Wall clock time and date at job start Tue Mar 31 2020 21:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.54938 * 2 1 4 4 C 1.53301 * 109.51299 * 120.12131 * 2 1 3 5 5 N 1.47152 * 108.37486 * 172.27980 * 4 2 1 6 6 C 1.34768 * 120.98882 * 129.38798 * 5 4 2 7 7 O 1.21276 * 120.00502 * 180.02562 * 6 5 4 8 8 C 1.50711 * 119.99851 * 0.02562 * 6 5 4 9 9 H 1.08999 * 115.54898 * 34.41548 * 8 6 5 10 10 C 1.53000 * 117.49695 * 248.74588 * 8 6 5 11 11 C 1.52999 * 117.49669 * 180.08693 * 8 6 5 12 12 C 1.53002 * 117.49747 * 214.97868 * 11 8 6 13 13 C 1.52996 * 117.50265 * 359.97438 * 11 8 6 14 14 C 1.47157 * 118.02644 * 309.40868 * 5 4 2 15 15 C 1.53258 * 108.40591 * 50.47430 * 14 5 4 16 16 C 1.53004 * 109.36135 * 187.91594 * 15 14 5 17 17 C 1.53183 * 109.34577 * 178.84527 * 16 15 14 18 18 N 1.46924 * 108.77991 * 54.57507 * 17 16 15 19 19 C 1.36934 * 120.64300 * 126.30444 * 18 17 16 20 20 H 1.07993 * 120.00089 * 207.68773 * 19 18 17 21 21 C 1.38818 * 119.99963 * 27.69299 * 19 18 17 22 22 N 1.31614 * 119.99890 * 17.37628 * 21 19 18 23 23 Si 1.86799 * 119.99868 * 197.37844 * 21 19 18 24 24 H 1.48504 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47073 * 119.99770 * 23 21 19 26 26 H 1.48506 * 109.46766 * 240.00139 * 23 21 19 27 27 C 1.46936 * 118.71532 * 306.32796 * 18 17 16 28 28 C 1.52981 * 109.40154 * 67.82711 * 15 14 5 29 29 O 1.42894 * 109.32461 * 307.84570 * 15 14 5 30 30 H 1.08993 * 109.47473 * 299.87598 * 1 2 3 31 31 H 1.09005 * 109.47042 * 59.87682 * 1 2 3 32 32 H 1.09005 * 109.46568 * 179.87576 * 1 2 3 33 33 H 1.08999 * 109.67947 * 52.55722 * 4 2 1 34 34 H 1.08998 * 109.68551 * 292.00223 * 4 2 1 35 35 H 1.09004 * 117.49907 * 0.02562 * 10 8 6 36 36 H 1.09000 * 117.49377 * 145.02003 * 10 8 6 37 37 H 1.08997 * 109.46744 * 60.00134 * 12 11 8 38 38 H 1.08994 * 109.47312 * 180.02562 * 12 11 8 39 39 H 1.09004 * 109.47223 * 300.00051 * 12 11 8 40 40 H 1.09005 * 109.47034 * 59.99541 * 13 11 8 41 41 H 1.08995 * 109.47446 * 179.97438 * 13 11 8 42 42 H 1.09000 * 109.47311 * 300.00294 * 13 11 8 43 43 H 1.09002 * 109.67645 * 290.75052 * 14 5 4 44 44 H 1.08992 * 109.70700 * 170.22178 * 14 5 4 45 45 H 1.08995 * 109.49413 * 58.87579 * 16 15 14 46 46 H 1.09007 * 109.48487 * 298.80316 * 16 15 14 47 47 H 1.08997 * 109.58542 * 294.78431 * 17 16 15 48 48 H 1.09007 * 109.58734 * 174.36369 * 17 16 15 49 49 H 0.96997 * 119.99961 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.58410 * 173.45381 * 27 18 17 51 51 H 1.09002 * 109.58430 * 293.73797 * 27 18 17 52 52 H 1.09002 * 109.49482 * 61.16439 * 28 15 14 53 53 H 1.08996 * 109.51065 * 301.10726 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0421 -0.7251 1.2498 5 7 3.5014 -0.8748 1.1341 6 6 4.3191 -0.5006 2.1378 7 8 5.5193 -0.6316 2.0232 8 6 3.7420 0.0806 3.4029 9 1 2.7795 -0.3274 3.7114 10 6 4.0041 1.5617 3.6835 11 6 4.7225 0.4879 4.5046 12 6 4.2767 0.2917 5.9550 13 6 6.2137 0.2734 4.2379 14 6 4.0414 -1.4449 -0.1105 15 6 3.4307 -0.6875 -1.2946 16 6 3.8208 -1.3856 -2.5989 17 6 3.1865 -0.6451 -3.7803 18 7 3.5734 0.7707 -3.7139 19 6 4.1568 1.3861 -4.7891 20 1 4.8238 2.2216 -4.6367 21 6 3.8909 0.9358 -6.0750 22 7 2.8456 0.1685 -6.3005 23 14 5.0166 1.4189 -7.4852 24 1 6.1115 2.2809 -6.9716 25 1 5.5948 0.1962 -8.0982 26 1 4.2382 2.1644 -8.5068 27 6 3.3226 1.5135 -2.4711 28 6 3.9554 0.7495 -1.3038 29 8 2.0076 -0.6764 -1.1655 30 1 -0.3634 0.5119 0.8910 31 1 -0.3633 0.5158 -0.8889 32 1 -0.3633 -1.0277 -0.0022 33 1 1.5765 -1.7082 1.3205 34 1 1.8023 -0.1402 2.1378 35 1 4.5935 2.1157 2.9529 36 1 3.2141 2.1278 4.1770 37 1 4.0675 -0.7634 6.1312 38 1 5.0689 0.6225 6.6265 39 1 3.3758 0.8767 6.1405 40 1 6.5120 0.8469 3.3603 41 1 6.7889 0.6063 5.1018 42 1 6.4026 -0.7855 4.0613 43 1 3.7782 -2.5007 -0.1751 44 1 5.1257 -1.3354 -0.1247 45 1 3.4640 -2.4154 -2.5811 46 1 4.9057 -1.3780 -2.7050 47 1 2.1013 -0.7303 -3.7248 48 1 3.5416 -1.0774 -4.7159 49 1 2.6600 -0.1464 -7.1990 50 1 3.7677 2.5059 -2.5425 51 1 2.2484 1.6055 -2.3109 52 1 5.0392 0.7402 -1.4201 53 1 3.6947 1.2383 -0.3652 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098589715.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:56 Heat of formation + Delta-G solvation = -45.863718 kcal Electronic energy + Delta-G solvation = -31821.851772 eV Core-core repulsion = 27887.356765 eV Total energy + Delta-G solvation = -3934.495007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.00428 -40.61909 -38.29300 -37.83198 -35.77164 -35.08152 -33.33779 -31.71209 -31.36784 -30.50237 -28.77212 -28.32483 -27.29948 -26.29146 -24.59259 -24.04237 -23.03881 -22.15534 -20.77217 -20.38164 -19.49957 -18.90107 -18.35781 -17.18625 -17.00868 -16.74134 -16.56336 -16.08703 -15.86447 -15.39340 -15.25862 -15.17234 -14.97783 -14.89116 -14.62398 -14.34722 -14.14668 -13.86185 -13.53097 -13.39388 -13.27035 -13.21422 -13.06704 -12.98271 -12.83650 -12.77865 -12.67800 -12.63284 -12.57967 -12.23253 -12.12004 -12.06621 -11.87065 -11.75016 -11.42586 -11.24650 -11.17299 -10.79226 -10.78070 -10.55259 -10.43128 -9.50701 -8.69171 -7.88388 -5.33755 1.44277 1.44976 1.46172 1.56974 1.81245 2.49471 2.70342 2.77590 3.25544 3.38892 3.57185 3.67404 3.68382 3.77605 3.82709 3.88840 3.92126 4.09130 4.14362 4.19802 4.23315 4.35824 4.42037 4.47348 4.58482 4.65691 4.67774 4.68843 4.74286 4.83432 4.84187 4.85171 4.87740 4.94277 4.97126 5.03781 5.07351 5.08604 5.10272 5.12791 5.13408 5.24903 5.30661 5.34164 5.39677 5.44220 5.53543 5.62633 5.77462 6.34487 6.37291 6.39481 7.12774 7.13531 7.84186 8.37488 9.18014 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018366 B = 0.003159 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.212689 B = 8861.876615 C = 9538.740404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.061 3.939 3 H 0.055 0.945 4 C 0.084 3.916 5 N -0.609 5.609 6 C 0.537 3.463 7 O -0.573 6.573 8 C -0.192 4.192 9 H 0.152 0.848 10 C -0.137 4.137 11 C -0.099 4.099 12 C -0.111 4.111 13 C -0.100 4.100 14 C 0.098 3.902 15 C 0.129 3.871 16 C -0.119 4.119 17 C 0.191 3.809 18 N -0.608 5.608 19 C -0.265 4.265 20 H 0.063 0.937 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.155 3.845 28 C -0.135 4.135 29 O -0.377 6.377 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.000 1.000 48 H 0.053 0.947 49 H 0.251 0.749 50 H 0.046 0.954 51 H 0.015 0.985 52 H 0.053 0.947 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 -1.265 25.863 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.003 3.997 3 H 0.073 0.927 4 C -0.038 4.038 5 N -0.341 5.341 6 C 0.327 3.673 7 O -0.453 6.453 8 C -0.213 4.213 9 H 0.169 0.831 10 C -0.174 4.174 11 C -0.099 4.099 12 C -0.167 4.167 13 C -0.157 4.157 14 C -0.025 4.025 15 C 0.089 3.911 16 C -0.158 4.158 17 C 0.065 3.935 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.193 1.193 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.029 3.971 28 C -0.174 4.174 29 O -0.297 6.297 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.018 0.982 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.032 0.968 52 H 0.072 0.928 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.104 -1.470 25.529 25.759 hybrid contribution 0.707 0.172 -1.550 1.713 sum -2.397 -1.298 23.978 24.133 Atomic orbital electron populations 1.21712 0.90686 1.03525 1.03383 1.22685 0.96695 0.95477 0.84877 0.92694 1.22691 0.78350 1.02886 0.99873 1.48184 1.08002 1.62456 1.15488 1.20366 0.85794 0.76687 0.84416 1.90686 1.16376 1.56556 1.81641 1.22444 1.03160 1.01142 0.94537 0.83075 1.23318 1.03357 0.88671 1.02043 1.21712 0.93257 1.01660 0.93299 1.21395 1.02185 1.02527 0.90642 1.21265 0.92965 1.01265 1.00250 1.22150 0.99690 0.97530 0.83113 1.21460 0.81271 0.94365 0.94041 1.22018 1.00493 0.99208 0.94082 1.20379 0.94639 0.83239 0.95216 1.44290 1.71175 1.06849 1.10837 1.19511 1.19599 1.14769 0.85649 0.91965 1.25782 0.98028 1.00977 0.99627 1.70203 1.27013 1.39993 1.20554 0.85224 0.78668 0.77409 0.79240 1.19333 1.21464 1.21730 1.20807 0.96255 0.93936 0.86100 1.22295 1.00071 0.96532 0.98544 1.88047 1.20260 1.76967 1.44400 0.87706 0.93328 0.91250 0.89354 0.85664 0.90151 0.84677 0.91765 0.91121 0.90352 0.94212 0.91693 0.93538 0.90181 0.90023 0.90613 0.91479 0.98170 0.92833 0.94029 0.93575 0.96756 0.92839 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 2 C 0.06 1.47 3.02 30.70 0.09 1.56 16 3 H 0.06 1.44 6.29 -2.38 -0.01 1.43 16 4 C 0.08 1.54 5.77 86.36 0.50 2.04 16 5 N -0.61 -15.13 2.52 -817.42 -2.06 -17.19 16 6 C 0.54 13.84 7.48 87.66 0.66 14.49 16 7 O -0.57 -19.12 12.57 -3.02 -0.04 -19.16 16 8 C -0.19 -3.26 4.67 -11.54 -0.05 -3.31 16 9 H 0.15 1.63 6.91 -2.39 -0.02 1.61 16 10 C -0.14 -2.04 9.53 30.62 0.29 -1.75 16 11 C -0.10 -1.61 2.70 -52.16 -0.14 -1.75 16 12 C -0.11 -1.12 9.85 71.98 0.71 -0.41 16 13 C -0.10 -2.17 8.09 71.98 0.58 -1.59 16 14 C 0.10 2.94 5.29 86.34 0.46 3.40 16 15 C 0.13 4.46 0.68 -10.71 -0.01 4.45 16 16 C -0.12 -4.71 5.10 30.66 0.16 -4.56 16 17 C 0.19 9.66 5.08 86.36 0.44 10.10 16 18 N -0.61 -32.08 2.99 -699.09 -2.09 -34.17 16 19 C -0.27 -15.18 9.59 84.04 0.81 -14.37 16 20 H 0.06 3.51 7.89 -2.91 -0.02 3.48 16 21 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 22 N -0.93 -56.43 11.19 21.65 0.24 -56.19 16 23 Si 0.97 46.03 29.59 68.60 2.03 48.06 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 C 0.15 6.87 6.28 86.36 0.54 7.42 16 28 C -0.14 -5.00 4.33 30.65 0.13 -4.87 16 29 O -0.38 -12.76 8.65 -148.98 -1.29 -14.05 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.43 5.83 -2.39 -0.01 1.42 16 35 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 36 H 0.14 1.18 8.05 -2.39 -0.02 1.16 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 39 H 0.08 0.51 7.90 -2.38 -0.02 0.49 16 40 H 0.04 1.04 7.02 -2.38 -0.02 1.03 16 41 H 0.06 1.12 7.92 -2.39 -0.02 1.11 16 42 H 0.05 1.18 7.26 -2.39 -0.02 1.16 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 2.72 7.08 -2.39 -0.02 2.70 16 45 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 46 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 47 H 0.00 0.01 7.82 -2.39 -0.02 -0.01 16 48 H 0.05 3.04 6.03 -2.38 -0.01 3.03 16 49 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 51 H 0.01 0.66 7.83 -2.39 -0.02 0.64 16 52 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 53 H 0.07 2.27 6.16 -2.39 -0.01 2.26 16 Total: -1.00 -72.74 396.24 3.93 -68.81 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.88 Total: 17.28 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.26 Total: 6.60 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.91 Total: -107.55 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.33 Total: -33.20 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.74 3.93 -68.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098589715.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.946 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds