Wall clock time and date at job start Tue Mar 31 2020 21:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.51170 * 2 1 4 4 C 1.53298 * 109.51033 * 239.85731 * 2 1 3 5 5 N 1.47153 * 108.38338 * 187.74211 * 4 2 1 6 6 C 1.34773 * 120.98827 * 230.60063 * 5 4 2 7 7 O 1.21284 * 119.99805 * 179.97438 * 6 5 4 8 8 C 1.50694 * 119.99930 * 359.97438 * 6 5 4 9 9 C 1.53001 * 109.47181 * 179.97438 * 8 6 5 10 10 C 1.53777 * 113.61617 * 274.14078 * 9 8 6 11 11 C 1.53956 * 87.02346 * 220.04464 * 10 9 8 12 12 C 1.53779 * 113.61948 * 176.52907 * 9 8 6 13 13 C 1.47156 * 118.02027 * 50.58047 * 5 4 2 14 14 C 1.53251 * 108.40022 * 309.51010 * 13 5 4 15 15 C 1.52992 * 109.37822 * 172.13781 * 14 13 5 16 16 C 1.53196 * 109.34609 * 181.16038 * 15 14 13 17 17 N 1.46934 * 108.76567 * 305.41906 * 16 15 14 18 18 C 1.36943 * 120.63701 * 233.64821 * 17 16 15 19 19 H 1.07992 * 119.99565 * 152.30520 * 18 17 16 20 20 C 1.38813 * 119.99948 * 332.30714 * 18 17 16 21 21 N 1.31622 * 120.00063 * 342.59642 * 20 18 17 22 22 Si 1.86798 * 119.99752 * 162.58856 * 20 18 17 23 23 H 1.48502 * 109.46821 * 94.35085 * 22 20 18 24 24 H 1.48503 * 109.47237 * 214.35149 * 22 20 18 25 25 H 1.48503 * 109.47259 * 334.35362 * 22 20 18 26 26 C 1.46921 * 118.72371 * 53.67754 * 17 16 15 27 27 C 1.52982 * 109.38932 * 292.22997 * 14 13 5 28 28 O 1.42904 * 109.31963 * 52.19136 * 14 13 5 29 29 H 1.08997 * 109.46940 * 299.89769 * 1 2 3 30 30 H 1.08996 * 109.47100 * 179.89702 * 1 2 3 31 31 H 1.09005 * 109.46847 * 59.90210 * 1 2 3 32 32 H 1.09001 * 109.68179 * 307.46197 * 4 2 1 33 33 H 1.09000 * 109.67966 * 68.01964 * 4 2 1 34 34 H 1.09001 * 109.47588 * 300.00032 * 8 6 5 35 35 H 1.08999 * 109.47290 * 60.00309 * 8 6 5 36 36 H 1.09005 * 112.84803 * 45.33802 * 9 8 6 37 37 H 1.09000 * 113.61400 * 334.56332 * 10 9 8 38 38 H 1.09001 * 113.62123 * 105.46838 * 10 9 8 39 39 H 1.09001 * 113.53796 * 270.81304 * 11 10 9 40 40 H 1.08996 * 113.74668 * 139.94000 * 11 10 9 41 41 H 1.08996 * 113.61722 * 254.53662 * 12 9 8 42 42 H 1.09010 * 113.61054 * 25.43428 * 12 9 8 43 43 H 1.09001 * 109.67802 * 189.78300 * 13 5 4 44 44 H 1.09002 * 109.71338 * 69.25866 * 13 5 4 45 45 H 1.08999 * 109.48716 * 301.11594 * 15 14 13 46 46 H 1.08997 * 109.48990 * 61.19428 * 15 14 13 47 47 H 1.08997 * 109.58478 * 185.63354 * 16 15 14 48 48 H 1.08995 * 109.70545 * 65.27849 * 16 15 14 49 49 H 0.96995 * 119.99379 * 180.02562 * 21 20 18 50 50 H 1.08991 * 109.58706 * 186.54140 * 26 17 16 51 51 H 1.09006 * 109.70548 * 66.18191 * 26 17 16 52 52 H 1.08996 * 109.49370 * 298.82123 * 27 14 13 53 53 H 1.09008 * 109.49394 * 58.87134 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7256 -1.2496 5 7 3.5013 -0.8759 -1.1338 6 6 4.3192 -0.5024 -2.1377 7 8 5.5194 -0.6339 -2.0229 8 6 3.7424 0.0785 -3.4029 9 6 4.8768 0.4162 -4.3725 10 6 5.4894 1.8079 -4.1431 11 6 5.5503 1.9453 -5.6753 12 6 4.3887 0.9392 -5.7337 13 6 4.0409 -1.4456 0.1111 14 6 3.4307 -0.6871 1.2947 15 6 3.8212 -1.3837 2.5997 16 6 3.1869 -0.6417 3.7804 17 7 3.5740 0.7741 3.7120 18 6 4.1569 1.3909 4.7867 19 1 4.8241 2.2261 4.6334 20 6 3.8901 0.9426 6.0731 21 7 2.8442 0.1762 6.2992 22 14 5.0156 1.4269 7.4831 23 1 4.4730 2.6336 8.1574 24 1 5.0968 0.3096 8.4578 25 1 6.3716 1.7227 6.9549 26 6 3.3231 1.5154 2.4685 27 6 3.9555 0.7498 1.3020 28 8 2.0075 -0.6759 1.1659 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 -1.0276 -0.0018 31 1 -0.3633 0.5154 -0.8892 32 1 1.5762 -1.7085 -1.3200 33 1 1.8025 -0.1407 -2.1376 34 1 3.0737 -0.6480 -3.8645 35 1 3.1858 0.9851 -3.1657 36 1 5.6177 -0.3795 -4.4507 37 1 4.8067 2.5126 -3.6684 38 1 6.4696 1.7806 -3.6670 39 1 6.4763 1.5686 -6.1097 40 1 5.2862 2.9387 -6.0377 41 1 4.4813 0.2115 -6.5399 42 1 3.4043 1.4060 -5.6946 43 1 5.1254 -1.3364 0.1249 44 1 3.7777 -2.5014 0.1766 45 1 3.4642 -2.4134 2.5831 46 1 4.9060 -1.3760 2.7055 47 1 3.5423 -1.0729 4.7163 48 1 2.1016 -0.7268 3.7278 49 1 2.6577 -0.1367 7.1982 50 1 3.7682 2.5077 2.5386 51 1 2.2491 1.6072 2.3057 52 1 5.0393 0.7406 1.4180 53 1 3.6945 1.2372 0.3625 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098580525.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:09 Heat of formation + Delta-G solvation = -56.780359 kcal Electronic energy + Delta-G solvation = -31547.957763 eV Core-core repulsion = 27612.989375 eV Total energy + Delta-G solvation = -3934.968388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.91568 -40.43813 -39.03546 -37.94534 -35.74244 -35.09604 -33.35741 -31.82353 -31.69474 -31.04925 -28.56899 -27.25937 -26.43956 -26.05298 -24.44130 -24.02904 -23.03804 -22.14117 -20.57267 -20.28238 -19.96548 -18.88690 -18.12472 -17.39360 -16.99605 -16.95724 -16.57572 -16.28577 -15.99393 -15.79393 -15.42490 -15.22654 -15.00599 -14.92251 -14.80161 -14.64189 -13.89084 -13.72756 -13.36430 -13.28048 -13.26854 -13.21506 -13.05861 -12.97556 -12.81987 -12.69826 -12.61384 -12.55950 -12.31616 -12.22986 -12.08755 -11.86074 -11.74153 -11.49286 -11.40368 -11.30271 -11.18579 -11.05014 -10.77915 -10.66679 -10.53728 -9.49403 -8.68450 -7.88278 -5.33422 1.44559 1.46366 1.56735 1.62141 1.88968 2.49775 2.71863 3.25853 3.42343 3.58349 3.69675 3.75758 3.76698 3.81715 3.88039 3.92477 4.00067 4.06787 4.14454 4.25193 4.36968 4.37278 4.44714 4.48718 4.59296 4.62649 4.67419 4.69929 4.71004 4.77491 4.85338 4.88547 4.90000 4.93560 4.95257 5.02516 5.05236 5.10018 5.12285 5.14665 5.19219 5.26137 5.33267 5.39644 5.42193 5.44687 5.62682 5.65700 5.78185 6.37162 6.38253 6.41161 7.13830 7.15288 7.84730 8.37844 9.18083 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016862 B = 0.003040 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.117288 B = 9207.011821 C = 9966.547045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.056 0.944 4 C 0.083 3.917 5 N -0.614 5.614 6 C 0.509 3.491 7 O -0.584 6.584 8 C -0.123 4.123 9 C -0.100 4.100 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.122 4.122 13 C 0.097 3.903 14 C 0.129 3.871 15 C -0.119 4.119 16 C 0.191 3.809 17 N -0.608 5.608 18 C -0.266 4.266 19 H 0.062 0.938 20 C -0.048 4.048 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.272 1.272 26 C 0.154 3.846 27 C -0.136 4.136 28 O -0.377 6.377 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.000 1.000 49 H 0.251 0.749 50 H 0.046 0.954 51 H 0.015 0.985 52 H 0.052 0.948 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 -1.024 -25.860 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 H 0.074 0.926 4 C -0.039 4.039 5 N -0.347 5.347 6 C 0.300 3.700 7 O -0.464 6.464 8 C -0.162 4.162 9 C -0.119 4.119 10 C -0.182 4.182 11 C -0.178 4.178 12 C -0.159 4.159 13 C -0.026 4.026 14 C 0.088 3.912 15 C -0.158 4.158 16 C 0.065 3.935 17 N -0.332 5.332 18 C -0.397 4.397 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.197 1.197 26 C 0.029 3.971 27 C -0.175 4.175 28 O -0.297 6.297 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.019 0.981 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.033 0.967 52 H 0.071 0.929 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.512 -1.230 -25.536 25.806 hybrid contribution 0.885 0.244 1.492 1.751 sum -2.628 -0.986 -24.045 24.208 Atomic orbital electron populations 1.21717 0.90720 1.03525 1.03373 1.22716 0.96699 0.95559 0.85009 0.92605 1.22712 0.78243 1.03099 0.99875 1.48301 1.08076 1.62643 1.15666 1.21517 0.86187 0.76695 0.85633 1.90675 1.17009 1.56714 1.81971 1.21813 0.99765 1.03495 0.91126 1.22312 0.96862 0.97083 0.95618 1.23033 1.00610 0.97207 0.97347 1.22828 0.99311 1.00433 0.95271 1.22938 0.99092 0.98384 0.95516 1.22125 0.99604 0.97533 0.83362 1.21455 0.81304 0.94356 0.94060 1.22011 1.00438 0.99211 0.94140 1.20379 0.94650 0.83235 0.95223 1.44285 1.71192 1.06858 1.10820 1.19480 1.19672 1.14824 0.85675 0.91988 1.25780 0.98023 1.00958 0.99632 1.70201 1.26996 1.40031 1.20537 0.85286 0.79077 0.77095 0.79124 1.21134 1.21592 1.19677 1.20808 0.96280 0.93944 0.86096 1.22307 1.00047 0.96553 0.98598 1.88052 1.20200 1.77005 1.44426 0.93460 0.91273 0.87597 0.89182 0.85253 0.85891 0.86675 0.90737 0.89742 0.93927 0.90639 0.90412 0.90641 0.88118 0.90233 0.90229 0.90631 0.91563 0.92902 0.98145 0.94026 0.93593 0.96712 0.92931 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.57 71.98 0.69 -1.78 16 2 C 0.06 1.35 3.01 30.70 0.09 1.44 16 3 H 0.06 1.40 6.29 -2.39 -0.02 1.38 16 4 C 0.08 1.38 5.83 86.35 0.50 1.89 16 5 N -0.61 -14.53 2.52 -817.42 -2.06 -16.59 16 6 C 0.51 12.43 7.71 87.66 0.68 13.11 16 7 O -0.58 -19.66 15.26 -3.04 -0.05 -19.70 16 8 C -0.12 -1.76 3.90 29.85 0.12 -1.65 16 9 C -0.10 -1.65 3.11 -10.27 -0.03 -1.68 16 10 C -0.14 -2.60 7.65 31.18 0.24 -2.36 16 11 C -0.14 -1.88 8.09 31.18 0.25 -1.63 16 12 C -0.12 -1.31 7.65 31.12 0.24 -1.07 16 13 C 0.10 2.87 5.29 86.34 0.46 3.32 16 14 C 0.13 4.40 0.68 -10.72 -0.01 4.40 16 15 C -0.12 -4.70 5.10 30.66 0.16 -4.55 16 16 C 0.19 9.64 5.08 86.36 0.44 10.08 16 17 N -0.61 -32.04 2.99 -699.08 -2.09 -34.14 16 18 C -0.27 -15.25 9.59 84.03 0.81 -14.45 16 19 H 0.06 3.49 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 21 N -0.93 -56.42 11.19 21.65 0.24 -56.17 16 22 Si 0.97 46.00 29.59 68.60 2.03 48.03 16 23 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 C 0.15 6.83 6.28 86.37 0.54 7.37 16 27 C -0.14 -4.98 4.32 30.65 0.13 -4.85 16 28 O -0.38 -12.54 8.65 -148.98 -1.29 -13.83 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 1.14 6.05 -2.39 -0.01 1.12 16 34 H 0.12 1.07 8.02 -2.39 -0.02 1.05 16 35 H 0.12 1.19 7.39 -2.39 -0.02 1.18 16 36 H 0.07 1.60 7.73 -2.38 -0.02 1.58 16 37 H 0.08 1.38 7.92 -2.39 -0.02 1.36 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.72 8.10 -2.38 -0.02 0.71 16 43 H 0.08 2.65 7.07 -2.39 -0.02 2.63 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.05 3.00 6.04 -2.39 -0.01 2.98 16 48 H 0.00 0.02 7.83 -2.39 -0.02 0.00 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.05 2.01 7.93 -2.39 -0.02 2.00 16 51 H 0.01 0.67 7.83 -2.38 -0.02 0.66 16 52 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.07 2.28 6.15 -2.38 -0.01 2.26 16 Total: -1.00 -74.00 397.53 3.37 -70.63 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.87 Total: 16.53 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.72 Total: 5.24 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.91 Total: -106.90 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.34 Total: -33.54 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -74.00 3.37 -70.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098580525.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.853 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds