Wall clock time and date at job start Tue Mar 31 2020 21:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.51007 * 2 1 4 4 C 1.53286 * 109.51381 * 120.10193 * 2 1 3 5 5 N 1.47153 * 108.37754 * 172.27008 * 4 2 1 6 6 C 1.34779 * 120.99128 * 129.42959 * 5 4 2 7 7 O 1.21284 * 120.00043 * 180.02562 * 6 5 4 8 8 C 1.50695 * 120.00000 * 359.97438 * 6 5 4 9 9 C 1.53000 * 109.47374 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47249 * 179.97438 * 9 8 6 11 11 C 1.53005 * 117.49943 * 243.61888 * 10 9 8 12 12 C 1.53002 * 59.99947 * 252.50939 * 11 10 9 13 13 C 1.47153 * 118.02007 * 309.40264 * 5 4 2 14 14 C 1.53260 * 108.40679 * 50.48921 * 13 5 4 15 15 C 1.52997 * 109.36121 * 187.90060 * 14 13 5 16 16 C 1.53188 * 109.34917 * 178.85396 * 15 14 13 17 17 N 1.46933 * 108.76548 * 54.58684 * 16 15 14 18 18 C 1.36939 * 120.64321 * 126.33762 * 17 16 15 19 19 H 1.07992 * 119.99963 * 332.60499 * 18 17 16 20 20 C 1.38816 * 119.99917 * 152.60006 * 18 17 16 21 21 N 1.31618 * 119.99884 * 159.36183 * 20 18 17 22 22 Si 1.86800 * 120.00086 * 339.36712 * 20 18 17 23 23 H 1.48499 * 109.47086 * 92.93606 * 22 20 18 24 24 H 1.48504 * 109.46887 * 212.93996 * 22 20 18 25 25 H 1.48503 * 109.46973 * 332.93680 * 22 20 18 26 26 C 1.46923 * 118.71440 * 306.31396 * 17 16 15 27 27 C 1.52980 * 109.38846 * 67.81301 * 14 13 5 28 28 O 1.42890 * 109.32123 * 307.83847 * 14 13 5 29 29 H 1.09000 * 109.47138 * 299.89410 * 1 2 3 30 30 H 1.09007 * 109.47064 * 179.89833 * 1 2 3 31 31 H 1.08993 * 109.47265 * 59.90093 * 1 2 3 32 32 H 1.09003 * 109.68584 * 291.99072 * 4 2 1 33 33 H 1.09005 * 109.68791 * 52.50737 * 4 2 1 34 34 H 1.09011 * 109.46938 * 300.00117 * 8 6 5 35 35 H 1.08993 * 109.47260 * 59.99914 * 8 6 5 36 36 H 1.08999 * 109.46846 * 300.00098 * 9 8 6 37 37 H 1.09005 * 109.47166 * 59.99834 * 9 8 6 38 38 H 1.08996 * 115.55425 * 29.32907 * 10 9 8 39 39 H 1.09003 * 117.49722 * 359.97438 * 11 10 9 40 40 H 1.08998 * 117.49714 * 145.02110 * 11 10 9 41 41 H 1.08997 * 117.49806 * 252.50411 * 12 11 10 42 42 H 1.09003 * 117.51389 * 107.48214 * 12 11 10 43 43 H 1.08997 * 109.67735 * 170.22142 * 13 5 4 44 44 H 1.09000 * 109.67631 * 290.72293 * 13 5 4 45 45 H 1.08997 * 109.48835 * 298.82160 * 15 14 13 46 46 H 1.09000 * 109.48785 * 58.89397 * 15 14 13 47 47 H 1.08997 * 109.59209 * 294.79957 * 16 15 14 48 48 H 1.09000 * 109.58914 * 174.36582 * 16 15 14 49 49 H 0.96996 * 120.00255 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.59080 * 293.87957 * 26 17 16 51 51 H 1.09002 * 109.58602 * 173.46044 * 26 17 16 52 52 H 1.08997 * 109.49641 * 301.07205 * 27 14 13 53 53 H 1.09003 * 109.49000 * 61.14771 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 1.2500 5 7 3.5013 -0.8746 1.1342 6 6 4.3192 -0.5009 2.1381 7 8 5.5194 -0.6321 2.0233 8 6 3.7424 0.0811 3.4029 9 6 4.8768 0.4189 4.3724 10 6 4.2912 1.0104 5.6562 11 6 4.6537 2.4573 5.9968 12 6 5.2594 1.3068 6.8032 13 6 4.0410 -1.4454 -0.1102 14 6 3.4305 -0.6882 -1.2946 15 6 3.8206 -1.3868 -2.5986 16 6 3.1867 -0.6464 -3.7804 17 7 3.5745 0.7693 -3.7141 18 6 4.1579 1.3842 -4.7897 19 1 4.7314 0.8044 -5.4976 20 6 4.0120 2.7529 -4.9700 21 7 4.8645 3.4116 -5.7261 22 14 2.6059 3.6598 -4.1394 23 1 3.0654 4.1949 -2.8326 24 1 2.1606 4.7814 -5.0048 25 1 1.4739 2.7238 -3.9205 26 6 3.3238 1.5125 -2.4718 27 6 3.9558 0.7486 -1.3039 28 8 2.0075 -0.6766 -1.1654 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 -1.0277 -0.0018 31 1 -0.3633 0.5153 -0.8890 32 1 1.8025 -0.1393 2.1377 33 1 1.5759 -1.7074 1.3215 34 1 3.1862 0.9879 3.1648 35 1 3.0733 -0.6448 3.8647 36 1 5.4333 -0.4876 4.6104 37 1 5.5456 1.1451 3.9103 38 1 3.2906 0.6669 5.9184 39 1 5.3097 2.9877 5.3065 40 1 3.8914 3.0660 6.4831 41 1 4.8957 1.1587 7.8200 42 1 6.3136 1.0801 6.6433 43 1 5.1254 -1.3359 -0.1241 44 1 3.7780 -2.5012 -0.1740 45 1 4.9054 -1.3798 -2.7045 46 1 3.4633 -2.4164 -2.5805 47 1 2.1015 -0.7310 -3.7250 48 1 3.5418 -1.0791 -4.7157 49 1 4.7628 4.3680 -5.8518 50 1 2.2496 1.6030 -2.3106 51 1 3.7694 2.5047 -2.5433 52 1 3.6944 1.2376 -0.3655 53 1 5.0396 0.7388 -1.4198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098577848.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:14 Heat of formation + Delta-G solvation = -52.072013 kcal Electronic energy + Delta-G solvation = -31418.693003 eV Core-core repulsion = 27483.928784 eV Total energy + Delta-G solvation = -3934.764219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.95467 -40.24883 -38.42511 -38.12285 -35.79433 -35.19189 -33.65604 -33.08959 -32.08438 -31.51470 -29.00992 -27.34962 -26.45248 -24.89284 -24.64876 -23.29055 -23.19682 -22.16078 -21.32367 -20.70565 -19.99754 -18.97817 -18.18635 -17.52950 -17.31823 -16.90204 -16.82099 -16.26147 -16.17405 -15.86109 -15.69236 -15.34327 -15.24266 -15.08620 -14.73124 -14.42502 -14.21864 -14.14592 -13.69722 -13.59839 -13.44636 -13.23435 -13.14973 -12.94657 -12.79000 -12.61682 -12.48002 -12.44855 -12.27763 -12.26532 -12.18152 -12.13637 -11.85474 -11.66718 -11.45609 -11.40766 -11.16813 -10.89933 -10.81053 -10.74544 -10.67791 -9.53918 -8.94507 -8.19644 -5.50560 1.23893 1.35575 1.45932 1.56540 1.85605 2.38228 2.64570 2.91249 3.01965 3.29357 3.41937 3.61299 3.68686 3.74901 3.80696 3.88892 4.03092 4.04405 4.10736 4.20615 4.24143 4.26401 4.34431 4.37691 4.41566 4.48662 4.56862 4.60645 4.62727 4.66095 4.72124 4.74304 4.80920 4.81394 4.85663 4.94413 4.99145 5.02667 5.05652 5.06570 5.07718 5.11608 5.13476 5.27787 5.31051 5.36439 5.43991 5.45057 5.84076 6.10283 6.30644 6.33142 6.88935 7.10053 7.59730 8.01910 9.00435 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003362 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.612743 B = 8325.523150 C = 8937.853669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 H 0.049 0.951 4 C 0.083 3.917 5 N -0.614 5.614 6 C 0.506 3.494 7 O -0.587 6.587 8 C -0.127 4.127 9 C -0.072 4.072 10 C -0.149 4.149 11 C -0.187 4.187 12 C -0.185 4.185 13 C 0.097 3.903 14 C 0.127 3.873 15 C -0.112 4.112 16 C 0.151 3.849 17 N -0.619 5.619 18 C -0.246 4.246 19 H 0.055 0.945 20 C -0.037 4.037 21 N -0.957 5.957 22 Si 0.946 3.054 23 H -0.280 1.280 24 H -0.308 1.308 25 H -0.261 1.261 26 C 0.137 3.863 27 C -0.143 4.143 28 O -0.370 6.370 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.037 0.963 48 H 0.058 0.942 49 H 0.261 0.739 50 H 0.032 0.968 51 H 0.041 0.959 52 H 0.066 0.934 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -9.719 26.225 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.003 4.003 3 H 0.067 0.933 4 C -0.039 4.039 5 N -0.347 5.347 6 C 0.297 3.703 7 O -0.468 6.468 8 C -0.166 4.166 9 C -0.110 4.110 10 C -0.167 4.167 11 C -0.224 4.224 12 C -0.222 4.222 13 C -0.027 4.027 14 C 0.086 3.914 15 C -0.151 4.151 16 C 0.027 3.973 17 N -0.343 5.343 18 C -0.376 4.376 19 H 0.072 0.928 20 C -0.231 4.231 21 N -0.604 5.604 22 Si 0.775 3.225 23 H -0.207 1.207 24 H -0.237 1.237 25 H -0.185 1.185 26 C 0.012 3.988 27 C -0.182 4.182 28 O -0.290 6.290 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.050 0.950 51 H 0.059 0.941 52 H 0.085 0.915 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.020 -9.760 25.962 29.491 hybrid contribution 0.342 1.154 -0.405 1.270 sum -9.677 -8.606 25.557 28.651 Atomic orbital electron populations 1.21720 0.90330 1.03898 1.03392 1.22732 0.96944 0.95346 0.85250 0.93317 1.22726 0.78085 1.03381 0.99729 1.48290 1.08147 1.62545 1.15734 1.21524 0.86169 0.76778 0.85806 1.90691 1.17113 1.56865 1.82094 1.21729 1.00081 1.03521 0.91263 1.20849 0.96476 1.00477 0.93193 1.22341 1.00635 0.98384 0.95369 1.23108 1.04013 0.91385 1.03845 1.23036 0.98834 1.03423 0.96908 1.22169 0.99607 0.97895 0.83005 1.21496 0.81456 0.93499 0.94929 1.21895 1.00811 0.99771 0.92638 1.20968 0.97073 0.82506 0.96792 1.44478 1.71423 1.08640 1.09774 1.18906 1.23687 0.91779 1.03210 0.92753 1.25902 1.00403 0.97657 0.99181 1.69964 1.37252 1.08376 1.44781 0.85913 0.82007 0.77722 0.76882 1.20729 1.23660 1.18501 1.21128 0.97100 0.94422 0.86118 1.22372 1.00321 0.97397 0.98136 1.87995 1.19842 1.76807 1.44350 0.87970 0.90562 0.93289 0.85548 0.88429 0.86900 0.85466 0.92174 0.93527 0.85481 0.89916 0.87548 0.87414 0.89677 0.90408 0.89104 0.91239 0.88424 0.94473 0.92363 0.92977 0.94973 0.94112 0.91517 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.57 71.98 0.69 -1.38 16 2 C 0.06 1.15 3.01 30.69 0.09 1.24 16 3 H 0.05 1.19 6.29 -2.39 -0.02 1.17 16 4 C 0.08 1.20 5.83 86.35 0.50 1.71 16 5 N -0.61 -13.47 2.52 -817.42 -2.06 -15.53 16 6 C 0.51 12.10 7.71 87.66 0.68 12.78 16 7 O -0.59 -19.73 15.45 -3.04 -0.05 -19.77 16 8 C -0.13 -1.80 4.03 29.85 0.12 -1.68 16 9 C -0.07 -1.24 4.79 30.59 0.15 -1.09 16 10 C -0.15 -1.85 5.74 -10.79 -0.06 -1.92 16 11 C -0.19 -2.46 10.18 30.60 0.31 -2.15 16 12 C -0.19 -2.37 10.25 30.60 0.31 -2.06 16 13 C 0.10 2.53 5.29 86.34 0.46 2.99 16 14 C 0.13 3.83 0.68 -10.71 -0.01 3.83 16 15 C -0.11 -3.55 5.10 30.66 0.16 -3.39 16 16 C 0.15 5.99 6.28 86.36 0.54 6.53 16 17 N -0.62 -30.19 2.77 -699.08 -1.94 -32.13 16 18 C -0.25 -14.41 10.04 84.03 0.84 -13.57 16 19 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 20 C -0.04 -2.23 5.23 84.86 0.44 -1.78 16 21 N -0.96 -61.86 13.97 21.65 0.30 -61.55 16 22 Si 0.95 48.18 24.35 68.60 1.67 49.85 16 23 H -0.28 -13.64 6.62 99.48 0.66 -12.98 16 24 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 25 H -0.26 -12.74 6.63 99.48 0.66 -12.08 16 26 C 0.14 6.13 3.97 86.36 0.34 6.47 16 27 C -0.14 -5.27 4.33 30.65 0.13 -5.13 16 28 O -0.37 -10.43 8.64 -148.98 -1.29 -11.71 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.13 0.96 6.05 -2.39 -0.01 0.94 16 33 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.11 1.24 7.66 -2.38 -0.02 1.22 16 35 H 0.13 0.98 8.01 -2.39 -0.02 0.96 16 36 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.05 1.03 7.83 -2.38 -0.02 1.02 16 38 H 0.13 1.03 8.07 -2.39 -0.02 1.01 16 39 H 0.08 1.29 8.03 -2.39 -0.02 1.27 16 40 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 2.41 7.07 -2.39 -0.02 2.40 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.04 1.45 7.83 -2.39 -0.02 1.43 16 48 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 49 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 50 H 0.03 1.41 6.76 -2.39 -0.02 1.40 16 51 H 0.04 2.04 4.49 -2.39 -0.01 2.03 16 52 H 0.07 2.25 6.15 -2.39 -0.01 2.24 16 53 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -77.32 396.31 3.12 -74.20 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.78 Total: 15.26 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.70 Total: 1.39 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.69 Total: -109.21 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -1.33 Total: -31.49 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.67 Total: 49.85 kcal Total: -77.32 3.12 -74.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098577848.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.124 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds