Wall clock time and date at job start Tue Mar 31 2020 21:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53775 * 113.61529 * 2 1 4 4 C 1.53776 * 87.08301 * 89.11704 * 3 2 1 5 5 C 1.50700 * 113.61955 * 139.98027 * 4 3 2 6 6 O 1.21288 * 119.99635 * 1.52684 * 5 4 3 7 7 N 1.34774 * 120.00160 * 181.53176 * 5 4 3 8 8 C 1.47142 * 120.98773 * 359.97438 * 7 5 4 9 9 C 1.53306 * 108.37431 * 230.61560 * 8 7 5 10 10 H 1.09000 * 109.50916 * 67.57369 * 9 8 7 11 11 C 1.53002 * 109.51144 * 187.67367 * 9 8 7 12 12 O 1.42973 * 109.22493 * 307.64757 * 9 8 7 13 13 C 1.42891 * 114.20255 * 62.49349 * 12 9 8 14 14 C 1.52995 * 109.53991 * 177.76958 * 13 12 9 15 15 C 1.53195 * 109.34538 * 300.97095 * 14 13 12 16 16 N 1.46924 * 108.77323 * 305.42085 * 15 14 13 17 17 C 1.36942 * 120.63684 * 233.68767 * 16 15 14 18 18 H 1.07998 * 120.00125 * 152.78192 * 17 16 15 19 19 C 1.38810 * 120.00076 * 332.77708 * 17 16 15 20 20 N 1.31618 * 120.00165 * 159.75498 * 19 17 16 21 21 Si 1.86804 * 120.00121 * 339.76315 * 19 17 16 22 22 H 1.48490 * 109.47500 * 94.90400 * 21 19 17 23 23 H 1.48502 * 109.47209 * 214.90972 * 21 19 17 24 24 H 1.48505 * 109.46886 * 334.90462 * 21 19 17 25 25 C 1.46920 * 118.72552 * 53.65931 * 16 15 14 26 26 C 1.52984 * 109.56235 * 57.47953 * 13 12 9 27 27 C 1.47159 * 120.98283 * 179.97438 * 7 5 4 28 28 C 1.53781 * 87.17378 * 25.39045 * 4 3 2 29 29 H 1.08998 * 109.47306 * 59.99851 * 1 2 3 30 30 H 1.08998 * 109.47475 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47192 * 300.00094 * 1 2 3 32 32 H 1.09001 * 112.85001 * 228.80313 * 2 1 3 33 33 H 1.09003 * 113.61504 * 334.56627 * 3 2 1 34 34 H 1.09004 * 113.61573 * 203.66668 * 3 2 1 35 35 H 1.09004 * 113.61683 * 270.79964 * 4 3 2 36 36 H 1.08995 * 109.68666 * 350.33900 * 8 7 5 37 37 H 1.09007 * 109.68645 * 110.89430 * 8 7 5 38 38 H 1.09002 * 109.47220 * 60.00402 * 11 9 8 39 39 H 1.08998 * 109.46693 * 179.97438 * 11 9 8 40 40 H 1.08993 * 109.47184 * 300.00253 * 11 9 8 41 41 H 1.09000 * 109.49340 * 181.00921 * 14 13 12 42 42 H 1.09005 * 109.51517 * 60.94440 * 14 13 12 43 43 H 1.08994 * 109.58789 * 65.20858 * 15 14 13 44 44 H 1.09001 * 109.58569 * 185.63314 * 15 14 13 45 45 H 0.96998 * 120.00066 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.58848 * 186.55344 * 25 16 15 47 47 H 1.09001 * 109.58207 * 66.13591 * 25 16 15 48 48 H 1.08998 * 109.49426 * 178.99126 * 26 13 12 49 49 H 1.09008 * 109.48841 * 299.06431 * 26 13 12 50 50 H 1.08997 * 109.67748 * 9.77861 * 27 7 5 51 51 H 1.08999 * 109.67808 * 249.23270 * 27 7 5 52 52 H 1.09004 * 113.61748 * 89.15722 * 28 4 3 53 53 H 1.08997 * 113.61638 * 220.06351 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0929 1.3468 1.5356 5 6 3.3078 1.9346 2.2060 6 8 4.1939 2.4217 1.5362 7 7 3.4098 1.9190 3.5498 8 6 2.3476 1.3341 4.3834 9 6 1.9692 2.3502 5.4671 10 1 1.4883 3.2127 5.0056 11 6 1.0063 1.7004 6.4630 12 8 3.1519 2.7719 6.1508 13 6 4.1003 3.4446 5.3201 14 6 5.2925 3.8956 6.1663 15 6 4.8020 4.8299 7.2769 16 7 4.0426 5.9305 6.6679 17 6 4.3666 7.2338 6.9356 18 1 4.1471 8.0045 6.2116 19 6 4.9770 7.5644 8.1377 20 7 5.6412 8.6952 8.2494 21 14 4.8560 6.4043 9.5968 22 1 6.0550 5.5292 9.6342 23 1 4.7802 7.1941 10.8522 24 1 3.6363 5.5676 9.4641 25 6 2.9294 5.6058 5.7657 26 6 3.4401 4.6628 4.6718 27 6 4.5867 2.4865 4.2269 28 6 2.1448 -0.1841 1.3994 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9532 -0.6616 -0.7558 33 1 1.4945 2.1704 -0.4289 34 1 3.1590 1.4426 -0.4009 35 1 1.1574 1.7163 1.9556 36 1 1.4764 1.1135 3.7666 37 1 2.7095 0.4176 4.8496 38 1 1.4884 0.8392 6.9255 39 1 0.7381 2.4233 7.2334 40 1 0.1069 1.3758 5.9398 41 1 6.0070 4.4243 5.5354 42 1 5.7743 3.0245 6.6103 43 1 4.1589 4.2774 7.9618 44 1 5.6571 5.2325 7.8199 45 1 6.0674 8.9264 9.0894 46 1 2.5486 6.5205 5.3114 47 1 2.1343 5.1163 6.3281 48 1 4.1693 5.1853 4.0526 49 1 2.6039 4.3370 4.0530 50 1 5.1974 3.0309 3.5067 51 1 5.1739 1.6852 4.6755 52 1 3.1575 -0.5869 1.3818 53 1 1.4923 -0.7070 2.0986 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098583927.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:31 Heat of formation + Delta-G solvation = -52.450089 kcal Electronic energy + Delta-G solvation = -31870.287206 eV Core-core repulsion = 27935.506593 eV Total energy + Delta-G solvation = -3934.780614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.11586 -40.82337 -38.83484 -38.14894 -35.79339 -35.11695 -33.58852 -32.08243 -31.57449 -30.69739 -28.85028 -27.32494 -26.63373 -26.30563 -25.07754 -24.44231 -23.09944 -22.40308 -20.87278 -20.25843 -19.37990 -18.96802 -18.55765 -17.55163 -17.25316 -17.05634 -16.59652 -16.15291 -15.98454 -15.67006 -15.53749 -15.51484 -15.27189 -14.74747 -14.45789 -14.30723 -14.21197 -14.05292 -13.70437 -13.60773 -13.48369 -13.31124 -13.22063 -13.13677 -12.88485 -12.85617 -12.59406 -12.56634 -12.32201 -12.19109 -12.12277 -11.89439 -11.76511 -11.58702 -11.53803 -11.36979 -11.20252 -11.18459 -10.89306 -10.72716 -10.58642 -9.54346 -8.94716 -8.18153 -5.50300 1.29406 1.40312 1.51062 1.53543 1.85156 2.40574 2.63801 3.04827 3.27955 3.41115 3.52919 3.59891 3.63294 3.70468 3.77533 3.78118 3.88712 3.99801 4.13248 4.20982 4.24781 4.38497 4.44722 4.48216 4.52733 4.59771 4.60989 4.63600 4.65867 4.74800 4.75693 4.78151 4.82003 4.87233 4.89288 4.95633 4.95921 5.01808 5.06800 5.09895 5.14221 5.14805 5.22289 5.30966 5.36188 5.38403 5.41351 5.58358 5.83598 6.10373 6.31427 6.33826 6.89251 7.09875 7.60128 8.01719 9.01806 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022242 B = 0.003160 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.604357 B = 8858.829173 C = 9295.742161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.123 4.123 4 C -0.133 4.133 5 C 0.518 3.482 6 O -0.587 6.587 7 N -0.609 5.609 8 C 0.084 3.916 9 C 0.058 3.942 10 H 0.059 0.941 11 C -0.136 4.136 12 O -0.375 6.375 13 C 0.129 3.871 14 C -0.116 4.116 15 C 0.132 3.868 16 N -0.618 5.618 17 C -0.250 4.250 18 H 0.049 0.951 19 C -0.034 4.034 20 N -0.958 5.958 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.310 1.310 24 H -0.260 1.260 25 C 0.157 3.843 26 C -0.141 4.141 27 C 0.096 3.904 28 C -0.110 4.110 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.262 0.738 46 H 0.049 0.951 47 H 0.035 0.965 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.072 0.928 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 -25.594 -12.596 31.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.124 4.124 3 C -0.161 4.161 4 C -0.154 4.154 5 C 0.308 3.692 6 O -0.467 6.467 7 N -0.341 5.341 8 C -0.038 4.038 9 C 0.000 4.000 10 H 0.077 0.923 11 C -0.194 4.194 12 O -0.294 6.294 13 C 0.088 3.912 14 C -0.155 4.155 15 C 0.008 3.992 16 N -0.343 5.343 17 C -0.379 4.379 18 H 0.067 0.933 19 C -0.229 4.229 20 N -0.604 5.604 21 Si 0.778 3.222 22 H -0.202 1.202 23 H -0.239 1.239 24 H -0.184 1.184 25 C 0.032 3.968 26 C -0.180 4.180 27 C -0.028 4.028 28 C -0.148 4.148 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.090 0.910 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.116 -25.280 -12.671 31.171 hybrid contribution 0.702 0.767 0.635 1.219 sum -12.414 -24.512 -12.036 29.997 Atomic orbital electron populations 1.21626 0.92169 1.02785 1.02556 1.22318 0.96927 0.95906 0.97211 1.22909 1.01374 0.98644 0.93195 1.22912 0.96078 0.99104 0.97293 1.21304 0.88827 0.77720 0.81302 1.90674 1.43658 1.48003 1.64355 1.48244 1.21050 1.59077 1.05749 1.22706 0.91408 0.96641 0.93024 1.22749 0.86607 0.96511 0.94119 0.92334 1.21723 0.98209 1.00836 0.98604 1.88009 1.29547 1.75608 1.36269 1.21434 0.89623 0.90216 0.89905 1.21917 0.95889 0.99588 0.98117 1.21218 0.94421 0.88732 0.94858 1.44440 1.34163 1.01393 1.54278 1.18852 1.35056 0.84647 0.99388 0.93331 1.25895 0.99083 0.97839 1.00095 1.69966 1.36631 1.27062 1.26729 0.85858 0.79078 0.78246 0.78992 1.20173 1.23924 1.18445 1.20869 0.89087 0.96475 0.90413 1.22342 1.00735 0.96743 0.98177 1.22162 0.88591 0.97317 0.94701 1.22941 1.01852 0.91608 0.98370 0.92173 0.91186 0.91659 0.90030 0.90665 0.91341 0.84668 0.85782 0.89046 0.91142 0.92979 0.87796 0.91128 0.89229 0.94460 0.93399 0.92898 0.93268 0.94675 0.93018 0.90756 0.90331 0.89723 0.90967 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.59 71.98 0.69 -0.24 16 2 C -0.11 -1.10 4.55 -10.21 -0.05 -1.15 16 3 C -0.12 -2.01 6.99 31.12 0.22 -1.79 16 4 C -0.13 -2.01 2.40 -11.02 -0.03 -2.03 16 5 C 0.52 12.56 7.24 87.66 0.63 13.20 16 6 O -0.59 -19.86 15.38 -3.05 -0.05 -19.91 16 7 N -0.61 -13.52 2.52 -817.35 -2.06 -15.58 16 8 C 0.08 1.25 5.80 86.36 0.50 1.75 16 9 C 0.06 1.16 3.01 30.70 0.09 1.25 16 10 H 0.06 1.27 6.29 -2.39 -0.02 1.25 16 11 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 12 O -0.37 -10.74 8.64 -148.98 -1.29 -12.02 16 13 C 0.13 3.96 0.68 -10.70 -0.01 3.96 16 14 C -0.12 -4.08 5.10 30.66 0.16 -3.92 16 15 C 0.13 5.84 3.96 86.36 0.34 6.18 16 16 N -0.62 -30.33 2.77 -699.12 -1.94 -32.27 16 17 C -0.25 -14.71 10.04 84.03 0.84 -13.86 16 18 H 0.05 3.13 8.05 -2.91 -0.02 3.11 16 19 C -0.03 -2.07 5.24 84.86 0.44 -1.63 16 20 N -0.96 -61.67 13.97 21.65 0.30 -61.36 16 21 Si 0.95 47.97 24.35 68.60 1.67 49.64 16 22 H -0.27 -13.13 6.70 99.48 0.67 -12.47 16 23 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 24 H -0.26 -12.66 6.46 99.48 0.64 -12.02 16 25 C 0.16 6.38 6.28 86.36 0.54 6.93 16 26 C -0.14 -4.82 4.33 30.65 0.13 -4.69 16 27 C 0.10 2.60 5.30 86.35 0.46 3.05 16 28 C -0.11 -1.18 7.04 31.18 0.22 -0.96 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.36 7.34 -2.39 -0.02 0.35 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.07 1.48 7.45 -2.38 -0.02 1.46 16 35 H 0.14 1.41 6.77 -2.39 -0.02 1.39 16 36 H 0.12 1.02 5.82 -2.39 -0.01 1.00 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 42 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 43 H 0.04 1.64 6.67 -2.39 -0.02 1.62 16 44 H 0.05 2.32 4.49 -2.39 -0.01 2.30 16 45 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.04 1.38 7.83 -2.39 -0.02 1.36 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.07 2.24 6.16 -2.38 -0.01 2.22 16 50 H 0.08 2.49 7.07 -2.39 -0.02 2.47 16 51 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 52 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 53 H 0.10 0.59 8.10 -2.39 -0.02 0.57 16 Total: -1.00 -76.52 389.04 3.29 -73.22 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.77 Total: 13.55 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.88 Total: 4.73 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.70 Total: -109.22 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -1.33 Total: -31.93 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.67 Total: 49.64 kcal Total: -76.52 3.29 -73.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098583927.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.772 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds