Wall clock time and date at job start Tue Mar 31 2020 21:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.51217 * 2 1 4 4 C 1.53288 * 109.55341 * 239.87794 * 2 1 3 5 5 N 1.47154 * 108.37808 * 187.70830 * 4 2 1 6 6 C 1.34776 * 120.98798 * 230.61638 * 5 4 2 7 7 O 1.21287 * 119.99780 * 179.97438 * 6 5 4 8 8 C 1.50700 * 120.00056 * 359.97438 * 6 5 4 9 9 C 1.53004 * 109.46743 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46845 * 180.02562 * 9 8 6 11 11 C 1.52997 * 117.49881 * 243.75023 * 10 9 8 12 12 C 1.52999 * 117.49899 * 175.08992 * 10 9 8 13 13 C 1.47158 * 118.02035 * 50.59389 * 5 4 2 14 14 C 1.53258 * 108.40619 * 309.51347 * 13 5 4 15 15 C 1.52997 * 109.35339 * 172.09736 * 14 13 5 16 16 C 1.53193 * 109.34492 * 181.13996 * 15 14 13 17 17 N 1.46934 * 108.77292 * 305.41334 * 16 15 14 18 18 C 1.36935 * 120.64434 * 233.66395 * 17 16 15 19 19 H 1.07995 * 119.99817 * 151.84246 * 18 17 16 20 20 C 1.38813 * 119.99897 * 331.83657 * 18 17 16 21 21 N 1.31616 * 120.00152 * 343.07000 * 20 18 17 22 22 Si 1.86796 * 119.99721 * 163.06102 * 20 18 17 23 23 H 1.48503 * 109.47213 * 90.00760 * 22 20 18 24 24 H 1.48499 * 109.47048 * 210.00609 * 22 20 18 25 25 H 1.48498 * 109.47533 * 330.00336 * 22 20 18 26 26 C 1.46923 * 118.70989 * 53.68292 * 17 16 15 27 27 C 1.52984 * 109.38939 * 292.18005 * 14 13 5 28 28 O 1.42891 * 109.32351 * 52.15841 * 14 13 5 29 29 H 1.09003 * 109.47218 * 299.91107 * 1 2 3 30 30 H 1.09007 * 109.46678 * 59.90699 * 1 2 3 31 31 H 1.08996 * 109.47155 * 179.90340 * 1 2 3 32 32 H 1.09001 * 109.68208 * 307.42388 * 4 2 1 33 33 H 1.09000 * 109.68633 * 67.94591 * 4 2 1 34 34 H 1.08990 * 109.47135 * 299.99606 * 8 6 5 35 35 H 1.09000 * 109.47163 * 60.00009 * 8 6 5 36 36 H 1.08994 * 109.47633 * 300.00004 * 9 8 6 37 37 H 1.09000 * 109.47087 * 60.00203 * 9 8 6 38 38 H 1.08998 * 115.55153 * 29.41420 * 10 9 8 39 39 H 1.08999 * 117.50338 * 359.97438 * 11 10 9 40 40 H 1.09001 * 117.50227 * 145.02263 * 11 10 9 41 41 H 1.09000 * 117.49614 * 214.97709 * 12 10 9 42 42 H 1.09001 * 117.50042 * 359.97438 * 12 10 9 43 43 H 1.08997 * 109.67574 * 69.24413 * 13 5 4 44 44 H 1.09001 * 109.67244 * 189.74689 * 13 5 4 45 45 H 1.08996 * 109.49220 * 301.09683 * 15 14 13 46 46 H 1.09000 * 109.49217 * 61.18302 * 15 14 13 47 47 H 1.08997 * 109.58740 * 185.62464 * 16 15 14 48 48 H 1.09008 * 109.70470 * 65.27043 * 16 15 14 49 49 H 0.97001 * 120.00317 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58682 * 186.54399 * 26 17 16 51 51 H 1.09001 * 109.70574 * 66.19241 * 26 17 16 52 52 H 1.09000 * 109.49389 * 298.85914 * 27 14 13 53 53 H 1.08993 * 109.49399 * 58.91408 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0430 -0.7249 -1.2494 5 7 3.5023 -0.8739 -1.1330 6 6 4.3204 -0.4992 -2.1364 7 8 5.5207 -0.6297 -2.0211 8 6 3.7437 0.0817 -3.4017 9 6 4.8783 0.4208 -4.3705 10 6 4.2929 1.0112 -5.6548 11 6 4.5007 0.2266 -6.9518 12 6 5.2762 1.5238 -6.7090 13 6 4.0419 -1.4436 0.1119 14 6 3.4304 -0.6863 1.2957 15 6 3.8205 -1.3841 2.6001 16 6 3.1857 -0.6435 3.7814 17 7 3.5726 0.7725 3.7147 18 6 4.1552 1.3882 4.7902 19 1 4.8282 2.2189 4.6375 20 6 3.8807 0.9446 6.0766 21 7 2.8344 0.1777 6.2990 22 14 4.9963 1.4361 7.4919 23 1 4.5063 2.7032 8.0915 24 1 4.9899 0.3662 8.5217 25 1 6.3796 1.6294 6.9878 26 6 3.3219 1.5149 2.4719 27 6 3.9548 0.7509 1.3046 28 8 2.0074 -0.6756 1.1660 29 1 -0.3634 0.5125 0.8908 30 1 -0.3633 0.5153 -0.8892 31 1 -0.3633 -1.0276 -0.0017 32 1 1.5781 -1.7083 -1.3202 33 1 1.8028 -0.1405 -2.1376 34 1 3.0760 -0.6453 -3.8639 35 1 3.1861 0.9877 -3.1643 36 1 5.5458 1.1480 -3.9082 37 1 5.4363 -0.4849 -4.6079 38 1 3.3532 1.5511 -5.5384 39 1 5.0548 -0.7100 -6.8902 40 1 3.6979 0.2507 -7.6887 41 1 4.9832 2.4008 -7.2863 42 1 6.3402 1.4408 -6.4873 43 1 3.7791 -2.4995 0.1765 44 1 5.1263 -1.3339 0.1259 45 1 3.4637 -2.4139 2.5825 46 1 4.9053 -1.3762 2.7065 47 1 3.5406 -1.0756 4.7169 48 1 2.1003 -0.7286 3.7281 49 1 2.6428 -0.1326 7.1978 50 1 3.7669 2.5074 2.5430 51 1 2.2481 1.6069 2.3090 52 1 5.0386 0.7419 1.4209 53 1 3.6938 1.2391 0.3658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098577850.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:18 Heat of formation + Delta-G solvation = -54.824153 kcal Electronic energy + Delta-G solvation = -31109.579409 eV Core-core repulsion = 27174.695848 eV Total energy + Delta-G solvation = -3934.883561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.89020 -40.16775 -38.36520 -37.94432 -35.75748 -35.11005 -33.47617 -33.03107 -31.69636 -31.23318 -28.88401 -27.32973 -26.51835 -25.02069 -24.15254 -23.19919 -23.06024 -22.15478 -21.29564 -20.55099 -19.95685 -18.88112 -18.14621 -17.32871 -17.01522 -16.98597 -16.63436 -16.38823 -16.01077 -15.79540 -15.31961 -15.28626 -15.03738 -15.01815 -14.87201 -14.40089 -14.14695 -13.83981 -13.37214 -13.36457 -13.23921 -13.07457 -13.00448 -12.82459 -12.74953 -12.62897 -12.57887 -12.42634 -12.25779 -12.21408 -12.11632 -12.07634 -11.85483 -11.73607 -11.43638 -11.31437 -11.14019 -10.80199 -10.74945 -10.69754 -10.53529 -9.50213 -8.67253 -7.87698 -5.33410 1.44890 1.46632 1.56590 1.58972 1.86945 2.50052 2.72324 2.93666 3.26449 3.42639 3.59621 3.70079 3.78459 3.78887 3.91329 3.94770 4.04070 4.08761 4.15373 4.25086 4.30574 4.34138 4.37812 4.44681 4.48363 4.59453 4.63579 4.67517 4.69022 4.73883 4.81521 4.83297 4.85990 4.89477 4.95759 5.04366 5.05976 5.08813 5.10650 5.14196 5.15470 5.26782 5.30386 5.33741 5.39831 5.45110 5.46642 5.63134 5.78720 6.35696 6.38294 6.41660 7.11873 7.14417 7.85237 8.38577 9.18533 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018911 B = 0.002717 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.245157 B =10303.589132 C =10935.403838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.057 0.943 4 C 0.082 3.918 5 N -0.613 5.613 6 C 0.508 3.492 7 O -0.588 6.588 8 C -0.126 4.126 9 C -0.071 4.071 10 C -0.153 4.153 11 C -0.179 4.179 12 C -0.190 4.190 13 C 0.097 3.903 14 C 0.128 3.872 15 C -0.118 4.118 16 C 0.191 3.809 17 N -0.608 5.608 18 C -0.266 4.266 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.273 1.273 26 C 0.154 3.846 27 C -0.137 4.137 28 O -0.377 6.377 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.001 0.999 49 H 0.251 0.749 50 H 0.046 0.954 51 H 0.015 0.985 52 H 0.053 0.947 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -1.494 -26.288 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 H 0.074 0.926 4 C -0.040 4.040 5 N -0.345 5.345 6 C 0.299 3.701 7 O -0.468 6.468 8 C -0.166 4.166 9 C -0.109 4.109 10 C -0.171 4.171 11 C -0.215 4.215 12 C -0.227 4.227 13 C -0.027 4.027 14 C 0.088 3.912 15 C -0.158 4.158 16 C 0.065 3.935 17 N -0.331 5.331 18 C -0.396 4.396 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.198 1.198 26 C 0.029 3.971 27 C -0.176 4.176 28 O -0.296 6.296 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.019 0.981 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.033 0.967 52 H 0.071 0.929 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.723 -1.702 -25.959 26.280 hybrid contribution 0.841 0.279 1.348 1.613 sum -2.882 -1.423 -24.611 24.820 Atomic orbital electron populations 1.21713 0.90723 1.03515 1.03375 1.22715 0.96697 0.95597 0.84993 0.92552 1.22724 0.78135 1.03167 0.99935 1.48285 1.08111 1.62471 1.15651 1.21536 0.86139 0.76772 0.85693 1.90684 1.17077 1.56961 1.82082 1.21731 1.00100 1.03706 0.91018 1.20842 0.96456 1.00205 0.93398 1.22335 1.01236 1.04070 0.89435 1.23123 1.03438 0.95504 0.99482 1.23048 0.97712 0.98643 1.03295 1.22145 0.99642 0.97580 0.83302 1.21457 0.81324 0.94370 0.94048 1.22011 1.00453 0.99202 0.94118 1.20378 0.94661 0.83263 0.95196 1.44272 1.71206 1.06818 1.10834 1.19460 1.19357 1.15146 0.85625 0.92019 1.25793 0.97974 1.00952 0.99697 1.70193 1.26945 1.40028 1.20584 0.85299 0.79045 0.77158 0.79064 1.21017 1.21625 1.19795 1.20809 0.96282 0.93939 0.86095 1.22316 1.00100 0.96544 0.98634 1.88049 1.20182 1.76999 1.44413 0.93462 0.87596 0.91287 0.89157 0.85148 0.85939 0.86385 0.92858 0.92720 0.85879 0.89299 0.87472 0.87737 0.89668 0.90162 0.90166 0.90624 0.91536 0.92957 0.98134 0.94037 0.93586 0.96712 0.92862 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.57 71.98 0.69 -1.75 16 2 C 0.06 1.33 3.01 30.69 0.09 1.43 16 3 H 0.06 1.39 6.29 -2.39 -0.02 1.38 16 4 C 0.08 1.36 5.83 86.35 0.50 1.86 16 5 N -0.61 -14.35 2.52 -817.41 -2.06 -16.41 16 6 C 0.51 12.31 7.71 87.66 0.68 12.99 16 7 O -0.59 -19.77 15.45 -3.05 -0.05 -19.81 16 8 C -0.13 -1.78 4.03 29.85 0.12 -1.66 16 9 C -0.07 -1.19 4.78 30.60 0.15 -1.05 16 10 C -0.15 -1.84 5.73 -10.79 -0.06 -1.90 16 11 C -0.18 -2.00 10.18 30.62 0.31 -1.69 16 12 C -0.19 -2.37 10.25 30.62 0.31 -2.06 16 13 C 0.10 2.83 5.29 86.34 0.46 3.28 16 14 C 0.13 4.37 0.68 -10.71 -0.01 4.36 16 15 C -0.12 -4.67 5.10 30.66 0.16 -4.51 16 16 C 0.19 9.61 5.07 86.36 0.44 10.04 16 17 N -0.61 -31.92 2.99 -699.07 -2.09 -34.01 16 18 C -0.27 -15.17 9.58 84.03 0.81 -14.36 16 19 H 0.06 3.46 7.88 -2.91 -0.02 3.44 16 20 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 21 N -0.93 -56.32 11.20 21.65 0.24 -56.08 16 22 Si 0.97 45.95 29.59 68.60 2.03 47.98 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 26 C 0.15 6.80 6.28 86.36 0.54 7.34 16 27 C -0.14 -4.98 4.33 30.65 0.13 -4.85 16 28 O -0.38 -12.44 8.65 -148.98 -1.29 -13.73 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.13 1.11 6.06 -2.39 -0.01 1.09 16 34 H 0.12 1.08 8.01 -2.39 -0.02 1.06 16 35 H 0.12 1.15 7.66 -2.39 -0.02 1.13 16 36 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.05 1.09 7.83 -2.39 -0.02 1.07 16 38 H 0.12 1.06 8.08 -2.39 -0.02 1.04 16 39 H 0.09 1.09 8.03 -2.39 -0.02 1.07 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.65 7.07 -2.39 -0.02 2.63 16 45 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.05 2.96 6.06 -2.39 -0.01 2.94 16 48 H 0.00 0.03 7.83 -2.38 -0.02 0.01 16 49 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 51 H 0.01 0.67 7.83 -2.39 -0.02 0.65 16 52 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.07 2.27 6.15 -2.39 -0.01 2.25 16 Total: -1.00 -73.81 402.78 3.38 -70.43 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.87 Total: 16.55 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.73 Total: 5.08 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.91 Total: -106.50 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.34 Total: -33.54 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.81 3.38 -70.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098577850.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.606 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds