Wall clock time and date at job start Tue Mar 31 2020 21:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53775 * 113.61529 * 2 1 4 4 C 1.53776 * 87.08301 * 89.11704 * 3 2 1 5 5 C 1.50700 * 113.61955 * 139.98027 * 4 3 2 6 6 O 1.21288 * 119.99635 * 1.52684 * 5 4 3 7 7 N 1.34774 * 120.00160 * 181.53176 * 5 4 3 8 8 C 1.47142 * 120.98773 * 359.97438 * 7 5 4 9 9 C 1.53306 * 108.37431 * 230.61560 * 8 7 5 10 10 H 1.09000 * 109.50916 * 67.57369 * 9 8 7 11 11 C 1.53002 * 109.51144 * 187.67367 * 9 8 7 12 12 O 1.42973 * 109.22493 * 307.64757 * 9 8 7 13 13 C 1.42891 * 114.20255 * 62.49349 * 12 9 8 14 14 C 1.52995 * 109.53991 * 177.76958 * 13 12 9 15 15 C 1.53195 * 109.34538 * 300.97095 * 14 13 12 16 16 N 1.46924 * 108.77323 * 305.42085 * 15 14 13 17 17 C 1.36942 * 120.63684 * 233.68767 * 16 15 14 18 18 H 1.07998 * 120.00125 * 152.78192 * 17 16 15 19 19 C 1.38810 * 120.00076 * 332.77708 * 17 16 15 20 20 N 1.31618 * 120.00165 * 159.75498 * 19 17 16 21 21 Si 1.86804 * 120.00121 * 339.76315 * 19 17 16 22 22 H 1.48490 * 109.47500 * 94.90400 * 21 19 17 23 23 H 1.48502 * 109.47209 * 214.90972 * 21 19 17 24 24 H 1.48505 * 109.46886 * 334.90462 * 21 19 17 25 25 C 1.46920 * 118.72552 * 53.65931 * 16 15 14 26 26 C 1.52984 * 109.56235 * 57.47953 * 13 12 9 27 27 C 1.47159 * 120.98283 * 179.97438 * 7 5 4 28 28 C 1.53781 * 87.17378 * 25.39045 * 4 3 2 29 29 H 1.08998 * 109.47306 * 59.99851 * 1 2 3 30 30 H 1.08998 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47192 * 300.00094 * 1 2 3 32 32 H 1.09001 * 112.85001 * 228.80313 * 2 1 3 33 33 H 1.09003 * 113.61504 * 334.56627 * 3 2 1 34 34 H 1.09004 * 113.61573 * 203.66668 * 3 2 1 35 35 H 1.09004 * 113.61683 * 270.79964 * 4 3 2 36 36 H 1.08995 * 109.68666 * 350.33900 * 8 7 5 37 37 H 1.09007 * 109.68645 * 110.89430 * 8 7 5 38 38 H 1.09002 * 109.47220 * 60.00402 * 11 9 8 39 39 H 1.08998 * 109.46693 * 179.97438 * 11 9 8 40 40 H 1.08993 * 109.47184 * 300.00253 * 11 9 8 41 41 H 1.09000 * 109.49340 * 181.00921 * 14 13 12 42 42 H 1.09005 * 109.51517 * 60.94440 * 14 13 12 43 43 H 1.08994 * 109.58789 * 65.20858 * 15 14 13 44 44 H 1.09001 * 109.58569 * 185.63314 * 15 14 13 45 45 H 0.96998 * 120.00066 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.58848 * 186.55344 * 25 16 15 47 47 H 1.09001 * 109.58207 * 66.13591 * 25 16 15 48 48 H 1.08998 * 109.49426 * 178.99126 * 26 13 12 49 49 H 1.09008 * 109.48841 * 299.06431 * 26 13 12 50 50 H 1.08997 * 109.67748 * 9.77861 * 27 7 5 51 51 H 1.08999 * 109.67808 * 249.23270 * 27 7 5 52 52 H 1.09004 * 113.61748 * 89.15722 * 28 4 3 53 53 H 1.08997 * 113.61638 * 220.06351 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0929 1.3468 1.5356 5 6 3.3078 1.9346 2.2060 6 8 4.1939 2.4217 1.5362 7 7 3.4098 1.9190 3.5498 8 6 2.3476 1.3341 4.3834 9 6 1.9692 2.3502 5.4671 10 1 1.4883 3.2127 5.0056 11 6 1.0063 1.7004 6.4630 12 8 3.1519 2.7719 6.1508 13 6 4.1003 3.4446 5.3201 14 6 5.2925 3.8956 6.1663 15 6 4.8020 4.8299 7.2769 16 7 4.0426 5.9305 6.6679 17 6 4.3666 7.2338 6.9356 18 1 4.1471 8.0045 6.2116 19 6 4.9770 7.5644 8.1377 20 7 5.6412 8.6952 8.2494 21 14 4.8560 6.4043 9.5968 22 1 6.0550 5.5292 9.6342 23 1 4.7802 7.1941 10.8522 24 1 3.6363 5.5676 9.4641 25 6 2.9294 5.6058 5.7657 26 6 3.4401 4.6628 4.6718 27 6 4.5867 2.4865 4.2269 28 6 2.1448 -0.1841 1.3994 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9532 -0.6616 -0.7558 33 1 1.4945 2.1704 -0.4289 34 1 3.1590 1.4426 -0.4009 35 1 1.1574 1.7163 1.9556 36 1 1.4764 1.1135 3.7666 37 1 2.7095 0.4176 4.8496 38 1 1.4884 0.8392 6.9255 39 1 0.7381 2.4233 7.2334 40 1 0.1069 1.3758 5.9398 41 1 6.0070 4.4243 5.5354 42 1 5.7743 3.0245 6.6103 43 1 4.1589 4.2774 7.9618 44 1 5.6571 5.2325 7.8199 45 1 6.0674 8.9264 9.0894 46 1 2.5486 6.5205 5.3114 47 1 2.1343 5.1163 6.3281 48 1 4.1693 5.1853 4.0526 49 1 2.6039 4.3370 4.0530 50 1 5.1974 3.0309 3.5067 51 1 5.1739 1.6852 4.6755 52 1 3.1575 -0.5869 1.3818 53 1 1.4923 -0.7070 2.0986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098583927.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:32 Heat of formation + Delta-G solvation = -31.534170 kcal Electronic energy + Delta-G solvation = -31869.380224 eV Core-core repulsion = 27935.506593 eV Total energy + Delta-G solvation = -3933.873631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.11423 -39.82096 -37.88344 -36.67667 -34.68700 -33.63692 -31.73945 -30.45697 -30.43479 -29.88185 -27.61820 -26.48666 -26.00879 -25.02269 -23.59977 -23.07297 -21.78186 -21.07075 -19.74272 -19.12587 -18.70247 -17.70912 -17.00893 -16.46722 -15.97376 -15.63543 -15.36373 -15.09065 -14.70186 -14.56028 -14.40911 -13.98145 -13.81185 -13.71321 -13.42984 -13.30871 -13.05953 -12.81015 -12.65295 -12.48044 -12.35616 -12.30495 -12.03230 -11.83568 -11.77968 -11.63053 -11.61321 -11.36015 -11.25322 -10.96639 -10.70998 -10.65066 -10.63184 -10.40899 -10.23169 -10.08847 -9.82774 -9.62710 -9.59711 -9.34139 -8.61656 -8.45219 -6.91512 -5.90491 -3.25922 2.49494 2.79713 3.36692 3.52446 3.57746 3.72497 4.10927 4.19586 4.25249 4.36551 4.55096 4.57798 4.61509 4.79195 4.93347 4.97514 5.02606 5.06378 5.10666 5.12717 5.20093 5.28587 5.31128 5.37494 5.42712 5.44889 5.47422 5.49133 5.53601 5.65469 5.66760 5.77384 5.78547 5.83032 5.87967 5.89113 6.03323 6.08060 6.09834 6.17642 6.21424 6.25539 6.33460 6.42588 6.61098 6.66726 6.75141 6.98022 7.26885 7.44610 8.00783 8.07041 8.37114 8.99055 9.76930 10.15930 11.25544 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.003160 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.604357 B = 8858.829173 C = 9295.742161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.137 4.137 5 C 0.524 3.476 6 O -0.539 6.539 7 N -0.610 5.610 8 C 0.081 3.919 9 C 0.068 3.932 10 H 0.068 0.932 11 C -0.142 4.142 12 O -0.358 6.358 13 C 0.119 3.881 14 C -0.119 4.119 15 C 0.134 3.866 16 N -0.605 5.605 17 C -0.258 4.258 18 H 0.084 0.916 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.883 3.117 22 H -0.289 1.289 23 H -0.305 1.305 24 H -0.268 1.268 25 C 0.157 3.843 26 C -0.153 4.153 27 C 0.088 3.912 28 C -0.118 4.118 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.262 0.738 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.100 0.900 51 H 0.071 0.929 52 H 0.084 0.916 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -21.503 -12.627 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.151 4.151 4 C -0.158 4.158 5 C 0.313 3.687 6 O -0.415 6.415 7 N -0.343 5.343 8 C -0.042 4.042 9 C 0.009 3.991 10 H 0.085 0.915 11 C -0.200 4.200 12 O -0.277 6.277 13 C 0.079 3.921 14 C -0.159 4.159 15 C 0.008 3.992 16 N -0.328 5.328 17 C -0.386 4.386 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.554 5.554 21 Si 0.713 3.287 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.193 1.193 25 C 0.030 3.970 26 C -0.193 4.193 27 C -0.034 4.034 28 C -0.156 4.156 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.118 0.882 51 H 0.089 0.911 52 H 0.103 0.897 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.619 -21.129 -12.695 26.840 hybrid contribution -0.015 -0.544 0.746 0.924 sum -10.634 -21.673 -11.948 26.937 Atomic orbital electron populations 1.21616 0.93658 1.01890 1.02134 1.22350 0.95923 0.97827 0.97342 1.22894 1.02464 0.96707 0.93030 1.22771 0.97269 0.97830 0.97908 1.20532 0.88248 0.78565 0.81393 1.90690 1.41660 1.45870 1.63313 1.48139 1.21079 1.59501 1.05553 1.22508 0.91030 0.97148 0.93522 1.22426 0.87701 0.96007 0.92935 0.91462 1.21707 0.97543 1.01421 0.99307 1.88033 1.28438 1.75712 1.35494 1.21723 0.90137 0.90362 0.89882 1.22022 0.94938 0.99664 0.99260 1.21237 0.95483 0.88876 0.93582 1.44324 1.32549 1.02393 1.53559 1.18928 1.36206 0.83240 1.00235 0.89805 1.25269 0.98884 0.95995 0.97513 1.69837 1.34791 1.24626 1.26111 0.86935 0.78445 0.80184 0.83093 1.21720 1.23344 1.19252 1.20780 0.89836 0.96092 0.90244 1.22517 1.00576 0.96839 0.99351 1.22439 0.87763 0.97454 0.95749 1.22951 1.01853 0.93232 0.97578 0.92134 0.92338 0.92452 0.90179 0.90903 0.88711 0.87079 0.89216 0.90672 0.91779 0.91148 0.91233 0.90134 0.91880 0.94682 0.91173 0.92840 0.92163 0.95734 0.90917 0.92733 0.88214 0.91110 0.89730 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.59 37.16 0.36 -0.38 16 2 C -0.12 -0.78 4.55 -89.72 -0.41 -1.18 16 3 C -0.11 -1.00 6.99 -25.92 -0.18 -1.18 16 4 C -0.14 -1.23 2.40 -90.96 -0.22 -1.45 16 5 C 0.52 6.79 7.24 -10.99 -0.08 6.71 16 6 O -0.54 -9.04 15.38 5.55 0.09 -8.96 16 7 N -0.61 -7.55 2.52 -172.28 -0.43 -7.99 16 8 C 0.08 0.79 5.80 -3.53 -0.02 0.77 16 9 C 0.07 0.80 3.01 -26.57 -0.08 0.72 16 10 H 0.07 0.84 6.29 -51.93 -0.33 0.52 16 11 C -0.14 -1.34 9.57 37.16 0.36 -0.98 16 12 O -0.36 -5.62 8.64 -35.23 -0.30 -5.92 16 13 C 0.12 1.92 0.68 -90.48 -0.06 1.86 16 14 C -0.12 -2.16 5.10 -26.63 -0.14 -2.29 16 15 C 0.13 2.99 3.96 -3.71 -0.01 2.98 16 16 N -0.60 -14.66 2.77 -172.33 -0.48 -15.14 16 17 C -0.26 -7.33 10.04 -15.06 -0.15 -7.48 16 18 H 0.08 2.54 8.05 -52.49 -0.42 2.12 16 19 C 0.02 0.65 5.24 -17.43 -0.09 0.55 16 20 N -0.91 -28.32 13.97 55.49 0.78 -27.54 16 21 Si 0.88 22.82 24.35 -169.99 -4.14 18.68 16 22 H -0.29 -7.23 6.70 56.52 0.38 -6.85 16 23 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 24 H -0.27 -6.83 6.46 56.52 0.36 -6.46 16 25 C 0.16 3.19 6.28 -3.71 -0.02 3.16 16 26 C -0.15 -2.66 4.33 -26.64 -0.12 -2.77 16 27 C 0.09 1.27 5.30 -3.53 -0.02 1.25 16 28 C -0.12 -0.85 7.04 -25.83 -0.18 -1.03 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.30 7.34 -51.93 -0.38 -0.08 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.09 1.01 7.45 -51.93 -0.39 0.62 16 35 H 0.11 0.84 6.77 -51.93 -0.35 0.49 16 36 H 0.09 0.64 5.82 -51.93 -0.30 0.34 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 0.80 6.67 -51.93 -0.35 0.46 16 44 H 0.07 1.71 4.49 -51.93 -0.23 1.48 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 47 H 0.02 0.50 7.83 -51.93 -0.41 0.09 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.05 0.86 6.16 -51.92 -0.32 0.54 16 50 H 0.10 1.58 7.07 -51.93 -0.37 1.21 16 51 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 53 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 389.04 15.07 5.86 5.86 Total: -1.00 -33.43 389.04 -9.06 -42.49 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -9.36 Total: -0.74 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.07 Total: -0.76 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.14 Total: -50.66 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.22 Total: -14.88 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.14 Total: 18.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.43 -9.06 -42.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098583927.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.958 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds