Wall clock time and date at job start Tue Mar 31 2020 21:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47361 * 2 1 4 4 C 1.50705 * 109.47389 * 119.99640 * 2 1 3 5 5 O 1.21281 * 119.99584 * 104.09717 * 4 2 1 6 6 N 1.34774 * 119.99837 * 284.10840 * 4 2 1 7 7 C 1.47153 * 120.98799 * 185.85967 * 6 4 2 8 8 C 1.53291 * 108.37525 * 129.41561 * 7 6 4 9 9 H 1.08994 * 109.51591 * 292.42437 * 8 7 6 10 10 C 1.53007 * 109.51141 * 172.27590 * 8 7 6 11 11 O 1.42974 * 109.23136 * 52.35298 * 8 7 6 12 12 C 1.42897 * 114.20819 * 297.51370 * 11 8 7 13 13 C 1.52986 * 109.54476 * 182.20563 * 12 11 8 14 14 C 1.53194 * 109.35006 * 59.05686 * 13 12 11 15 15 N 1.46932 * 108.76911 * 54.58458 * 14 13 12 16 16 C 1.36936 * 120.64391 * 126.31741 * 15 14 13 17 17 H 1.07998 * 119.99761 * 209.42453 * 16 15 14 18 18 C 1.38810 * 120.00005 * 29.69614 * 16 15 14 19 19 N 1.31617 * 120.00008 * 9.91220 * 18 16 15 20 20 Si 1.86799 * 119.99994 * 189.90893 * 18 16 15 21 21 H 1.48504 * 109.47103 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46957 * 120.00163 * 20 18 16 23 23 H 1.48497 * 109.47300 * 240.00422 * 20 18 16 24 24 C 1.46930 * 118.70956 * 306.59057 * 15 14 13 25 25 C 1.52731 * 109.03261 * 53.35190 * 24 15 14 26 26 C 1.47156 * 120.99259 * 5.87625 * 6 4 2 27 27 C 1.53002 * 109.47291 * 239.99780 * 2 1 3 28 28 C 1.52997 * 117.50238 * 128.74631 * 27 2 1 29 29 C 1.52997 * 117.49840 * 60.08645 * 27 2 1 30 30 H 1.09002 * 109.47357 * 304.72311 * 1 2 3 31 31 H 1.08997 * 109.47070 * 64.71970 * 1 2 3 32 32 H 1.08997 * 109.47290 * 184.71834 * 1 2 3 33 33 H 1.09010 * 109.68432 * 9.69510 * 7 6 4 34 34 H 1.09001 * 109.71705 * 249.16139 * 7 6 4 35 35 H 1.09002 * 109.46905 * 300.24944 * 10 8 7 36 36 H 1.08992 * 109.46786 * 60.24487 * 10 8 7 37 37 H 1.08996 * 109.47016 * 180.24957 * 10 8 7 38 38 H 1.09001 * 109.49374 * 299.09438 * 13 12 11 39 39 H 1.09006 * 109.49326 * 179.01471 * 13 12 11 40 40 H 1.09002 * 109.58491 * 294.80566 * 14 13 12 41 41 H 1.08995 * 109.59023 * 174.37421 * 14 13 12 42 42 H 0.97003 * 119.99858 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.58702 * 173.18639 * 24 15 14 44 44 H 1.09000 * 109.58953 * 293.61462 * 24 15 14 45 45 H 1.08996 * 109.56624 * 185.61826 * 25 24 15 46 46 H 1.09002 * 109.36231 * 65.60338 * 25 24 15 47 47 H 1.08998 * 109.67180 * 110.73109 * 26 6 4 48 48 H 1.09003 * 109.67490 * 350.19527 * 26 6 4 49 49 H 1.08997 * 115.54789 * 274.42002 * 27 2 1 50 50 H 1.09005 * 117.49642 * 0.02562 * 28 27 2 51 51 H 1.08998 * 117.50307 * 145.01829 * 28 27 2 52 52 H 1.09007 * 117.49845 * 214.98321 * 29 27 2 53 53 H 1.09001 * 117.50168 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.4757 -1.8358 1.1424 6 7 1.9888 -0.0950 2.4288 7 6 2.5885 -0.7149 3.6211 8 6 3.5005 0.3166 4.2950 9 1 4.3571 0.5202 3.6525 10 6 3.9867 -0.2314 5.6383 11 8 2.7669 1.5249 4.5097 12 6 2.3102 2.1540 3.3106 13 6 1.5903 3.4581 3.6591 14 6 2.5521 4.3837 4.4108 15 7 3.7661 4.5613 3.6022 16 6 4.2167 5.8151 3.2858 17 1 4.7637 5.9768 2.3688 18 6 3.9753 6.8771 4.1466 19 7 3.4902 6.6522 5.3492 20 14 4.3391 8.6252 3.5980 21 1 4.8735 8.6082 2.2125 22 1 3.0892 9.4262 3.6361 23 1 5.3434 9.2310 4.5088 24 6 4.4836 3.3675 3.1346 25 6 3.5042 2.4527 2.4020 26 6 1.3397 1.2165 2.5840 27 6 2.0400 -0.7213 -1.2492 28 6 3.0763 0.0038 -2.1101 29 6 1.6374 -0.1484 -2.6096 30 1 -0.3634 0.5854 0.8447 31 1 -0.3633 0.4388 -0.9292 32 1 -0.3634 -1.0241 0.0845 33 1 3.1741 -1.5860 3.3268 34 1 1.8026 -1.0177 4.3129 35 1 3.1290 -0.4365 6.2789 36 1 4.5458 -1.1524 5.4739 37 1 4.6315 0.5043 6.1189 38 1 0.7280 3.2404 4.2894 39 1 1.2577 3.9460 2.7429 40 1 2.8142 3.9372 5.3700 41 1 2.0765 5.3508 4.5733 42 1 3.3219 7.3943 5.9508 43 1 5.2824 3.6641 2.4548 44 1 4.9056 2.8370 3.9882 45 1 4.0030 1.5202 2.1385 46 1 3.1563 2.9479 1.4954 47 1 0.4270 1.1072 3.1697 48 1 1.0998 1.6257 1.6025 49 1 2.1253 -1.8046 -1.1646 50 1 3.3951 0.9946 -1.7863 51 1 3.8432 -0.6025 -2.5922 52 1 1.4582 -0.8549 -3.4201 53 1 1.0096 0.7426 -2.6147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098580886.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:14 Heat of formation + Delta-G solvation = -48.226435 kcal Electronic energy + Delta-G solvation = -32078.160452 eV Core-core repulsion = 28143.562990 eV Total energy + Delta-G solvation = -3934.597462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02957 -40.38141 -38.33176 -37.76184 -35.94346 -35.07188 -33.47134 -32.89793 -31.64711 -31.20253 -28.60335 -27.66174 -26.14932 -25.44208 -24.17276 -23.19991 -23.10157 -22.56005 -21.39179 -20.46394 -19.86699 -18.86725 -18.34832 -17.67814 -16.98603 -16.77503 -16.57756 -16.28145 -15.87962 -15.66882 -15.40876 -15.15691 -14.99636 -14.88417 -14.74236 -14.58316 -14.00940 -13.84695 -13.41786 -13.28260 -13.14806 -13.09337 -12.97322 -12.94107 -12.85766 -12.80112 -12.66178 -12.58956 -12.29890 -12.17031 -12.01901 -11.90439 -11.80292 -11.74413 -11.40609 -11.29734 -11.23180 -10.93023 -10.78003 -10.63356 -10.51771 -9.52699 -8.60677 -7.82190 -5.32636 1.48004 1.49666 1.52561 1.59753 1.81866 2.52555 2.70582 2.88888 3.32263 3.37549 3.57626 3.63934 3.73277 3.81370 3.88287 3.96785 3.97240 4.07405 4.13638 4.19919 4.25044 4.34710 4.39400 4.43931 4.47001 4.55118 4.60435 4.68859 4.70288 4.74758 4.78531 4.84938 4.86734 4.91461 4.93806 5.01166 5.03904 5.05094 5.10173 5.14909 5.23962 5.25347 5.28511 5.31906 5.33831 5.39521 5.54312 5.67162 5.89103 6.28519 6.39012 6.44374 7.05762 7.19804 7.89474 8.42378 9.22878 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.003807 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.438786 B = 7354.049606 C = 8680.315913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 H 0.102 0.898 4 C 0.524 3.476 5 O -0.578 6.578 6 N -0.610 5.610 7 C 0.089 3.911 8 C 0.070 3.930 9 H 0.051 0.949 10 C -0.137 4.137 11 O -0.377 6.377 12 C 0.119 3.881 13 C -0.116 4.116 14 C 0.186 3.814 15 N -0.607 5.607 16 C -0.260 4.260 17 H 0.066 0.934 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.295 1.295 24 C 0.152 3.848 25 C -0.140 4.140 26 C 0.090 3.910 27 C -0.152 4.152 28 C -0.188 4.188 29 C -0.156 4.156 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.081 0.919 40 H -0.009 1.009 41 H 0.061 0.939 42 H 0.249 0.751 43 H 0.046 0.954 44 H 0.003 0.997 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.091 0.909 48 H 0.115 0.885 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.094 0.906 52 H 0.105 0.895 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 -14.868 -10.626 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.120 0.880 4 C 0.314 3.686 5 O -0.458 6.458 6 N -0.342 5.342 7 C -0.033 4.033 8 C 0.012 3.988 9 H 0.069 0.931 10 C -0.194 4.194 11 O -0.296 6.296 12 C 0.079 3.921 13 C -0.156 4.156 14 C 0.061 3.939 15 N -0.330 5.330 16 C -0.390 4.390 17 H 0.083 0.917 18 C -0.244 4.244 19 N -0.582 5.582 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.223 1.223 24 C 0.026 3.974 25 C -0.179 4.179 26 C -0.033 4.033 27 C -0.170 4.170 28 C -0.225 4.225 29 C -0.193 4.193 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.009 0.991 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.133 0.867 49 H 0.114 0.886 50 H 0.113 0.887 51 H 0.112 0.888 52 H 0.123 0.877 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.227 -15.278 -10.382 19.835 hybrid contribution 0.749 0.931 0.221 1.215 sum -6.477 -14.348 -10.161 18.737 Atomic orbital electron populations 1.21826 0.90663 1.02887 1.04354 1.20887 0.98910 0.99746 0.90221 0.87958 1.21050 0.77072 0.85782 0.84710 1.90631 1.48588 1.20342 1.86222 1.48190 1.56936 1.20673 1.08395 1.22298 0.97803 0.96488 0.86731 1.22501 0.93323 0.84599 0.98382 0.93137 1.21689 1.01928 1.01225 0.94566 1.88058 1.72921 1.38168 1.30467 1.21685 0.93278 0.92116 0.85069 1.22029 0.98250 0.93509 1.01773 1.20471 0.85997 0.96979 0.90496 1.44252 1.26366 1.00959 1.61440 1.19555 1.32248 0.85811 1.01403 0.91673 1.25847 1.01383 1.02262 0.94909 1.70160 1.50184 1.30720 1.07159 0.85197 0.77098 0.80290 0.77804 1.19086 1.21445 1.22260 1.20715 0.93529 0.87885 0.95262 1.22281 0.97552 0.99041 0.99020 1.22666 0.95662 0.81702 1.03265 1.21987 1.05207 0.99059 0.90779 1.23115 0.93332 1.01907 1.04124 1.23066 0.97178 1.03445 0.95591 0.90961 0.89185 0.92616 0.88944 0.89881 0.91077 0.88958 0.92819 0.90595 0.90016 0.99107 0.92112 0.94181 0.93498 0.97884 0.91909 0.90651 0.89055 0.86719 0.88565 0.88718 0.88765 0.87677 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.80 71.98 0.63 -1.42 16 2 C -0.08 -1.48 2.02 -11.54 -0.02 -1.50 16 3 H 0.10 1.86 6.81 -2.39 -0.02 1.84 16 4 C 0.52 13.44 6.92 87.66 0.61 14.05 16 5 O -0.58 -18.71 15.17 -3.03 -0.05 -18.76 16 6 N -0.61 -14.86 2.52 -817.40 -2.06 -16.92 16 7 C 0.09 2.20 5.90 86.35 0.51 2.71 16 8 C 0.07 1.94 3.02 30.69 0.09 2.03 16 9 H 0.05 1.53 6.29 -2.39 -0.02 1.51 16 10 C -0.14 -3.20 9.57 71.98 0.69 -2.51 16 11 O -0.38 -12.62 8.65 -148.98 -1.29 -13.91 16 12 C 0.12 3.61 0.68 -10.72 -0.01 3.60 16 13 C -0.12 -4.03 5.10 30.65 0.16 -3.87 16 14 C 0.19 8.89 5.04 86.36 0.44 9.33 16 15 N -0.61 -30.23 3.00 -699.96 -2.10 -32.33 16 16 C -0.26 -14.13 9.61 84.03 0.81 -13.33 16 17 H 0.07 3.46 7.85 -2.91 -0.02 3.43 16 18 C -0.05 -2.70 5.08 84.86 0.43 -2.27 16 19 N -0.94 -55.04 10.88 21.65 0.24 -54.81 16 20 Si 0.97 44.30 29.57 68.60 2.03 46.33 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 24 C 0.15 6.41 6.26 86.21 0.54 6.95 16 25 C -0.14 -4.54 4.31 30.50 0.13 -4.41 16 26 C 0.09 2.03 4.27 86.34 0.37 2.40 16 27 C -0.15 -2.97 4.89 -10.79 -0.05 -3.02 16 28 C -0.19 -3.36 10.18 30.62 0.31 -3.04 16 29 C -0.16 -2.24 9.68 30.62 0.30 -1.94 16 30 H 0.07 0.95 6.30 -2.39 -0.02 0.94 16 31 H 0.09 1.00 7.14 -2.39 -0.02 0.98 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 2.35 7.13 -2.38 -0.02 2.33 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 40 H -0.01 -0.50 7.82 -2.39 -0.02 -0.52 16 41 H 0.06 3.29 5.93 -2.39 -0.01 3.28 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 44 H 0.00 0.15 7.83 -2.39 -0.02 0.13 16 45 H 0.06 1.93 6.16 -2.39 -0.01 1.91 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 48 H 0.11 2.12 4.87 -2.39 -0.01 2.11 16 49 H 0.10 2.30 7.32 -2.39 -0.02 2.28 16 50 H 0.09 1.70 8.05 -2.38 -0.02 1.68 16 51 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 53 H 0.11 1.28 7.59 -2.39 -0.02 1.27 16 Total: -1.00 -68.51 395.31 3.57 -64.94 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.88 Total: 21.72 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.93 Total: 3.73 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -3.93 Total: -104.06 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.33 Total: -32.67 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -68.51 3.57 -64.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098580886.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.709 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds