Wall clock time and date at job start Tue Mar 31 2020 21:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53784 * 113.61696 * 2 1 4 4 C 1.53778 * 87.07637 * 89.20177 * 3 2 1 5 5 C 1.50703 * 113.61352 * 139.98548 * 4 3 2 6 6 O 1.21285 * 119.99850 * 1.52671 * 5 4 3 7 7 N 1.34772 * 120.00164 * 181.52860 * 5 4 3 8 8 C 1.47164 * 120.95192 * 0.04568 * 7 5 4 9 9 C 1.53293 * 108.37359 * 129.44436 * 8 7 5 10 10 H 1.08998 * 109.51366 * 292.31186 * 9 8 7 11 11 C 1.52999 * 109.51164 * 172.21504 * 9 8 7 12 12 O 1.42971 * 109.27270 * 52.26607 * 9 8 7 13 13 C 1.42900 * 114.19934 * 297.53905 * 12 9 8 14 14 C 1.52983 * 109.56290 * 302.54943 * 13 12 9 15 15 C 1.53194 * 109.35282 * 300.93712 * 14 13 12 16 16 N 1.46939 * 108.77288 * 305.41993 * 15 14 13 17 17 C 1.36934 * 120.64193 * 233.65988 * 16 15 14 18 18 H 1.08005 * 120.00440 * 27.70427 * 17 16 15 19 19 C 1.38814 * 119.99695 * 207.70413 * 17 16 15 20 20 N 1.31615 * 120.00076 * 17.35788 * 19 17 16 21 21 Si 1.86807 * 119.99605 * 197.36500 * 19 17 16 22 22 H 1.48503 * 109.47319 * 59.99860 * 21 19 17 23 23 H 1.48503 * 109.46868 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46800 * 299.99562 * 21 19 17 25 25 C 1.46917 * 118.71006 * 53.67985 * 16 15 14 26 26 C 1.52996 * 109.55465 * 182.24073 * 13 12 9 27 27 C 1.47156 * 120.98821 * 179.97438 * 7 5 4 28 28 C 1.53780 * 87.17903 * 25.39195 * 4 3 2 29 29 H 1.09001 * 109.46940 * 59.99590 * 1 2 3 30 30 H 1.08991 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46585 * 299.99898 * 1 2 3 32 32 H 1.09006 * 112.84891 * 228.80861 * 2 1 3 33 33 H 1.09001 * 113.60998 * 334.65610 * 3 2 1 34 34 H 1.09000 * 113.61439 * 203.74849 * 3 2 1 35 35 H 1.09000 * 113.61651 * 270.79873 * 4 3 2 36 36 H 1.09000 * 109.72805 * 9.70352 * 8 7 5 37 37 H 1.08997 * 109.64578 * 249.14034 * 8 7 5 38 38 H 1.09003 * 109.47546 * 300.09495 * 11 9 8 39 39 H 1.09004 * 109.47153 * 180.09707 * 11 9 8 40 40 H 1.08999 * 109.47020 * 60.09832 * 11 9 8 41 41 H 1.08998 * 109.48969 * 60.89567 * 14 13 12 42 42 H 1.09004 * 109.49471 * 180.97065 * 14 13 12 43 43 H 1.09009 * 109.58462 * 185.63697 * 15 14 13 44 44 H 1.09003 * 109.59084 * 65.20814 * 15 14 13 45 45 H 0.97001 * 120.00010 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58611 * 186.53585 * 25 16 15 47 47 H 1.09004 * 109.70338 * 66.18119 * 25 16 15 48 48 H 1.09009 * 109.48873 * 179.03602 * 26 13 12 49 49 H 1.09002 * 109.49087 * 299.08212 * 26 13 12 50 50 H 1.08999 * 109.67816 * 110.77505 * 27 7 5 51 51 H 1.09000 * 109.67963 * 350.22710 * 27 7 5 52 52 H 1.08998 * 113.61274 * 89.15317 * 28 4 3 53 53 H 1.08996 * 113.61853 * 220.05958 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0951 1.3457 1.5356 5 6 3.3109 1.9333 2.2048 6 8 4.1960 2.4208 1.5341 7 7 3.4147 1.9168 3.5484 8 6 2.3538 1.3297 4.3823 9 6 3.0000 0.3463 5.3648 10 1 3.3964 -0.5084 4.8166 11 6 1.9522 -0.1335 6.3711 12 8 4.0633 1.0031 6.0591 13 6 5.1285 1.4457 5.2155 14 6 5.6993 0.2545 4.4437 15 6 6.2099 -0.7955 5.4355 16 7 7.1642 -0.1559 6.3517 17 6 8.4199 -0.6740 6.5247 18 1 8.8869 -1.2354 5.7289 19 6 9.0925 -0.4777 7.7230 20 7 8.4286 -0.1074 8.7974 21 14 10.9402 -0.7391 7.8105 22 1 11.6162 0.1843 6.8641 23 1 11.4138 -0.4661 9.1912 24 1 11.2593 -2.1428 7.4457 25 6 6.7448 1.0498 7.0788 26 6 6.2283 2.0798 6.0693 27 6 4.5924 2.4839 4.2243 28 6 2.1467 -0.1851 1.3985 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.9533 -0.6616 -0.7559 33 1 1.4940 2.1706 -0.4275 34 1 3.1586 1.4429 -0.4022 35 1 1.1601 1.7151 1.9571 36 1 1.6393 0.8016 3.7509 37 1 1.8433 2.1185 4.9349 38 1 1.5563 0.7216 6.9190 39 1 2.4129 -0.8314 7.0704 40 1 1.1411 -0.6326 5.8410 41 1 4.9192 -0.1828 3.8207 42 1 6.5229 0.5904 3.8135 43 1 6.7071 -1.5995 4.8927 44 1 5.3720 -1.1991 6.0040 45 1 8.8987 0.0294 9.6348 46 1 7.5950 1.4639 7.6208 47 1 5.9510 0.7975 7.7819 48 1 7.0477 2.4016 5.4265 49 1 5.8243 2.9408 6.6020 50 1 4.3076 3.3895 4.7599 51 1 5.3607 2.7188 3.4877 52 1 3.1594 -0.5878 1.3792 53 1 1.4952 -0.7084 2.0982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098583930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:35 Heat of formation + Delta-G solvation = -55.729629 kcal Electronic energy + Delta-G solvation = -31933.912662 eV Core-core repulsion = 27998.989837 eV Total energy + Delta-G solvation = -3934.922825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.09177 -40.74734 -38.78588 -37.96047 -35.76757 -35.08588 -33.33888 -31.70948 -31.37442 -30.61165 -28.75491 -27.32855 -26.66549 -26.37578 -24.96723 -24.15493 -23.08304 -22.22221 -20.72360 -20.28592 -19.32177 -18.91415 -18.51342 -17.44737 -17.00829 -16.88647 -16.61371 -16.14701 -15.88788 -15.62583 -15.49814 -15.20568 -15.01352 -14.91241 -14.52509 -14.30234 -14.03687 -13.86890 -13.47383 -13.37906 -13.22937 -13.18325 -13.10372 -13.03833 -12.83769 -12.80259 -12.61306 -12.59943 -12.25996 -12.16928 -12.10267 -11.89729 -11.85099 -11.73177 -11.44061 -11.31252 -11.20824 -11.15587 -10.78985 -10.62053 -10.52944 -9.51847 -8.68677 -7.88006 -5.33373 1.45073 1.47943 1.54016 1.54794 1.85742 2.49882 2.70668 3.25820 3.41318 3.51394 3.59665 3.63506 3.68684 3.76493 3.79112 3.88990 3.91367 4.06404 4.15138 4.23354 4.36117 4.42412 4.47092 4.53463 4.59763 4.65294 4.66949 4.68984 4.71924 4.77747 4.81317 4.85010 4.88022 4.94060 4.95892 5.03784 5.06954 5.09361 5.13584 5.15544 5.21955 5.26941 5.33977 5.38241 5.39439 5.44412 5.59408 5.62431 5.77926 6.34170 6.37493 6.39816 7.10070 7.13884 7.84688 8.37936 9.18140 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018916 B = 0.003129 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.885954 B = 8947.636930 C = 9305.442106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C -0.119 4.119 4 C -0.130 4.130 5 C 0.518 3.482 6 O -0.586 6.586 7 N -0.609 5.609 8 C 0.084 3.916 9 C 0.060 3.940 10 H 0.056 0.944 11 C -0.136 4.136 12 O -0.376 6.376 13 C 0.129 3.871 14 C -0.136 4.136 15 C 0.155 3.845 16 N -0.608 5.608 17 C -0.268 4.268 18 H 0.063 0.937 19 C -0.047 4.047 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.276 1.276 25 C 0.191 3.809 26 C -0.119 4.119 27 C 0.096 3.904 28 C -0.118 4.118 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.001 0.999 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.065 0.935 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.859 2.016 -13.985 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 C -0.157 4.157 4 C -0.151 4.151 5 C 0.308 3.692 6 O -0.467 6.467 7 N -0.341 5.341 8 C -0.038 4.038 9 C 0.002 3.998 10 H 0.074 0.926 11 C -0.194 4.194 12 O -0.296 6.296 13 C 0.089 3.911 14 C -0.175 4.175 15 C 0.029 3.971 16 N -0.331 5.331 17 C -0.398 4.398 18 H 0.080 0.920 19 C -0.243 4.243 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.201 1.201 25 C 0.066 3.934 26 C -0.158 4.158 27 C -0.028 4.028 28 C -0.156 4.156 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.019 0.981 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.099 0.901 51 H 0.098 0.902 52 H 0.083 0.917 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.343 2.312 -13.980 25.618 hybrid contribution 1.699 -0.068 0.315 1.729 sum -19.644 2.245 -13.665 24.035 Atomic orbital electron populations 1.21616 0.91843 1.02754 1.02741 1.22324 0.97128 0.96136 0.96771 1.22883 1.01335 0.98503 0.93012 1.22917 0.96236 0.98499 0.97447 1.21335 0.88888 0.77770 0.81184 1.90662 1.43576 1.48203 1.64215 1.48258 1.20837 1.59165 1.05859 1.22698 0.89643 0.97688 0.93777 1.22690 0.88428 0.94238 0.94433 0.92584 1.21720 0.97163 1.01860 0.98614 1.88051 1.30329 1.76739 1.34497 1.21443 0.87051 0.92790 0.89831 1.22310 0.99786 0.97499 0.97937 1.20814 0.91758 0.93585 0.90939 1.44271 1.11353 1.27674 1.49824 1.19453 0.92067 1.31476 0.96838 0.91971 1.25778 1.02523 1.01580 0.94424 1.70189 1.35539 1.52387 0.99601 0.85359 0.80585 0.78244 0.76355 1.20561 1.21729 1.20126 1.20369 0.96399 0.85425 0.91256 1.22020 0.96152 0.98841 0.98821 1.22161 0.88953 0.96264 0.95382 1.22983 1.01597 0.92227 0.98808 0.91827 0.91445 0.91432 0.90341 0.89991 0.91559 0.84085 0.85679 0.89224 0.91250 0.93327 0.87615 0.91238 0.92943 0.93553 0.96667 0.94004 0.92869 0.98133 0.91579 0.90592 0.90080 0.90220 0.91670 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.59 71.98 0.69 -0.33 16 2 C -0.11 -1.29 4.55 -10.21 -0.05 -1.33 16 3 C -0.12 -2.01 6.99 31.12 0.22 -1.79 16 4 C -0.13 -2.11 2.38 -11.01 -0.03 -2.14 16 5 C 0.52 13.34 7.24 87.66 0.63 13.98 16 6 O -0.59 -20.48 15.38 -3.05 -0.05 -20.52 16 7 N -0.61 -14.97 2.52 -817.46 -2.06 -17.03 16 8 C 0.08 1.49 5.79 86.35 0.50 1.99 16 9 C 0.06 1.42 3.01 30.69 0.09 1.51 16 10 H 0.06 1.43 6.29 -2.39 -0.02 1.41 16 11 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 12 O -0.38 -12.61 8.65 -148.98 -1.29 -13.90 16 13 C 0.13 4.46 0.68 -10.73 -0.01 4.45 16 14 C -0.14 -5.02 4.33 30.65 0.13 -4.89 16 15 C 0.15 6.85 6.28 86.36 0.54 7.39 16 16 N -0.61 -32.04 2.99 -699.07 -2.09 -34.13 16 17 C -0.27 -15.36 9.59 84.03 0.81 -14.55 16 18 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 19 C -0.05 -2.72 4.91 84.86 0.42 -2.30 16 20 N -0.93 -56.36 11.19 21.65 0.24 -56.12 16 21 Si 0.97 45.98 29.59 68.60 2.03 48.01 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 C 0.19 9.67 5.08 86.36 0.44 10.11 16 26 C -0.12 -4.73 5.10 30.66 0.16 -4.57 16 27 C 0.10 2.87 5.29 86.33 0.46 3.33 16 28 C -0.12 -1.65 6.69 31.18 0.21 -1.45 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.39 7.35 -2.39 -0.02 0.38 16 32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.08 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.07 1.51 7.45 -2.39 -0.02 1.49 16 35 H 0.14 1.45 7.16 -2.39 -0.02 1.43 16 36 H 0.13 1.34 5.43 -2.39 -0.01 1.32 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 2.28 6.15 -2.39 -0.01 2.27 16 42 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.05 2.03 7.93 -2.38 -0.02 2.02 16 44 H 0.02 0.70 7.83 -2.39 -0.02 0.68 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.05 3.02 6.03 -2.39 -0.01 3.00 16 47 H 0.00 0.03 7.83 -2.38 -0.02 0.01 16 48 H 0.07 2.65 8.14 -2.38 -0.02 2.64 16 49 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 50 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.08 2.69 7.07 -2.39 -0.02 2.67 16 52 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 53 H 0.10 0.93 7.80 -2.39 -0.02 0.91 16 Total: -1.00 -73.41 394.98 3.56 -69.85 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.87 Total: 16.26 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.90 Total: 7.58 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.91 Total: -107.28 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.34 Total: -34.42 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -73.41 3.56 -69.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098583930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.124 kcal (2) G-P(sol) polarization free energy of solvation -73.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds