Wall clock time and date at job start Tue Mar 31 2020 21:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.50700 * 2 1 4 4 C 1.53297 * 109.51098 * 120.10059 * 2 1 3 5 5 N 1.47148 * 108.37367 * 172.32700 * 4 2 1 6 6 C 1.34778 * 120.98539 * 129.38217 * 5 4 2 7 7 O 1.21288 * 119.99899 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00296 * 0.02768 * 6 5 4 9 9 H 1.09000 * 115.54718 * 325.66522 * 8 6 5 10 10 C 1.52998 * 117.50219 * 111.37372 * 8 6 5 11 11 C 1.52991 * 117.49960 * 179.97438 * 8 6 5 12 12 C 1.53004 * 117.50088 * 359.97438 * 11 8 6 13 13 C 1.53000 * 117.49906 * 144.99703 * 11 8 6 14 14 C 1.47148 * 118.02675 * 309.40823 * 5 4 2 15 15 C 1.53253 * 108.41236 * 50.47372 * 14 5 4 16 16 C 1.52986 * 109.39797 * 67.82808 * 15 14 5 17 17 C 1.53192 * 109.34586 * 181.13306 * 16 15 14 18 18 N 1.46935 * 108.77577 * 305.42610 * 17 16 15 19 19 C 1.36933 * 120.64170 * 233.39903 * 18 17 16 20 20 H 1.08001 * 120.00041 * 152.67299 * 19 18 17 21 21 C 1.38815 * 120.00390 * 332.67878 * 19 18 17 22 22 N 1.31614 * 120.00396 * 159.36647 * 21 19 18 23 23 Si 1.86799 * 119.99773 * 339.35757 * 21 19 18 24 24 H 1.48496 * 109.46857 * 92.82637 * 23 21 19 25 25 H 1.48492 * 109.47338 * 212.82822 * 23 21 19 26 26 H 1.48504 * 109.47250 * 332.82987 * 23 21 19 27 27 C 1.46925 * 118.71348 * 53.67475 * 18 17 16 28 28 C 1.52999 * 109.36480 * 187.91672 * 15 14 5 29 29 O 1.42900 * 109.32175 * 307.85251 * 15 14 5 30 30 H 1.08993 * 109.47293 * 299.90589 * 1 2 3 31 31 H 1.09003 * 109.46915 * 59.90258 * 1 2 3 32 32 H 1.08996 * 109.46980 * 179.89378 * 1 2 3 33 33 H 1.08998 * 109.68345 * 52.60570 * 4 2 1 34 34 H 1.09007 * 109.68035 * 292.05264 * 4 2 1 35 35 H 1.09003 * 117.49633 * 214.98348 * 10 8 6 36 36 H 1.08999 * 117.49355 * 0.02562 * 10 8 6 37 37 H 1.08990 * 109.47070 * 60.00306 * 12 11 8 38 38 H 1.09005 * 109.47086 * 180.02562 * 12 11 8 39 39 H 1.08994 * 109.46753 * 299.99877 * 12 11 8 40 40 H 1.08994 * 109.47456 * 59.99804 * 13 11 8 41 41 H 1.09000 * 109.47434 * 179.97438 * 13 11 8 42 42 H 1.08998 * 109.47258 * 299.99517 * 13 11 8 43 43 H 1.09003 * 109.67655 * 290.74106 * 14 5 4 44 44 H 1.09005 * 109.67644 * 170.20117 * 14 5 4 45 45 H 1.08997 * 109.49091 * 61.16875 * 16 15 14 46 46 H 1.09000 * 109.50848 * 301.10375 * 16 15 14 47 47 H 1.09003 * 109.58758 * 185.63752 * 17 16 15 48 48 H 1.08998 * 109.59100 * 65.21623 * 17 16 15 49 49 H 0.96998 * 120.00290 * 179.97438 * 22 21 19 50 50 H 1.09007 * 109.58835 * 66.10415 * 27 18 17 51 51 H 1.08998 * 109.58979 * 186.52772 * 27 18 17 52 52 H 1.09002 * 109.48903 * 298.80226 * 28 15 14 53 53 H 1.09001 * 109.48956 * 58.87295 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7247 1.2501 5 7 3.5014 -0.8734 1.1349 6 6 4.3185 -0.4984 2.1391 7 8 5.5190 -0.6286 2.0248 8 6 3.7406 0.0826 3.4038 9 1 2.8465 0.6926 3.2751 10 6 3.8470 -0.7555 4.6793 11 6 4.7201 0.4883 4.5068 12 6 6.2115 0.2725 4.2417 13 6 4.3700 1.7196 5.3447 14 6 4.0423 -1.4432 -0.1093 15 6 3.4317 -0.6864 -1.2938 16 6 3.9556 0.7509 -1.3030 17 6 3.3227 1.5143 -2.4707 18 7 3.5745 0.7715 -3.7132 19 6 4.1525 1.3886 -4.7903 20 1 4.7268 0.8110 -5.4995 21 6 4.0005 2.7566 -4.9706 22 7 4.8482 3.4186 -5.7291 23 14 2.5926 3.6577 -4.1369 24 1 3.0523 4.1928 -2.8301 25 1 2.1423 4.7789 -5.0001 26 1 1.4641 2.7178 -3.9174 27 6 3.1884 -0.6446 -3.7796 28 6 3.8228 -1.3845 -2.5978 29 8 2.0085 -0.6761 -1.1653 30 1 -0.3633 0.5123 0.8908 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3633 -1.0276 -0.0019 33 1 1.5772 -1.7080 1.3206 34 1 1.8014 -0.1397 2.1379 35 1 3.0226 -0.6972 5.3901 36 1 4.3353 -1.7271 4.6038 37 1 6.5114 0.8463 3.3649 38 1 6.7860 0.6036 5.1069 39 1 6.3995 -0.7864 4.0647 40 1 3.4184 1.5563 5.8504 41 1 5.1508 1.8885 6.0863 42 1 4.2912 2.5910 4.6948 43 1 3.7800 -2.4992 -0.1738 44 1 5.1266 -1.3324 -0.1227 45 1 5.0393 0.7422 -1.4188 46 1 3.6939 1.2397 -0.3645 47 1 3.7671 2.5070 -2.5420 48 1 2.2484 1.6035 -2.3096 49 1 4.7418 4.3744 -5.8554 50 1 2.1031 -0.7304 -3.7244 51 1 3.5440 -1.0768 -4.7149 52 1 4.9077 -1.3762 -2.7035 53 1 3.4667 -2.4145 -2.5800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098586713.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:48 Heat of formation + Delta-G solvation = -42.527033 kcal Electronic energy + Delta-G solvation = -32040.914691 eV Core-core repulsion = 28106.564374 eV Total energy + Delta-G solvation = -3934.350318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.05983 -40.70005 -38.44162 -37.92900 -35.80742 -35.16774 -33.55021 -32.10995 -31.58580 -30.59013 -28.87981 -28.36126 -27.31697 -26.19309 -24.66361 -24.39872 -23.22863 -22.12412 -20.83839 -20.52137 -19.53487 -18.98808 -18.44158 -17.46627 -17.24632 -16.87757 -16.43975 -16.11530 -15.85455 -15.71212 -15.49414 -15.30379 -15.16651 -14.69390 -14.63830 -14.38292 -14.24715 -14.13829 -13.70662 -13.61509 -13.59330 -13.36972 -13.19833 -13.07987 -12.97284 -12.79945 -12.72647 -12.59847 -12.47655 -12.28992 -12.19426 -12.13522 -11.87500 -11.67631 -11.47047 -11.34383 -11.19388 -10.91280 -10.78867 -10.69975 -10.47467 -9.53992 -8.95354 -8.20385 -5.51357 1.23025 1.34581 1.42990 1.44858 1.81069 2.37414 2.62146 2.75013 3.01264 3.27862 3.38243 3.58913 3.62537 3.68495 3.77470 3.79532 3.90674 3.99267 4.11609 4.15774 4.18800 4.22859 4.35617 4.39585 4.49875 4.57468 4.60282 4.63258 4.67364 4.71679 4.76621 4.79755 4.83178 4.84081 4.92506 4.95113 4.98080 5.03862 5.05050 5.06532 5.07892 5.10032 5.11172 5.27632 5.31448 5.35879 5.43342 5.50317 5.83381 6.09674 6.28228 6.31939 6.88107 7.11184 7.58873 8.01260 8.99693 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003723 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.354519 B = 7518.963437 C = 7882.741753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 H 0.047 0.953 4 C 0.085 3.915 5 N -0.611 5.611 6 C 0.536 3.464 7 O -0.573 6.573 8 C -0.197 4.197 9 H 0.145 0.855 10 C -0.123 4.123 11 C -0.105 4.105 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.098 3.902 15 C 0.127 3.873 16 C -0.142 4.142 17 C 0.138 3.862 18 N -0.618 5.618 19 C -0.248 4.248 20 H 0.056 0.944 21 C -0.034 4.034 22 N -0.956 5.956 23 Si 0.944 3.056 24 H -0.281 1.281 25 H -0.307 1.307 26 H -0.261 1.261 27 C 0.151 3.849 28 C -0.112 4.112 29 O -0.371 6.371 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.031 0.969 49 H 0.262 0.738 50 H 0.036 0.964 51 H 0.059 0.941 52 H 0.070 0.930 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -10.278 26.016 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 H 0.065 0.935 4 C -0.037 4.037 5 N -0.343 5.343 6 C 0.326 3.674 7 O -0.452 6.452 8 C -0.218 4.218 9 H 0.163 0.837 10 C -0.160 4.160 11 C -0.105 4.105 12 C -0.157 4.157 13 C -0.170 4.170 14 C -0.025 4.025 15 C 0.086 3.914 16 C -0.181 4.181 17 C 0.013 3.987 18 N -0.343 5.343 19 C -0.378 4.378 20 H 0.074 0.926 21 C -0.229 4.229 22 N -0.603 5.603 23 Si 0.773 3.227 24 H -0.208 1.208 25 H -0.235 1.235 26 H -0.186 1.186 27 C 0.027 3.973 28 C -0.151 4.151 29 O -0.290 6.290 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.089 0.911 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.310 -10.324 25.742 29.256 hybrid contribution 0.171 1.092 -0.587 1.251 sum -9.138 -9.233 25.155 28.311 Atomic orbital electron populations 1.21719 0.90292 1.03926 1.03393 1.22720 0.96963 0.95250 0.85210 0.93456 1.22690 0.78314 1.03164 0.99517 1.48194 1.07993 1.62449 1.15654 1.20339 0.85824 0.76626 0.84579 1.90697 1.16333 1.56590 1.81608 1.22435 1.04033 1.07346 0.87996 0.83719 1.23291 1.02554 0.94826 0.95354 1.21683 0.92738 0.98001 0.98106 1.21258 0.93064 1.01235 1.00133 1.21402 1.02808 0.94213 0.98552 1.22177 0.99662 0.97845 0.82788 1.21509 0.81387 0.93509 0.94960 1.22358 1.00361 0.97371 0.98037 1.21119 0.97036 0.94438 0.86145 1.44479 1.71609 1.08541 1.09658 1.18923 1.23851 0.91867 1.03115 0.92650 1.25875 1.00331 0.97591 0.99089 1.69958 1.37357 1.08326 1.44623 0.85940 0.82085 0.77766 0.76894 1.20841 1.23543 1.18585 1.20966 0.97049 0.82506 0.96807 1.21898 1.00865 0.99768 0.92560 1.87991 1.19937 1.76804 1.44287 0.88070 0.93159 0.90523 0.88674 0.86079 0.84585 0.89290 0.94299 0.91765 0.93509 0.90110 0.91069 0.92535 0.89133 0.90216 0.92857 0.91745 0.94102 0.95086 0.92951 0.94550 0.92277 0.91132 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.57 71.98 0.69 -1.52 16 2 C 0.06 1.25 3.01 30.70 0.09 1.34 16 3 H 0.05 1.22 6.29 -2.39 -0.02 1.21 16 4 C 0.09 1.41 5.84 86.36 0.50 1.91 16 5 N -0.61 -14.28 2.52 -817.42 -2.06 -16.35 16 6 C 0.54 13.64 7.48 87.66 0.66 14.30 16 7 O -0.57 -19.06 12.57 -3.05 -0.04 -19.10 16 8 C -0.20 -3.38 4.90 -11.54 -0.06 -3.43 16 9 H 0.15 1.77 6.55 -2.39 -0.02 1.76 16 10 C -0.12 -1.58 9.52 30.58 0.29 -1.29 16 11 C -0.10 -1.76 2.70 -52.20 -0.14 -1.90 16 12 C -0.10 -2.22 8.09 71.98 0.58 -1.64 16 13 C -0.11 -1.34 9.85 71.98 0.71 -0.63 16 14 C 0.10 2.65 5.29 86.34 0.46 3.10 16 15 C 0.13 3.92 0.68 -10.71 -0.01 3.91 16 16 C -0.14 -5.32 4.33 30.65 0.13 -5.19 16 17 C 0.14 6.22 3.97 86.36 0.34 6.56 16 18 N -0.62 -30.39 2.77 -699.08 -1.94 -32.33 16 19 C -0.25 -14.57 10.04 84.03 0.84 -13.73 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 21 C -0.03 -2.07 5.23 84.86 0.44 -1.62 16 22 N -0.96 -61.82 13.97 21.65 0.30 -61.52 16 23 Si 0.94 48.40 24.34 68.60 1.67 50.07 16 24 H -0.28 -13.82 6.62 99.48 0.66 -13.17 16 25 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 26 H -0.26 -12.90 6.64 99.48 0.66 -12.24 16 27 C 0.15 6.04 6.28 86.36 0.54 6.58 16 28 C -0.11 -3.58 5.10 30.66 0.16 -3.42 16 29 O -0.37 -10.77 8.64 -148.98 -1.29 -12.06 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.12 1.28 5.59 -2.38 -0.01 1.27 16 35 H 0.14 0.89 8.05 -2.39 -0.02 0.87 16 36 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 37 H 0.04 1.08 7.25 -2.39 -0.02 1.06 16 38 H 0.06 1.16 7.93 -2.38 -0.02 1.14 16 39 H 0.05 1.17 7.01 -2.39 -0.02 1.16 16 40 H 0.08 0.61 7.90 -2.39 -0.02 0.59 16 41 H 0.07 0.77 7.92 -2.39 -0.02 0.75 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.49 7.07 -2.38 -0.02 2.48 16 45 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.06 2.25 6.16 -2.39 -0.01 2.23 16 47 H 0.04 2.07 4.51 -2.39 -0.01 2.06 16 48 H 0.03 1.39 6.75 -2.39 -0.02 1.37 16 49 H 0.26 16.05 8.31 -92.71 -0.77 15.27 16 50 H 0.04 1.43 7.82 -2.38 -0.02 1.42 16 51 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 52 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 53 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -76.09 389.48 3.67 -72.42 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.79 Total: 15.52 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.24 Total: 3.34 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.70 Total: -110.19 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.33 Total: -31.16 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 1.67 Total: 50.07 kcal Total: -76.09 3.67 -72.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098586713.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.891 kcal (2) G-P(sol) polarization free energy of solvation -76.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds