Wall clock time and date at job start Tue Mar 31 2020 21:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.55691 * 2 1 4 4 C 1.53301 * 109.51391 * 120.12268 * 2 1 3 5 5 N 1.47149 * 108.37649 * 172.27941 * 4 2 1 6 6 C 1.34776 * 120.98957 * 129.40683 * 5 4 2 7 7 O 1.21285 * 119.99701 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99990 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.46837 * 185.19222 * 8 6 5 10 10 C 1.53000 * 115.55276 * 65.27813 * 9 8 6 11 11 C 1.53006 * 117.51304 * 210.97958 * 9 8 6 12 12 C 1.53005 * 60.00043 * 107.48138 * 11 9 8 13 13 C 1.47161 * 118.02400 * 309.67528 * 5 4 2 14 14 C 1.52809 * 108.65089 * 50.14263 * 13 5 4 15 15 C 1.52986 * 109.24005 * 68.04214 * 14 13 5 16 16 C 1.53195 * 109.34480 * 181.12384 * 15 14 13 17 17 N 1.46931 * 108.77630 * 305.42561 * 16 15 14 18 18 C 1.36937 * 120.64443 * 233.69461 * 17 16 15 19 19 H 1.08000 * 119.99910 * 31.54777 * 18 17 16 20 20 C 1.38810 * 119.99875 * 211.55100 * 18 17 16 21 21 N 1.31622 * 120.00262 * 10.26529 * 20 18 17 22 22 Si 1.86807 * 119.99842 * 190.26340 * 20 18 17 23 23 H 1.48493 * 109.46967 * 90.00256 * 22 20 18 24 24 H 1.48501 * 109.46897 * 209.99874 * 22 20 18 25 25 H 1.48503 * 109.46859 * 329.99866 * 22 20 18 26 26 C 1.46927 * 118.71396 * 53.67755 * 17 16 15 27 27 C 1.52998 * 109.43622 * 188.08250 * 14 13 5 28 28 O 1.42898 * 109.40510 * 308.11256 * 14 13 5 29 29 H 1.09006 * 109.47220 * 299.87816 * 1 2 3 30 30 H 1.08996 * 109.47205 * 59.87535 * 1 2 3 31 31 H 1.08999 * 109.47628 * 179.87583 * 1 2 3 32 32 H 1.08999 * 109.68071 * 52.55802 * 4 2 1 33 33 H 1.09000 * 109.68730 * 291.99979 * 4 2 1 34 34 H 1.08994 * 109.46848 * 65.19104 * 8 6 5 35 35 H 1.09004 * 109.46890 * 305.18757 * 8 6 5 36 36 H 1.08998 * 109.46811 * 269.26768 * 10 9 8 37 37 H 1.08996 * 109.47193 * 29.27197 * 10 9 8 38 38 H 1.09000 * 109.47249 * 149.27172 * 10 9 8 39 39 H 1.09008 * 117.49406 * 214.97054 * 11 9 8 40 40 H 1.08994 * 117.49988 * 359.97438 * 11 9 8 41 41 H 1.08996 * 117.49633 * 252.51012 * 12 11 9 42 42 H 1.08994 * 117.51902 * 107.47711 * 12 11 9 43 43 H 1.09004 * 109.67444 * 169.92952 * 13 5 4 44 44 H 1.08994 * 109.67659 * 290.47236 * 13 5 4 45 45 H 1.08992 * 109.49169 * 301.08370 * 15 14 13 46 46 H 1.09002 * 109.49041 * 61.16577 * 15 14 13 47 47 H 1.09001 * 109.58652 * 185.64531 * 16 15 14 48 48 H 1.08997 * 109.70884 * 65.28871 * 16 15 14 49 49 H 0.97004 * 119.99646 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.58818 * 186.54090 * 26 17 16 51 51 H 1.09003 * 109.70987 * 66.18211 * 26 17 16 52 52 H 1.08998 * 109.48582 * 298.95624 * 27 14 13 53 53 H 1.08998 * 109.48948 * 58.99921 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 1.2498 5 7 3.5013 -0.8749 1.1341 6 6 4.3190 -0.5010 2.1380 7 8 5.5192 -0.6329 2.0236 8 6 3.7421 0.0809 3.4028 9 6 4.8791 0.5374 4.3190 10 6 5.7302 1.6931 3.7891 11 6 4.6406 0.4701 5.8289 12 6 5.5828 -0.5314 5.1579 13 6 4.0416 -1.4394 -0.1129 14 6 3.4306 -0.6877 -1.2947 15 6 3.9556 0.7492 -1.3040 16 6 3.3228 1.5131 -2.4715 17 7 3.5736 0.7702 -3.7141 18 6 4.1572 1.3853 -4.7894 19 1 4.8724 2.1796 -4.6345 20 6 3.8295 0.9879 -6.0784 21 7 2.8188 0.1686 -6.2776 22 14 4.8231 1.6158 -7.5304 23 1 5.9506 0.6871 -7.7972 24 1 3.9513 1.6935 -8.7301 25 1 5.3569 2.9659 -7.2180 26 6 3.1864 -0.6456 -3.7805 27 6 3.8206 -1.3861 -2.5989 28 8 2.0075 -0.6763 -1.1656 29 1 -0.3634 0.5120 0.8911 30 1 -0.3633 0.5157 -0.8888 31 1 -0.3634 -1.0276 -0.0022 32 1 1.5765 -1.7082 1.3204 33 1 1.8023 -0.1402 2.1378 34 1 3.1465 -0.6765 3.9124 35 1 3.1103 0.9339 3.1550 36 1 6.5725 1.2945 3.2237 37 1 5.1227 2.3238 3.1400 38 1 6.1016 2.2844 4.6260 39 1 5.0900 1.2493 6.4446 40 1 3.6733 0.1010 6.1696 41 1 5.2355 -1.5596 5.0572 42 1 6.6521 -0.4113 5.3318 43 1 5.1256 -1.3253 -0.1279 44 1 3.7823 -2.4959 -0.1802 45 1 3.6944 1.2379 -0.3655 46 1 5.0393 0.7397 -1.4204 47 1 3.7681 2.5055 -2.5430 48 1 2.2486 1.6053 -2.3113 49 1 2.5901 -0.1093 -7.1784 50 1 3.5415 -1.0781 -4.7158 51 1 2.1012 -0.7328 -3.7264 52 1 4.9054 -1.3787 -2.7050 53 1 3.4640 -2.4159 -2.5807 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098617271.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:56 Heat of formation + Delta-G solvation = -49.138667 kcal Electronic energy + Delta-G solvation = -31700.004357 eV Core-core repulsion = 27765.367337 eV Total energy + Delta-G solvation = -3934.637020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.91502 -40.35087 -38.47426 -37.88040 -35.71683 -35.09429 -33.33945 -31.69464 -31.48990 -30.75202 -29.25367 -28.18377 -27.20041 -25.73945 -24.19989 -23.27537 -23.14028 -22.29457 -20.88755 -20.37706 -19.47695 -18.88195 -18.14588 -17.30175 -16.99938 -16.83855 -16.66445 -16.11371 -15.95651 -15.78734 -15.23938 -15.20486 -14.96476 -14.88682 -14.82927 -14.46134 -13.90081 -13.81082 -13.41706 -13.25672 -13.22849 -13.19353 -13.04593 -12.98668 -12.82210 -12.75698 -12.66089 -12.55732 -12.29291 -12.22971 -12.10381 -12.04327 -11.87203 -11.74383 -11.43191 -11.32228 -11.12950 -10.84425 -10.75483 -10.55551 -10.38119 -9.47519 -8.62120 -7.86645 -5.38734 1.45448 1.46508 1.55619 1.64403 1.86916 2.49279 2.72076 2.88497 3.28064 3.54407 3.63805 3.70084 3.71090 3.80843 3.86594 3.92135 3.97565 4.08424 4.14432 4.20918 4.25432 4.37859 4.44815 4.47446 4.57342 4.62300 4.65469 4.68695 4.71621 4.76761 4.83151 4.86114 4.89765 4.95760 4.96963 4.99612 5.05640 5.08533 5.10546 5.14725 5.16316 5.27406 5.30424 5.34140 5.38490 5.42190 5.46814 5.62804 5.81023 6.39146 6.40915 6.42046 7.15712 7.18728 7.84725 8.39253 9.18787 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.003093 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.177287 B = 9050.443882 C = 9776.660178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.059 3.941 3 H 0.056 0.944 4 C 0.082 3.918 5 N -0.615 5.615 6 C 0.511 3.489 7 O -0.572 6.572 8 C -0.097 4.097 9 C -0.126 4.126 10 C -0.111 4.111 11 C -0.149 4.149 12 C -0.179 4.179 13 C 0.099 3.901 14 C 0.129 3.871 15 C -0.136 4.136 16 C 0.154 3.846 17 N -0.609 5.609 18 C -0.267 4.267 19 H 0.061 0.939 20 C -0.047 4.047 21 N -0.933 5.933 22 Si 0.970 3.030 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.270 1.270 26 C 0.192 3.808 27 C -0.119 4.119 28 O -0.378 6.378 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.015 0.985 49 H 0.251 0.749 50 H 0.053 0.947 51 H 0.000 1.000 52 H 0.065 0.935 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -1.450 25.429 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.001 3.999 3 H 0.074 0.926 4 C -0.040 4.040 5 N -0.348 5.348 6 C 0.301 3.699 7 O -0.451 6.451 8 C -0.136 4.136 9 C -0.126 4.126 10 C -0.168 4.168 11 C -0.186 4.186 12 C -0.216 4.216 13 C -0.025 4.025 14 C 0.089 3.911 15 C -0.175 4.175 16 C 0.029 3.971 17 N -0.332 5.332 18 C -0.397 4.397 19 H 0.079 0.921 20 C -0.242 4.242 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.195 1.195 26 C 0.067 3.933 27 C -0.159 4.159 28 O -0.297 6.297 29 H 0.124 0.876 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.033 0.967 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.018 0.982 52 H 0.084 0.916 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.078 -1.643 25.101 25.342 hybrid contribution 0.779 0.253 -1.445 1.661 sum -2.299 -1.390 23.656 23.808 Atomic orbital electron populations 1.21713 0.90758 1.03502 1.03375 1.22707 0.96676 0.95554 0.85012 0.92598 1.22706 0.78393 1.03042 0.99837 1.48281 1.07967 1.63010 1.15543 1.21330 0.86291 0.76938 0.85325 1.90679 1.16647 1.56055 1.81693 1.21345 0.97958 1.02894 0.91389 1.21111 0.99299 0.99638 0.92566 1.21268 0.98840 0.96001 1.00708 1.23258 1.01434 1.01596 0.92290 1.22937 0.98533 0.95479 1.04659 1.22019 0.99613 0.97534 0.83300 1.21368 0.81284 0.94410 0.94085 1.22312 1.00040 0.96566 0.98594 1.20818 0.96243 0.93930 0.86127 1.44232 1.71129 1.06847 1.11003 1.19477 1.17194 1.17455 0.85579 0.92095 1.25924 0.97743 1.00361 1.00219 1.70156 1.28836 1.38291 1.20611 0.85241 0.77756 0.78438 0.78825 1.21077 1.21825 1.19461 1.20364 0.94575 0.83298 0.95083 1.22027 1.00408 0.99184 0.94257 1.88051 1.20255 1.76980 1.44438 0.87619 0.93445 0.91294 0.89246 0.85394 0.86214 0.86458 0.94204 0.92667 0.91398 0.87823 0.86854 0.89376 0.89760 0.90144 0.90401 0.91181 0.92895 0.93618 0.96748 0.94023 0.92871 0.98227 0.91625 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.57 71.98 0.69 -1.81 16 2 C 0.06 1.37 3.02 30.69 0.09 1.46 16 3 H 0.06 1.41 6.29 -2.39 -0.02 1.39 16 4 C 0.08 1.40 5.84 86.36 0.50 1.90 16 5 N -0.61 -14.51 2.53 -818.26 -2.07 -16.58 16 6 C 0.51 12.37 7.54 87.66 0.66 13.03 16 7 O -0.57 -18.74 14.46 -3.04 -0.04 -18.78 16 8 C -0.10 -1.45 3.99 29.85 0.12 -1.33 16 9 C -0.13 -2.13 1.60 -52.18 -0.08 -2.21 16 10 C -0.11 -2.19 9.22 71.98 0.66 -1.53 16 11 C -0.15 -1.75 9.87 30.60 0.30 -1.44 16 12 C -0.18 -3.07 9.87 30.60 0.30 -2.77 16 13 C 0.10 2.90 5.26 86.19 0.45 3.36 16 14 C 0.13 4.42 0.68 -10.86 -0.01 4.41 16 15 C -0.14 -4.98 4.31 30.65 0.13 -4.85 16 16 C 0.15 6.84 6.28 86.36 0.54 7.38 16 17 N -0.61 -32.10 2.98 -699.08 -2.09 -34.18 16 18 C -0.27 -15.26 9.58 84.03 0.81 -14.45 16 19 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 20 C -0.05 -2.69 5.06 84.86 0.43 -2.26 16 21 N -0.93 -56.44 11.04 21.65 0.24 -56.20 16 22 Si 0.97 45.95 29.57 68.60 2.03 47.98 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 26 C 0.19 9.75 5.02 86.36 0.43 10.19 16 27 C -0.12 -4.75 5.10 30.66 0.16 -4.59 16 28 O -0.38 -12.63 8.65 -148.98 -1.29 -13.92 16 29 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 1.17 5.99 -2.39 -0.01 1.16 16 34 H 0.12 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.12 1.27 7.39 -2.38 -0.02 1.25 16 36 H 0.04 1.01 7.55 -2.39 -0.02 0.99 16 37 H 0.05 1.06 8.04 -2.39 -0.02 1.05 16 38 H 0.07 1.09 7.88 -2.39 -0.02 1.07 16 39 H 0.10 1.06 8.03 -2.38 -0.02 1.04 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 2.66 7.07 -2.38 -0.02 2.65 16 44 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 45 H 0.07 2.27 6.15 -2.39 -0.01 2.25 16 46 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 48 H 0.01 0.66 7.83 -2.39 -0.02 0.64 16 49 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 50 H 0.05 3.03 6.10 -2.39 -0.01 3.02 16 51 H 0.00 -0.02 7.83 -2.39 -0.02 -0.04 16 52 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 53 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -73.24 400.24 3.84 -69.40 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.87 Total: 17.80 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.19 Total: 4.49 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -3.92 Total: -106.96 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.33 Total: -32.70 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.24 3.84 -69.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098617271.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.261 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds