 5 N 1.47149 * 108.37274 * 187.72244 * 4 2 1 6 6 C 1.34781 * 120.99109 * 230.62049 * 5 4 2 7 7 O 1.21280 * 119.99965 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99674 * 359.97438 * 6 5 4 9 9 C 1.54263 * 110.03593 * 297.91025 * 8 6 5 10 10 C 1.54959 * 104.15887 * 217.13944 * 9 8 6 11 11 C 1.54891 * 102.78073 * 37.88604 * 10 9 8 12 12 C 1.53871 * 110.02856 * 180.68785 * 8 6 5 13 13 C 1.47153 * 118.02251 * 50.60225 * 5 4 2 14 14 C 1.53262 * 108.40902 * 309.51578 * 13 5 4 15 15 C 1.52980 * 109.39424 * 292.16898 * 14 13 5 16 16 C 1.53191 * 109.36809 * 178.86406 * 15 14 13 17 17 N 1.46988 * 108.74757 * 54.55974 * 16 15 14 18 18 C 1.36943 * 120.62577 * 126.32457 * 17 16 15 19 19 H 1.07999 * 119.99427 * 207.69218 * 18 17 16 20 20 C 1.38814 * 119.99948 * 27.68864 * 18 17 16 21 21 N 1.31611 * 120.00346 * 17.36830 * 20 18 17 22 22 Si 1.86803 * 119.99628 * 197.36745 * 20 18 17 23 23 H 1.48501 * 109.47087 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46747 * 120.00081 * 22 20 18 25 25 H 1.48494 * 109.47319 * 240.00011 * 22 20 18 26 26 C 1.46916 * 118.72944 * 306.34649 * 17 16 15 27 27 C 1.52992 * 109.35706 * 172.08525 * 14 13 5 28 28 O 1.42891 * 109.32320 * 52.14971 * 14 13 5 29 29 H 1.09002 * 109.46970 * 299.86967 * 1 2 3 30 30 H 1.09002 * 109.47237 * 59.86925 * 1 2 3 31 31 H 1.08996 * 109.47155 * 179.87631 * 1 2 3 32 32 H 1.08999 * 109.68609 * 307.44582 * 4 2 1 33 33 H 1.09001 * 109.67991 * 67.96367 * 4 2 1 34 34 H 1.09004 * 110.01230 * 59.30419 * 8 6 5 35 35 H 1.09011 * 110.48273 * 335.78085 * 9 8 6 36 36 H 1.09001 * 110.48788 * 98.42346 * 9 8 6 37 37 H 1.09005 * 110.72187 * 279.56683 * 10 9 8 38 38 H 1.09000 * 110.76743 * 156.21998 * 10 9 8 39 39 H 1.09000 * 110.48545 * 203.40720 * 11 10 9 40 40 H 1.08997 * 110.48350 * 80.76305 * 11 10 9 41 41 H 1.08995 * 110.03565 * 238.57001 * 12 8 6 42 42 H 1.09000 * 110.03558 * 0.02562 * 12 8 6 43 43 H 1.09006 * 109.67629 * 189.78628 * 13 5 4 44 44 H 1.09001 * 109.67887 * 69.24862 * 13 5 4 45 45 H 1.08999 * 109.49408 * 298.84288 * 15 14 13 46 46 H 1.09006 * 109.49222 * 58.88998 * 15 14 13 47 47 H 1.09004 * 109.58866 * 174.37348 * 16 15 14 48 48 H 1.09007 * 109.58834 * 294.79504 * 16 15 14 49 49 H 0.97000 * 120.00224 * 179.97438 * 21 20 18 50 50 H 1.09004 * 109.58872 * 293.88521 * 26 17 16 51 51 H 1.09009 * 109.70274 * 173.52806 * 26 17 16 52 52 H 1.09000 * 109.49691 * 301.10938 * 27 14 13 53 53 H 1.09001 * 109.49316 * 61.16598 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7250 -1.2499 5 7 3.5012 -0.8748 -1.1341 6 6 4.3191 -0.5004 -2.1379 7 8 5.5192 -0.6324 -2.0235 8 6 3.7421 0.0811 -3.4028 9 6 2.8343 -0.9562 -4.0953 10 6 3.0924 -0.7363 -5.6074 11 6 4.6117 -0.4391 -5.6559 12 6 4.8715 0.4102 -4.3946 13 6 4.0411 -1.4452 0.1103 14 6 3.4306 -0.6879 1.2946 15 6 3.9558 0.7488 1.3041 16 6 3.3234 1.5133 2.4713 17 7 3.5740 0.7696 3.7141 18 6 4.1578 1.3845 4.7895 19 1 4.7355 0.8054 5.4946 20 6 4.0070 2.7522 4.9731 21 7 3.0512 3.3997 4.3410 22 14 5.1607 3.6737 6.1173 23 1 6.1416 2.7239 6.7013 24 1 5.8826 4.7224 5.3529 25 1 4.3756 4.3074 7.2068 26 6 3.1866 -0.6460 3.7803 27 6 3.8207 -1.3865 2.5986 28 8 2.0075 -0.6764 1.1655 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5159 -0.8888 31 1 -0.3633 -1.0276 -0.0022 32 1 1.5764 -1.7081 -1.3207 33 1 1.8016 -0.1402 -2.1378 34 1 3.1725 0.9818 -3.1734 35 1 3.1184 -1.9672 -3.8030 36 1 1.7879 -0.7684 -3.8548 37 1 2.5202 0.1149 -5.9765 38 1 2.8567 -1.6368 -6.1746 39 1 4.8615 0.1256 -6.5542 40 1 5.1833 -1.3664 -5.6159 41 1 4.8495 1.4703 -4.6472 42 1 5.8369 0.1489 -3.9612 43 1 5.1255 -1.3354 0.1241 44 1 3.7778 -2.5010 0.1746 45 1 5.0395 0.7392 1.4202 46 1 3.6950 1.2376 0.3653 47 1 3.7688 2.5056 2.5424 48 1 2.2491 1.6035 2.3098 49 1 2.9457 4.3553 4.4696 50 1 2.1013 -0.7309 3.7249 51 1 3.5398 -1.0804 4.7157 52 1 3.4634 -2.4162 2.5807 53 1 4.9055 -1.3797 2.7045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098554155.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:52 Heat of formation + Delta-G solvation = -82.030798 kcal Electronic energy + Delta-G solvation = -32029.761060 eV Core-core repulsion = 28093.697731 eV Total energy + Delta-G solvation = -3936.063329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.05088 -40.48045 -38.07295 -37.91499 -35.81982 -35.13504 -33.21468 -31.86044 -31.33136 -30.51374 -29.59707 -28.33396 -27.31237 -25.90364 -24.22057 -23.31034 -22.76475 -21.60751 -21.50639 -20.42015 -19.77809 -18.89749 -18.56871 -17.39317 -17.06244 -16.89602 -16.63494 -16.27292 -16.01614 -15.73482 -15.48034 -15.28667 -15.03859 -14.90167 -14.69286 -14.31670 -14.26338 -13.83988 -13.43667 -13.32964 -13.14392 -13.12220 -12.92186 -12.84141 -12.67657 -12.63028 -12.57027 -12.31005 -12.23438 -12.03689 -12.02027 -11.95620 -11.81644 -11.75808 -11.66410 -11.44899 -11.39082 -11.21481 -10.81020 -10.69776 -10.54571 -9.52507 -8.68986 -7.89250 -5.33744 1.43064 1.45071 1.54529 1.55726 1.84817 2.48693 2.70188 3.24950 3.35728 3.55116 3.61809 3.67404 3.71833 3.82003 3.88890 3.92715 4.07826 4.17544 4.21870 4.39306 4.42406 4.43932 4.45050 4.53988 4.58414 4.60220 4.65776 4.66801 4.68135 4.75544 4.82690 4.83206 4.92472 4.95345 4.97951 5.03570 5.09320 5.11479 5.14385 5.22527 5.23884 5.29199 5.32345 5.35380 5.42884 5.47042 5.47773 5.62327 5.68638 6.32221 6.34876 6.38576 7.08225 7.12756 7.84439 8.37439 9.17385 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003301 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.144561 B = 8479.887916 C = 8971.729446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.043 0.957 4 C 0.083 3.917 5 N -0.610 5.610 6 C 0.514 3.486 7 O -0.584 6.584 8 C -0.111 4.111 9 C -0.112 4.112 10 C -0.117 4.117 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.097 3.903 14 C 0.127 3.873 15 C -0.144 4.144 16 C 0.196 3.804 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.150 3.850 27 C -0.110 4.110 28 O -0.373 6.373 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.045 0.955 48 H -0.001 1.001 49 H 0.249 0.751 50 H 0.017 0.983 51 H 0.055 0.945 52 H 0.092 0.908 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -10.500 -21.272 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.039 4.039 5 N -0.341 5.341 6 C 0.304 3.696 7 O -0.465 6.465 8 C -0.132 4.132 9 C -0.149 4.149 10 C -0.154 4.154 11 C -0.160 4.160 12 C -0.161 4.161 13 C -0.027 4.027 14 C 0.087 3.913 15 C -0.183 4.183 16 C 0.070 3.930 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.025 3.975 27 C -0.149 4.149 28 O -0.292 6.292 29 H 0.064 0.936 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.017 0.983 49 H 0.058 0.942 50 H 0.035 0.965 51 H 0.074 0.926 52 H 0.110 0.890 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.034 -10.516 -21.046 24.059 hybrid contribution 0.989 1.173 1.044 1.856 sum -4.045 -9.343 -20.002 22.444 Atomic orbital electron populations 1.21700 0.90444 1.03797 1.03243 1.22668 0.96873 0.95135 0.85195 0.93885 1.22820 0.78314 1.03211 0.99549 1.48184 1.08016 1.62351 1.15589 1.21324 0.86075 0.76673 0.85490 1.90638 1.17000 1.57082 1.81749 1.22044 0.98891 1.00840 0.91421 1.22524 0.99492 0.97147 0.95746 1.22524 0.95206 1.02791 0.94904 1.22360 0.97290 0.99321 0.97046 1.22177 0.97864 1.00946 0.95126 1.22209 0.99571 0.97807 0.83074 1.21508 0.81283 0.93845 0.94713 1.22452 0.99800 0.97262 0.98784 1.20304 0.95002 0.94096 0.83565 1.44318 1.70870 1.07313 1.10803 1.19573 1.23866 0.91870 1.03910 0.91493 1.25790 0.98951 0.98894 1.01103 1.70197 1.32072 1.08164 1.47577 0.85232 0.78750 0.78450 0.78196 1.19072 1.21871 1.21667 1.20883 0.96107 0.84217 0.96317 1.21892 1.00748 0.99400 0.92902 1.87983 1.20187 1.76667 1.44384 0.93596 0.87991 0.90458 0.88418 0.85882 0.86960 0.92114 0.88052 0.89636 0.90139 0.90264 0.92691 0.90504 0.92476 0.90355 0.89266 0.93548 0.92730 0.93645 0.98290 0.94202 0.96526 0.92613 0.88995 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.57 71.98 0.69 -1.97 16 2 C 0.06 1.53 3.02 30.69 0.09 1.62 16 3 H 0.04 1.32 6.29 -2.39 -0.02 1.31 16 4 C 0.08 1.56 5.03 86.35 0.43 1.99 16 5 N -0.61 -15.58 2.52 -817.40 -2.06 -17.64 16 6 C 0.51 14.13 6.95 87.66 0.61 14.74 16 7 O -0.58 -21.21 14.68 -3.03 -0.04 -21.26 16 8 C -0.11 -2.07 2.41 -10.82 -0.03 -2.09 16 9 C -0.11 -1.39 5.14 31.69 0.16 -1.22 16 10 C -0.12 -1.21 6.91 31.91 0.22 -0.99 16 11 C -0.12 -1.78 6.83 31.67 0.22 -1.57 16 12 C -0.12 -2.42 6.40 31.32 0.20 -2.22 16 13 C 0.10 2.84 5.29 86.34 0.46 3.30 16 14 C 0.13 4.33 0.68 -10.72 -0.01 4.32 16 15 C -0.14 -5.92 4.32 30.65 0.13 -5.79 16 16 C 0.20 9.99 5.08 86.35 0.44 10.43 16 17 N -0.61 -32.01 3.00 -698.93 -2.09 -34.10 16 18 C -0.26 -14.94 9.59 84.03 0.81 -14.13 16 19 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 20 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 21 N -0.93 -56.79 11.19 21.65 0.24 -56.55 16 22 Si 0.97 46.26 29.59 68.60 2.03 48.29 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 26 C 0.15 6.50 6.28 86.36 0.54 7.05 16 27 C -0.11 -3.83 5.10 30.66 0.16 -3.67 16 28 O -0.37 -12.36 8.64 -148.98 -1.29 -13.65 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.55 4.57 -2.39 -0.01 1.54 16 34 H 0.11 1.77 7.64 -2.39 -0.02 1.76 16 35 H 0.06 0.91 7.85 -2.38 -0.02 0.89 16 36 H 0.10 0.75 6.72 -2.39 -0.02 0.73 16 37 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.52 6.39 -2.39 -0.02 1.50 16 43 H 0.08 2.63 7.07 -2.38 -0.02 2.61 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.05 2.14 6.16 -2.38 -0.01 2.13 16 47 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 48 H 0.00 -0.05 7.83 -2.38 -0.02 -0.07 16 49 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.02 0.76 7.83 -2.38 -0.02 0.74 16 51 H 0.06 2.33 7.94 -2.38 -0.02 2.31 16 52 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 53 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -74.09 388.80 3.20 -70.89 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.88 Total: 16.81 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.54 Total: 7.21 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.91 Total: -108.29 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.33 Total: -34.91 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -74.09 3.20 -70.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098554155.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.143 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds