Wall clock time and date at job start Tue Mar 31 2020 21:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47552 * 2 1 4 4 C 1.50703 * 109.47198 * 239.99357 * 2 1 3 5 5 O 1.21274 * 120.00185 * 263.78869 * 4 2 1 6 6 N 1.34774 * 119.99442 * 83.79290 * 4 2 1 7 7 C 1.47158 * 120.99312 * 5.04501 * 6 4 2 8 8 C 1.53295 * 108.37110 * 129.42538 * 7 6 4 9 9 H 1.09004 * 109.50981 * 292.42792 * 8 7 6 10 10 C 1.52997 * 109.51192 * 172.28173 * 8 7 6 11 11 O 1.42967 * 109.23372 * 52.35115 * 8 7 6 12 12 C 1.42899 * 114.21072 * 297.51657 * 11 8 7 13 13 C 1.52994 * 109.54301 * 182.20585 * 12 11 8 14 14 C 1.53191 * 109.35030 * 59.05620 * 13 12 11 15 15 N 1.46932 * 108.76961 * 54.58575 * 14 13 12 16 16 C 1.36931 * 120.64128 * 126.31252 * 15 14 13 17 17 H 1.08007 * 120.00055 * 211.65639 * 16 15 14 18 18 C 1.38810 * 120.00466 * 31.94036 * 16 15 14 19 19 N 1.31628 * 119.99922 * 9.96874 * 18 16 15 20 20 Si 1.86802 * 120.00574 * 189.97223 * 18 16 15 21 21 H 1.48499 * 109.46675 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46957 * 119.99349 * 20 18 16 23 23 H 1.48498 * 109.47185 * 239.99888 * 20 18 16 24 24 C 1.46925 * 118.70906 * 306.59161 * 15 14 13 25 25 C 1.52727 * 109.03375 * 53.34671 * 24 15 14 26 26 C 1.47157 * 120.98900 * 185.07802 * 6 4 2 27 27 C 1.53002 * 109.47201 * 119.99939 * 2 1 3 28 28 C 1.53002 * 117.49965 * 248.62510 * 27 2 1 29 29 C 1.52995 * 117.50265 * 179.97438 * 27 2 1 30 30 H 1.09001 * 109.47149 * 64.93869 * 1 2 3 31 31 H 1.08998 * 109.47352 * 184.94677 * 1 2 3 32 32 H 1.09001 * 109.47397 * 304.94622 * 1 2 3 33 33 H 1.09003 * 109.68055 * 9.70965 * 7 6 4 34 34 H 1.08997 * 109.68769 * 249.14784 * 7 6 4 35 35 H 1.08995 * 109.46821 * 300.24198 * 10 8 7 36 36 H 1.09000 * 109.47479 * 60.24194 * 10 8 7 37 37 H 1.09000 * 109.47472 * 180.24252 * 10 8 7 38 38 H 1.09000 * 109.49417 * 299.09191 * 13 12 11 39 39 H 1.08993 * 109.49239 * 179.01774 * 13 12 11 40 40 H 1.09003 * 109.58499 * 294.79953 * 14 13 12 41 41 H 1.09005 * 109.58745 * 174.37777 * 14 13 12 42 42 H 0.96998 * 120.00431 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.58826 * 173.19371 * 24 15 14 44 44 H 1.09005 * 109.58445 * 293.60783 * 24 15 14 45 45 H 1.09001 * 109.56378 * 185.61952 * 25 24 15 46 46 H 1.08999 * 109.35746 * 65.61230 * 25 24 15 47 47 H 1.08995 * 109.67913 * 110.72630 * 26 6 4 48 48 H 1.09007 * 109.67111 * 350.18178 * 26 6 4 49 49 H 1.09005 * 115.55099 * 34.32273 * 27 2 1 50 50 H 1.08997 * 117.49942 * 359.97438 * 28 27 2 51 51 H 1.09002 * 117.50092 * 145.02124 * 28 27 2 52 52 H 1.09004 * 117.50296 * 214.97384 * 29 27 2 53 53 H 1.09003 * 117.49881 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.3416 -1.8817 -1.1706 6 7 2.1379 -0.0444 -2.3972 7 6 1.8744 1.4015 -2.4708 8 6 3.0545 2.0720 -3.1834 9 1 3.9441 2.0041 -2.5572 10 6 2.7243 3.5426 -3.4460 11 8 3.2937 1.4070 -4.4262 12 6 3.6661 0.0337 -4.2939 13 6 3.9483 -0.5556 -5.6773 14 6 5.0751 0.2376 -6.3466 15 7 6.2383 0.2557 -5.4490 16 6 7.4676 -0.1544 -5.8914 17 1 8.1595 -0.6222 -5.2066 18 6 7.8269 0.0365 -7.2185 19 7 7.0766 0.7809 -8.0030 20 14 9.3753 -0.7632 -7.8913 21 1 10.0374 -1.5429 -6.8149 22 1 9.0173 -1.6700 -9.0115 23 1 10.3021 0.2881 -8.3822 24 6 6.0554 0.7166 -4.0660 25 6 4.9190 -0.0758 -3.4231 26 6 2.5194 -0.7415 -3.6358 27 6 2.0400 -0.7212 1.2493 28 6 2.7418 0.1227 2.3152 29 6 3.5549 -0.8286 1.4341 30 1 -0.3633 0.4353 -0.9309 31 1 -0.3634 -1.0238 0.0886 32 1 -0.3634 0.5887 0.8424 33 1 1.7742 1.8081 -1.4644 34 1 0.9573 1.5796 -3.0323 35 1 1.8334 3.6090 -4.0705 36 1 2.5421 4.0490 -2.4981 37 1 3.5620 4.0177 -3.9565 38 1 3.0481 -0.4953 -6.2889 39 1 4.2491 -1.5981 -5.5740 40 1 4.7420 1.2584 -6.5339 41 1 5.3476 -0.2386 -7.2885 42 1 7.3274 0.9140 -8.9305 43 1 6.9748 0.5565 -3.5028 44 1 5.8037 1.7772 -4.0645 45 1 4.7092 0.3259 -2.4318 46 1 5.2118 -1.1222 -3.3369 47 1 1.6662 -0.7800 -4.3130 48 1 2.8483 -1.7538 -3.4007 49 1 1.4309 -1.5585 1.5904 50 1 2.8406 1.1916 2.1263 51 1 2.5946 -0.1593 3.3578 52 1 3.9424 -1.7361 1.8973 53 1 4.1884 -0.3851 0.6658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098580884.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:05 Heat of formation + Delta-G solvation = -47.970362 kcal Electronic energy + Delta-G solvation = -32011.614050 eV Core-core repulsion = 28077.027692 eV Total energy + Delta-G solvation = -3934.586358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.00117 -40.40664 -38.15304 -37.84420 -35.80180 -35.10454 -33.48613 -33.08640 -31.71626 -31.21666 -28.76584 -27.31879 -26.30591 -25.16761 -24.21574 -23.30552 -23.17875 -22.49603 -21.65002 -20.48447 -19.77164 -18.88911 -18.36631 -17.39264 -17.01709 -16.98369 -16.43387 -16.26661 -15.87293 -15.77262 -15.47276 -15.22868 -15.01911 -14.95323 -14.87860 -14.53397 -13.92392 -13.53222 -13.42116 -13.34087 -13.23673 -13.11677 -13.00907 -12.93354 -12.83425 -12.70832 -12.66786 -12.57395 -12.40059 -12.23426 -12.05160 -11.92734 -11.87172 -11.74544 -11.43099 -11.36297 -11.23399 -11.06474 -10.78084 -10.57351 -10.47966 -9.49950 -8.62207 -7.87227 -5.39241 1.44739 1.45735 1.56736 1.59648 1.82617 2.48885 2.70014 2.87696 3.27731 3.50462 3.55852 3.63274 3.68271 3.78611 3.88580 3.90710 3.94808 4.02386 4.15923 4.17595 4.24650 4.36344 4.36966 4.43271 4.49563 4.56316 4.61027 4.67475 4.69473 4.75215 4.79786 4.84740 4.88135 4.88681 4.94820 4.95912 5.04201 5.04775 5.09342 5.13725 5.19225 5.24497 5.25823 5.32300 5.35133 5.38877 5.46227 5.62545 5.80254 6.35743 6.39486 6.40639 7.13891 7.15426 7.83995 8.38767 9.18538 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.003307 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.355866 B = 8465.864718 C = 9050.032387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 H 0.115 0.885 4 C 0.515 3.485 5 O -0.577 6.577 6 N -0.612 5.612 7 C 0.081 3.919 8 C 0.059 3.941 9 H 0.053 0.947 10 C -0.136 4.136 11 O -0.376 6.376 12 C 0.129 3.871 13 C -0.119 4.119 14 C 0.192 3.808 15 N -0.608 5.608 16 C -0.267 4.267 17 H 0.060 0.940 18 C -0.046 4.046 19 N -0.932 5.932 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.289 1.289 24 C 0.155 3.845 25 C -0.135 4.135 26 C 0.097 3.903 27 C -0.141 4.141 28 C -0.150 4.150 29 C -0.193 4.193 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.000 1.000 41 H 0.053 0.947 42 H 0.251 0.749 43 H 0.044 0.956 44 H 0.014 0.986 45 H 0.067 0.933 46 H 0.051 0.949 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.103 0.897 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.087 0.913 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.870 4.181 18.856 25.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.133 0.867 4 C 0.305 3.695 5 O -0.456 6.456 6 N -0.345 5.345 7 C -0.041 4.041 8 C 0.001 3.999 9 H 0.071 0.929 10 C -0.193 4.193 11 O -0.296 6.296 12 C 0.089 3.911 13 C -0.159 4.159 14 C 0.067 3.933 15 N -0.332 5.332 16 C -0.398 4.398 17 H 0.078 0.922 18 C -0.241 4.241 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.216 1.216 24 C 0.029 3.971 25 C -0.174 4.174 26 C -0.026 4.026 27 C -0.160 4.160 28 C -0.187 4.187 29 C -0.230 4.230 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.121 0.879 50 H 0.129 0.871 51 H 0.128 0.872 52 H 0.106 0.894 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.693 3.692 18.564 25.237 hybrid contribution 1.353 -0.756 -0.835 1.760 sum -15.340 2.936 17.729 23.628 Atomic orbital electron populations 1.21702 0.90342 1.02930 1.04096 1.21021 0.99103 1.00054 0.89379 0.86724 1.21355 0.76483 0.86918 0.84704 1.90668 1.50907 1.18711 1.85299 1.48266 1.68351 1.10035 1.07834 1.22763 0.98877 0.78422 1.04027 1.22700 0.96751 0.94246 0.86210 0.92888 1.21714 1.02364 0.91334 1.03918 1.88050 1.88640 1.22849 1.30019 1.21450 0.91930 0.82304 0.95442 1.22031 0.99844 0.99316 0.94690 1.20376 0.84650 0.95417 0.92865 1.44214 1.05509 1.75331 1.08117 1.19502 0.93530 1.31933 0.94796 0.92190 1.25920 1.00958 0.98888 0.98370 1.70159 1.40575 1.40875 1.06197 0.85180 0.79380 0.77646 0.78068 1.19340 1.21408 1.21608 1.20716 0.95683 0.94866 0.85814 1.22211 0.96380 1.00546 0.98268 1.22153 0.97609 0.96907 0.85948 1.22038 0.95008 1.02242 0.96714 1.23177 1.01398 0.97777 0.96361 1.22826 0.94158 1.02408 1.03617 0.91284 0.93071 0.88612 0.85717 0.88882 0.91089 0.87688 0.93388 0.90578 0.91621 0.98155 0.92838 0.94009 0.93698 0.96811 0.91474 0.93014 0.89955 0.90197 0.87863 0.87141 0.87212 0.89419 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.16 71.98 0.66 -0.91 16 2 C -0.07 -1.21 2.16 -11.54 -0.02 -1.24 16 3 H 0.12 1.32 5.85 -2.39 -0.01 1.31 16 4 C 0.52 13.04 6.53 87.66 0.57 13.62 16 5 O -0.58 -19.79 15.47 -3.01 -0.05 -19.83 16 6 N -0.61 -14.85 2.52 -817.40 -2.06 -16.91 16 7 C 0.08 1.43 5.73 86.35 0.49 1.92 16 8 C 0.06 1.41 3.02 30.69 0.09 1.50 16 9 H 0.05 1.39 6.29 -2.38 -0.01 1.37 16 10 C -0.14 -2.53 9.57 71.98 0.69 -1.84 16 11 O -0.38 -12.65 8.65 -148.98 -1.29 -13.94 16 12 C 0.13 4.47 0.68 -10.72 -0.01 4.46 16 13 C -0.12 -4.75 5.10 30.66 0.16 -4.60 16 14 C 0.19 9.77 5.02 86.36 0.43 10.20 16 15 N -0.61 -32.24 2.99 -699.95 -2.09 -34.33 16 16 C -0.27 -15.36 9.58 84.03 0.80 -14.55 16 17 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 18 C -0.05 -2.62 5.06 84.86 0.43 -2.19 16 19 N -0.93 -56.34 11.05 21.65 0.24 -56.10 16 20 Si 0.97 46.02 29.57 68.60 2.03 48.05 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 C 0.15 6.95 6.26 86.21 0.54 7.49 16 25 C -0.13 -5.04 4.31 30.49 0.13 -4.91 16 26 C 0.10 2.88 5.31 86.34 0.46 3.34 16 27 C -0.14 -2.48 4.60 -10.79 -0.05 -2.53 16 28 C -0.15 -1.97 10.18 30.61 0.31 -1.66 16 29 C -0.19 -3.93 9.63 30.61 0.29 -3.63 16 30 H 0.07 0.72 8.07 -2.39 -0.02 0.71 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 1.31 5.49 -2.39 -0.01 1.30 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.00 0.02 7.82 -2.39 -0.02 0.00 16 41 H 0.05 3.05 6.12 -2.38 -0.01 3.03 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.04 2.00 7.93 -2.38 -0.02 1.98 16 44 H 0.01 0.64 7.83 -2.38 -0.02 0.62 16 45 H 0.07 2.26 6.16 -2.39 -0.01 2.24 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.08 2.68 7.06 -2.38 -0.02 2.66 16 49 H 0.10 1.91 8.11 -2.38 -0.02 1.89 16 50 H 0.11 1.10 8.05 -2.39 -0.02 1.08 16 51 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 53 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -73.60 400.22 3.63 -69.96 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.87 Total: 18.63 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.98 Total: 4.47 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.92 Total: -107.35 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.34 Total: -33.77 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.60 3.63 -69.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098580884.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds