Wall clock time and date at job start Tue Mar 31 2020 21:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.51360 * 2 1 4 4 C 1.53297 * 109.50932 * 239.89614 * 2 1 3 5 5 N 1.47154 * 108.37388 * 187.72447 * 4 2 1 6 6 C 1.34771 * 120.98284 * 230.61984 * 5 4 2 7 7 O 1.21293 * 120.00160 * 179.97438 * 6 5 4 8 8 C 1.50704 * 120.00410 * 359.97392 * 6 5 4 9 9 H 1.08993 * 115.54887 * 34.41384 * 8 6 5 10 10 C 1.53003 * 117.49713 * 248.74605 * 8 6 5 11 11 C 1.53000 * 117.50000 * 180.08854 * 8 6 5 12 12 C 1.52998 * 117.49781 * 214.98087 * 11 8 6 13 13 C 1.53002 * 117.49985 * 359.97381 * 11 8 6 14 14 C 1.47150 * 118.02461 * 50.59246 * 5 4 2 15 15 C 1.53248 * 108.41386 * 309.52768 * 14 5 4 16 16 C 1.52994 * 109.36443 * 172.07778 * 15 14 5 17 17 C 1.53191 * 109.34548 * 181.17344 * 16 15 14 18 18 N 1.46932 * 108.76540 * 305.40610 * 17 16 15 19 19 C 1.36936 * 120.63997 * 233.67886 * 18 17 16 20 20 H 1.08005 * 119.99455 * 152.66274 * 19 18 17 21 21 C 1.38804 * 120.00768 * 332.94077 * 19 18 17 22 22 N 1.31615 * 120.00542 * 159.00078 * 21 19 18 23 23 Si 1.86807 * 119.99591 * 339.00757 * 21 19 18 24 24 H 1.48496 * 109.47191 * 93.12971 * 23 21 19 25 25 H 1.48495 * 109.46837 * 213.12872 * 23 21 19 26 26 H 1.48497 * 109.47165 * 333.12748 * 23 21 19 27 27 C 1.46926 * 118.71261 * 53.95776 * 18 17 16 28 28 C 1.52988 * 109.40381 * 292.16717 * 15 14 5 29 29 O 1.42901 * 109.32510 * 52.14691 * 15 14 5 30 30 H 1.08991 * 109.47438 * 180.10768 * 1 2 3 31 31 H 1.09005 * 109.46749 * 300.10048 * 1 2 3 32 32 H 1.08995 * 109.47472 * 60.10067 * 1 2 3 33 33 H 1.09001 * 109.68735 * 68.00060 * 4 2 1 34 34 H 1.09003 * 109.68717 * 307.44242 * 4 2 1 35 35 H 1.09001 * 117.50275 * 0.02562 * 10 8 6 36 36 H 1.08998 * 117.49235 * 145.01721 * 10 8 6 37 37 H 1.08996 * 109.47426 * 59.99688 * 12 11 8 38 38 H 1.09002 * 109.46991 * 180.02562 * 12 11 8 39 39 H 1.09004 * 109.47127 * 299.99685 * 12 11 8 40 40 H 1.08999 * 109.47016 * 59.99972 * 13 11 8 41 41 H 1.08996 * 109.47486 * 179.97438 * 13 11 8 42 42 H 1.09003 * 109.47556 * 300.00529 * 13 11 8 43 43 H 1.09006 * 109.66880 * 189.79888 * 14 5 4 44 44 H 1.08991 * 109.70817 * 69.28201 * 14 5 4 45 45 H 1.08993 * 109.49520 * 61.20644 * 16 15 14 46 46 H 1.09007 * 109.51087 * 301.14248 * 16 15 14 47 47 H 1.09009 * 109.58551 * 185.62611 * 17 16 15 48 48 H 1.09000 * 109.71053 * 65.26772 * 17 16 15 49 49 H 0.97001 * 120.00632 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.58985 * 65.84505 * 27 18 17 51 51 H 1.09005 * 109.58606 * 186.26735 * 27 18 17 52 52 H 1.09007 * 109.48664 * 298.82723 * 28 15 14 53 53 H 1.08993 * 109.48926 * 58.87452 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8746 -1.1343 6 6 4.3189 -0.5000 -2.1380 7 8 5.5193 -0.6311 -2.0235 8 6 3.7419 0.0819 -3.4028 9 1 2.8491 0.6936 -3.2742 10 6 3.8457 -0.7573 -4.6780 11 6 4.7222 0.4858 -4.5060 12 6 4.3737 1.7173 -5.3444 13 6 6.2132 0.2687 -4.2404 14 6 4.0412 -1.4451 0.1100 15 6 3.4306 -0.6883 1.2944 16 6 3.8206 -1.3871 2.5983 17 6 3.1859 -0.6472 3.7801 18 7 3.5732 0.7686 3.7144 19 6 4.1562 1.3833 4.7902 20 1 4.8191 2.2225 4.6388 21 6 3.8999 0.9244 6.0749 22 7 4.7334 1.2073 7.0534 23 14 2.3718 -0.0948 6.4150 24 1 2.7046 -1.5378 6.3049 25 1 1.8775 0.1961 7.7847 26 1 1.3184 0.2471 5.4257 27 6 3.3172 1.5137 2.4742 28 6 3.9556 0.7487 1.3044 29 8 2.0075 -0.6768 1.1653 30 1 -0.3634 -1.0276 0.0019 31 1 -0.3633 0.5154 0.8891 32 1 -0.3634 0.5122 -0.8908 33 1 1.8022 -0.1395 -2.1379 34 1 1.5765 -1.7078 -1.3211 35 1 4.3309 -1.7304 -4.6020 36 1 3.0212 -0.6973 -5.3883 37 1 4.2960 2.5890 -4.6948 38 1 5.1548 1.8848 -6.0860 39 1 3.4219 1.5551 -5.8502 40 1 6.4002 -0.7903 -4.0626 41 1 6.7882 0.5985 -5.1057 42 1 6.5136 0.8427 -3.3638 43 1 5.1256 -1.3351 0.1238 44 1 3.7787 -2.5010 0.1744 45 1 4.9053 -1.3796 2.7047 46 1 3.4640 -2.4170 2.5802 47 1 3.5408 -1.0801 4.7154 48 1 2.1005 -0.7320 3.7268 49 1 4.5541 0.8869 7.9513 50 1 2.2424 1.6001 2.3150 51 1 3.7589 2.5076 2.5472 52 1 5.0394 0.7391 1.4209 53 1 3.6950 1.2376 0.3658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098589717.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:00 Heat of formation + Delta-G solvation = -42.138124 kcal Electronic energy + Delta-G solvation = -31882.932577 eV Core-core repulsion = 27948.599124 eV Total energy + Delta-G solvation = -3934.333453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.04250 -40.67890 -38.43378 -37.91795 -35.79681 -35.11458 -33.58800 -32.05426 -31.58104 -30.57393 -28.86410 -28.33796 -27.29965 -26.17170 -24.90928 -24.14118 -23.06163 -22.32278 -20.86933 -20.43516 -19.52304 -18.96343 -18.41797 -17.45301 -17.15542 -16.93443 -16.41259 -16.10668 -15.91646 -15.56038 -15.54508 -15.28964 -15.13659 -14.73317 -14.59720 -14.36011 -14.21194 -14.09527 -13.71444 -13.64618 -13.53890 -13.34458 -13.23537 -13.03805 -12.89288 -12.79122 -12.71023 -12.58003 -12.52445 -12.32943 -12.14245 -12.11848 -11.78279 -11.60765 -11.54631 -11.34472 -11.17930 -10.90672 -10.74484 -10.68237 -10.45267 -9.52858 -8.94944 -8.18788 -5.50530 1.28920 1.39803 1.44549 1.50697 1.81073 2.40133 2.63299 2.76553 3.04058 3.27650 3.39416 3.59268 3.64398 3.71426 3.77350 3.80632 3.92327 4.00765 4.13709 4.18142 4.20935 4.24462 4.38062 4.45600 4.47110 4.56859 4.60790 4.62313 4.68573 4.75510 4.77563 4.82088 4.84850 4.86813 4.89063 4.94766 4.98184 5.01375 5.06715 5.09071 5.09930 5.12120 5.13819 5.27082 5.33918 5.35379 5.41321 5.52171 5.83321 6.10103 6.31020 6.33952 6.88867 7.12624 7.59790 8.01605 9.01221 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.003299 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.446692 B = 8486.210468 C = 9049.136807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.058 0.942 4 C 0.084 3.916 5 N -0.609 5.609 6 C 0.537 3.463 7 O -0.573 6.573 8 C -0.195 4.195 9 H 0.148 0.852 10 C -0.127 4.127 11 C -0.104 4.104 12 C -0.112 4.112 13 C -0.100 4.100 14 C 0.098 3.902 15 C 0.128 3.872 16 C -0.115 4.115 17 C 0.132 3.868 18 N -0.618 5.618 19 C -0.251 4.251 20 H 0.049 0.951 21 C -0.033 4.033 22 N -0.957 5.957 23 Si 0.948 3.052 24 H -0.273 1.273 25 H -0.309 1.309 26 H -0.263 1.263 27 C 0.156 3.844 28 C -0.139 4.139 29 O -0.375 6.375 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.036 0.964 49 H 0.262 0.738 50 H 0.035 0.965 51 H 0.049 0.951 52 H 0.052 0.948 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.691 -5.010 -28.997 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 H 0.076 0.924 4 C -0.038 4.038 5 N -0.341 5.341 6 C 0.327 3.673 7 O -0.453 6.453 8 C -0.215 4.215 9 H 0.166 0.834 10 C -0.164 4.164 11 C -0.104 4.104 12 C -0.169 4.169 13 C -0.157 4.157 14 C -0.025 4.025 15 C 0.088 3.912 16 C -0.154 4.154 17 C 0.007 3.993 18 N -0.342 5.342 19 C -0.381 4.381 20 H 0.067 0.933 21 C -0.228 4.228 22 N -0.603 5.603 23 Si 0.777 3.223 24 H -0.200 1.200 25 H -0.238 1.238 26 H -0.188 1.188 27 C 0.031 3.969 28 C -0.179 4.179 29 O -0.295 6.295 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.142 0.858 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.067 0.933 52 H 0.070 0.930 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.149 -5.163 -28.663 30.527 hybrid contribution 0.125 -0.126 1.265 1.278 sum -9.024 -5.289 -27.397 29.326 Atomic orbital electron populations 1.21720 0.90478 1.03634 1.03536 1.22734 0.96795 0.95587 0.84794 0.92389 1.22710 0.78250 1.03054 0.99818 1.48178 1.08013 1.62395 1.15534 1.20350 0.85788 0.76625 0.84523 1.90701 1.16399 1.56618 1.81563 1.22436 1.04072 1.07191 0.87832 0.83442 1.23309 1.02648 0.94845 0.95587 1.21704 0.92669 0.97945 0.98114 1.21401 1.02758 0.94212 0.98551 1.21260 0.93106 1.01164 1.00197 1.22137 0.99708 0.97662 0.83006 1.21443 0.81481 0.94285 0.94026 1.21906 1.00922 0.99543 0.93060 1.21217 0.97081 0.84014 0.96944 1.44451 1.71624 1.06247 1.11924 1.18853 1.19717 1.14290 0.85218 0.93338 1.25879 1.00653 1.01023 0.95203 1.69968 1.37288 1.51141 1.01870 0.85880 0.81991 0.78680 0.75720 1.19969 1.23822 1.18773 1.20970 0.97234 0.93939 0.84759 1.22405 1.00191 0.96562 0.98701 1.88009 1.19917 1.77044 1.44515 0.91163 0.92955 0.87872 0.85795 0.89223 0.89508 0.84615 0.92262 0.91160 0.90166 0.93709 0.91803 0.94085 0.90143 0.89775 0.91058 0.89254 0.93310 0.94612 0.92867 0.94712 0.93256 0.92958 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.57 71.98 0.69 -1.39 16 2 C 0.06 1.21 3.01 30.69 0.09 1.30 16 3 H 0.06 1.30 6.29 -2.39 -0.02 1.28 16 4 C 0.08 1.31 5.84 86.35 0.50 1.81 16 5 N -0.61 -13.76 2.52 -817.42 -2.06 -15.82 16 6 C 0.54 13.05 7.48 87.66 0.66 13.71 16 7 O -0.57 -18.53 12.57 -3.07 -0.04 -18.57 16 8 C -0.19 -3.07 4.90 -11.54 -0.06 -3.13 16 9 H 0.15 1.54 6.55 -2.39 -0.02 1.52 16 10 C -0.13 -1.54 9.53 30.62 0.29 -1.25 16 11 C -0.10 -1.62 2.70 -52.16 -0.14 -1.76 16 12 C -0.11 -1.17 9.85 71.98 0.71 -0.46 16 13 C -0.10 -2.12 8.09 71.98 0.58 -1.54 16 14 C 0.10 2.67 5.29 86.34 0.46 3.12 16 15 C 0.13 3.97 0.68 -10.72 -0.01 3.96 16 16 C -0.11 -4.07 5.10 30.66 0.16 -3.91 16 17 C 0.13 5.85 3.97 86.36 0.34 6.19 16 18 N -0.62 -30.43 2.77 -698.15 -1.93 -32.36 16 19 C -0.25 -14.82 10.03 84.03 0.84 -13.98 16 20 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 21 C -0.03 -1.97 5.23 84.86 0.44 -1.53 16 22 N -0.96 -61.57 13.97 21.65 0.30 -61.27 16 23 Si 0.95 48.03 24.35 68.60 1.67 49.70 16 24 H -0.27 -13.02 6.62 99.48 0.66 -12.37 16 25 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 26 H -0.26 -12.92 6.64 99.48 0.66 -12.26 16 27 C 0.16 6.40 6.31 86.52 0.55 6.95 16 28 C -0.14 -4.81 4.35 30.81 0.13 -4.67 16 29 O -0.38 -10.91 8.64 -148.98 -1.29 -12.20 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.12 1.14 5.60 -2.39 -0.01 1.12 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.30 8.05 -2.39 -0.02 1.28 16 36 H 0.14 0.80 8.05 -2.39 -0.02 0.78 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.68 7.92 -2.39 -0.02 0.66 16 39 H 0.08 0.50 7.90 -2.38 -0.02 0.49 16 40 H 0.04 1.09 7.02 -2.39 -0.02 1.08 16 41 H 0.06 1.09 7.92 -2.39 -0.02 1.08 16 42 H 0.04 1.08 7.26 -2.39 -0.02 1.06 16 43 H 0.08 2.53 7.07 -2.38 -0.02 2.51 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 46 H 0.09 2.68 8.14 -2.38 -0.02 2.67 16 47 H 0.05 2.37 4.48 -2.38 -0.01 2.35 16 48 H 0.04 1.58 6.77 -2.39 -0.02 1.57 16 49 H 0.26 15.99 8.31 -92.71 -0.77 15.21 16 50 H 0.03 1.38 7.82 -2.39 -0.02 1.36 16 51 H 0.05 2.09 7.93 -2.38 -0.02 2.07 16 52 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 53 H 0.07 2.23 6.16 -2.39 -0.01 2.22 16 Total: -1.00 -75.71 389.55 3.68 -72.02 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.79 Total: 15.05 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.24 Total: 3.45 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -3.69 Total: -109.45 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.33 Total: -30.77 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 1.67 Total: 49.70 kcal Total: -75.71 3.68 -72.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098589717.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.886 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds