Wall clock time and date at job start Tue Mar 31 2020 21:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.54635 * 2 1 4 4 C 1.53294 * 109.50793 * 120.11879 * 2 1 3 5 5 N 1.47157 * 108.37422 * 172.27144 * 4 2 1 6 6 C 1.34777 * 120.98894 * 129.41933 * 5 4 2 7 7 O 1.21278 * 120.00245 * 180.02562 * 6 5 4 8 8 C 1.50707 * 119.99746 * 0.02562 * 6 5 4 9 9 C 1.53000 * 109.46556 * 179.97438 * 8 6 5 10 10 C 1.53789 * 113.61248 * 272.48952 * 9 8 6 11 11 C 1.53777 * 87.08242 * 220.02307 * 10 9 8 12 12 C 1.53779 * 87.08383 * 25.43317 * 11 10 9 13 13 C 1.47153 * 118.02392 * 309.40684 * 5 4 2 14 14 C 1.53268 * 108.40633 * 50.48030 * 13 5 4 15 15 C 1.52990 * 109.35246 * 187.90948 * 14 13 5 16 16 C 1.53194 * 109.35199 * 178.86557 * 15 14 13 17 17 N 1.46934 * 108.76990 * 54.57687 * 16 15 14 18 18 C 1.36931 * 120.63870 * 126.30838 * 17 16 15 19 19 H 1.08000 * 119.99725 * 207.68718 * 18 17 16 20 20 C 1.38814 * 120.00421 * 27.69455 * 18 17 16 21 21 N 1.31613 * 119.99942 * 17.35988 * 20 18 17 22 22 Si 1.86801 * 120.00001 * 197.36577 * 20 18 17 23 23 H 1.48503 * 109.47156 * 59.99813 * 22 20 18 24 24 H 1.48496 * 109.47188 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47126 * 299.99645 * 22 20 18 26 26 C 1.46923 * 118.71550 * 306.32832 * 17 16 15 27 27 C 1.52976 * 109.38969 * 67.82747 * 14 13 5 28 28 O 1.42887 * 109.32223 * 307.84690 * 14 13 5 29 29 H 1.09009 * 109.46771 * 180.12164 * 1 2 3 30 30 H 1.09000 * 109.47326 * 300.12094 * 1 2 3 31 31 H 1.08999 * 109.47010 * 60.12686 * 1 2 3 32 32 H 1.08997 * 109.68642 * 291.99784 * 4 2 1 33 33 H 1.09001 * 109.68659 * 52.55553 * 4 2 1 34 34 H 1.08998 * 109.46679 * 299.98827 * 8 6 5 35 35 H 1.08999 * 109.47450 * 59.99503 * 8 6 5 36 36 H 1.08993 * 112.85630 * 43.79843 * 9 8 6 37 37 H 1.09001 * 113.61399 * 334.57566 * 10 9 8 38 38 H 1.08994 * 113.60880 * 105.47287 * 10 9 8 39 39 H 1.08997 * 113.62058 * 270.88356 * 11 10 9 40 40 H 1.09004 * 113.61332 * 139.97701 * 11 10 9 41 41 H 1.09000 * 113.62242 * 220.01829 * 12 11 10 42 42 H 1.09000 * 113.61823 * 89.10996 * 12 11 10 43 43 H 1.08994 * 109.67303 * 290.75537 * 13 5 4 44 44 H 1.09002 * 109.67782 * 170.21075 * 13 5 4 45 45 H 1.09002 * 109.49500 * 58.90912 * 15 14 13 46 46 H 1.08999 * 109.51408 * 298.83989 * 15 14 13 47 47 H 1.08999 * 109.58804 * 174.36076 * 16 15 14 48 48 H 1.08992 * 109.58911 * 294.79184 * 16 15 14 49 49 H 0.97002 * 119.99913 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.58253 * 293.87389 * 26 17 16 51 51 H 1.08996 * 109.58561 * 173.46015 * 26 17 16 52 52 H 1.09002 * 109.49442 * 301.05687 * 27 14 13 53 53 H 1.09002 * 109.49576 * 61.13828 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0420 -0.7251 1.2499 5 7 3.5013 -0.8750 1.1341 6 6 4.3191 -0.5014 2.1381 7 8 5.5193 -0.6326 2.0234 8 6 3.7420 0.0794 3.4034 9 6 4.8763 0.4161 4.3734 10 6 5.2849 -0.7604 5.2756 11 6 5.4171 0.2624 6.4162 12 6 4.4029 1.1290 5.6512 13 6 4.0411 -1.4453 -0.1104 14 6 3.4306 -0.6878 -1.2946 15 6 3.8208 -1.3862 -2.5987 16 6 3.1871 -0.6455 -3.7805 17 7 3.5749 0.7702 -3.7140 18 6 4.1590 1.3851 -4.7890 19 1 4.8264 2.2203 -4.6364 20 6 3.8932 0.9350 -6.0750 21 7 2.8477 0.1681 -6.3008 22 14 5.0195 1.4177 -7.4849 23 1 6.3942 0.9277 -7.2103 24 1 4.5214 0.8120 -8.7460 25 1 5.0386 2.8965 -7.6193 26 6 3.3241 1.5131 -2.4715 27 6 3.9559 0.7489 -1.3037 28 8 2.0076 -0.6763 -1.1655 29 1 -0.3633 -1.0278 0.0022 30 1 -0.3634 0.5157 0.8889 31 1 -0.3633 0.5119 -0.8911 32 1 1.8022 -0.1401 2.1378 33 1 1.5764 -1.7081 1.3206 34 1 3.1854 0.9860 3.1661 35 1 3.0734 -0.6473 3.8649 36 1 5.7184 0.9072 3.8860 37 1 4.4885 -1.4881 5.4317 38 1 6.2307 -1.2212 4.9905 39 1 6.4080 0.7108 6.4881 40 1 5.0456 -0.1014 7.3742 41 1 4.6365 2.1935 5.6694 42 1 3.3653 0.9179 5.9100 43 1 3.7776 -2.5009 -0.1748 44 1 5.1255 -1.3356 -0.1242 45 1 3.4632 -2.4157 -2.5810 46 1 4.9056 -1.3796 -2.7048 47 1 3.5424 -1.0780 -4.7158 48 1 2.1019 -0.7301 -3.7254 49 1 2.6622 -0.1467 -7.1994 50 1 2.2498 1.6036 -2.3104 51 1 3.7697 2.5053 -2.5427 52 1 3.6943 1.2378 -0.3653 53 1 5.0397 0.7393 -1.4195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098580524.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:05 Heat of formation + Delta-G solvation = -56.655570 kcal Electronic energy + Delta-G solvation = -31442.083361 eV Core-core repulsion = 27507.120384 eV Total energy + Delta-G solvation = -3934.962977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.91553 -40.44238 -39.04601 -37.94636 -35.74410 -35.09542 -33.35669 -31.82331 -31.69410 -31.05041 -28.56790 -27.25976 -26.43470 -26.05242 -24.43894 -24.02859 -23.03705 -22.13739 -20.56570 -20.30554 -19.94504 -18.88164 -18.12658 -17.41803 -16.99407 -16.84762 -16.75789 -16.22756 -15.97839 -15.77740 -15.37376 -15.23731 -14.99603 -14.94571 -14.77629 -14.70068 -13.91401 -13.71797 -13.35558 -13.28534 -13.25819 -13.22396 -13.04947 -12.93314 -12.82126 -12.69001 -12.60467 -12.57739 -12.31784 -12.25181 -12.09211 -11.85926 -11.74037 -11.50393 -11.40000 -11.28946 -11.19720 -11.04257 -10.77886 -10.66551 -10.53094 -9.49497 -8.68371 -7.87848 -5.33146 1.45064 1.47926 1.54753 1.62033 1.88776 2.49987 2.71871 3.25961 3.42399 3.58569 3.69833 3.75889 3.76914 3.81359 3.88393 3.92698 4.00675 4.04948 4.15310 4.25196 4.37000 4.38420 4.44733 4.51052 4.56823 4.62430 4.66761 4.68728 4.73533 4.77289 4.85521 4.88650 4.90022 4.93614 4.95357 5.03038 5.05235 5.10095 5.12212 5.14816 5.19435 5.26292 5.33126 5.39555 5.42716 5.44834 5.62629 5.66075 5.78095 6.37191 6.38227 6.41330 7.14019 7.15128 7.84970 8.38173 9.18280 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.002879 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.384674 B = 9723.834494 C =10381.218437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.056 0.944 4 C 0.083 3.917 5 N -0.614 5.614 6 C 0.509 3.491 7 O -0.584 6.584 8 C -0.122 4.122 9 C -0.103 4.103 10 C -0.139 4.139 11 C -0.141 4.141 12 C -0.125 4.125 13 C 0.098 3.902 14 C 0.128 3.872 15 C -0.119 4.119 16 C 0.190 3.810 17 N -0.608 5.608 18 C -0.267 4.267 19 H 0.062 0.938 20 C -0.048 4.048 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.276 1.276 26 C 0.155 3.845 27 C -0.136 4.136 28 O -0.377 6.377 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.001 0.999 49 H 0.251 0.749 50 H 0.015 0.985 51 H 0.046 0.954 52 H 0.070 0.930 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -1.852 26.207 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 H 0.074 0.926 4 C -0.039 4.039 5 N -0.347 5.347 6 C 0.300 3.700 7 O -0.464 6.464 8 C -0.162 4.162 9 C -0.122 4.122 10 C -0.177 4.177 11 C -0.178 4.178 12 C -0.162 4.162 13 C -0.026 4.026 14 C 0.088 3.912 15 C -0.158 4.158 16 C 0.065 3.935 17 N -0.331 5.331 18 C -0.397 4.397 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.201 1.201 26 C 0.029 3.971 27 C -0.176 4.176 28 O -0.297 6.297 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.019 0.981 49 H 0.060 0.940 50 H 0.033 0.967 51 H 0.064 0.936 52 H 0.088 0.912 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.659 -2.052 25.876 26.214 hybrid contribution 0.913 0.240 -1.466 1.744 sum -2.746 -1.813 24.410 24.630 Atomic orbital electron populations 1.21716 0.90707 1.03521 1.03379 1.22715 0.96704 0.95565 0.85004 0.92589 1.22713 0.78229 1.03092 0.99893 1.48302 1.08082 1.62640 1.15658 1.21520 0.86185 0.76775 0.85552 1.90673 1.17035 1.56718 1.81976 1.21815 0.99710 1.03374 0.91259 1.22328 0.97320 0.98485 0.94105 1.22995 1.01311 0.96710 0.96660 1.22792 0.99785 0.97426 0.97846 1.22961 1.00284 0.99122 0.93855 1.22127 0.99593 0.97516 0.83368 1.21455 0.81318 0.94366 0.94055 1.22011 1.00423 0.99201 0.94160 1.20388 0.94657 0.83266 0.95218 1.44271 1.71139 1.06855 1.10866 1.19447 1.19696 1.14917 0.85684 0.91983 1.25779 0.97995 1.00972 0.99624 1.70190 1.26956 1.39942 1.20657 0.85357 0.78712 0.78005 0.78462 1.20570 1.21744 1.20124 1.20811 0.96288 0.93929 0.86081 1.22311 1.00069 0.96556 0.98626 1.88046 1.20185 1.76982 1.44446 0.91278 0.87594 0.93451 0.85244 0.89204 0.86574 0.85990 0.91210 0.89102 0.93711 0.90866 0.90142 0.91163 0.87919 0.90259 0.90239 0.90648 0.91600 0.92871 0.98123 0.94016 0.96691 0.93564 0.91156 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.57 71.98 0.69 -1.77 16 2 C 0.06 1.35 3.02 30.69 0.09 1.44 16 3 H 0.06 1.40 6.29 -2.39 -0.02 1.38 16 4 C 0.08 1.38 5.83 86.35 0.50 1.89 16 5 N -0.61 -14.54 2.52 -817.39 -2.06 -16.60 16 6 C 0.51 12.46 7.71 87.66 0.68 13.14 16 7 O -0.58 -19.72 15.23 -3.02 -0.05 -19.77 16 8 C -0.12 -1.76 3.91 29.85 0.12 -1.65 16 9 C -0.10 -1.73 3.15 -10.26 -0.03 -1.76 16 10 C -0.14 -2.24 7.63 31.12 0.24 -2.01 16 11 C -0.14 -1.77 8.08 31.12 0.25 -1.52 16 12 C -0.12 -1.38 7.64 31.12 0.24 -1.14 16 13 C 0.10 2.87 5.29 86.34 0.46 3.33 16 14 C 0.13 4.40 0.68 -10.72 -0.01 4.39 16 15 C -0.12 -4.70 5.10 30.66 0.16 -4.55 16 16 C 0.19 9.62 5.08 86.36 0.44 10.06 16 17 N -0.61 -32.01 2.99 -699.10 -2.09 -34.11 16 18 C -0.27 -15.30 9.59 84.03 0.81 -14.49 16 19 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 21 N -0.93 -56.41 11.19 21.65 0.24 -56.17 16 22 Si 0.97 46.01 29.59 68.60 2.03 48.04 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.15 6.83 6.28 86.36 0.54 7.37 16 27 C -0.14 -5.00 4.33 30.65 0.13 -4.87 16 28 O -0.38 -12.53 8.65 -148.98 -1.29 -13.82 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.13 1.14 6.05 -2.39 -0.01 1.12 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.12 1.20 7.66 -2.39 -0.02 1.18 16 35 H 0.12 1.08 7.72 -2.39 -0.02 1.06 16 36 H 0.07 1.59 7.67 -2.39 -0.02 1.57 16 37 H 0.09 1.19 7.89 -2.39 -0.02 1.17 16 38 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.10 0.72 8.10 -2.39 -0.02 0.70 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.65 7.07 -2.39 -0.02 2.64 16 45 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.05 3.02 6.03 -2.39 -0.01 3.00 16 48 H 0.00 0.04 7.83 -2.39 -0.02 0.02 16 49 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 50 H 0.02 0.68 7.83 -2.39 -0.02 0.66 16 51 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 52 H 0.07 2.28 6.15 -2.39 -0.01 2.26 16 53 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -73.93 397.41 3.37 -70.56 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.87 Total: 16.34 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.71 Total: 5.53 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.91 Total: -106.88 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.33 Total: -33.59 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -73.93 3.37 -70.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098580524.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.906 kcal (2) G-P(sol) polarization free energy of solvation -73.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds