Wall clock time and date at job start Tue Mar 31 2020 21:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.55558 * 2 1 4 4 C 1.52842 * 109.58532 * 240.02502 * 2 1 3 5 5 N 1.47156 * 108.61750 * 187.89496 * 4 2 1 6 6 C 1.34782 * 120.98530 * 230.52596 * 5 4 2 7 7 O 1.21284 * 119.99749 * 179.72310 * 6 5 4 8 8 C 1.50699 * 120.00117 * 359.71772 * 6 5 4 9 9 C 1.52996 * 109.47418 * 186.86095 * 8 6 5 10 10 C 1.52999 * 115.56618 * 279.90327 * 9 8 6 11 11 C 1.53012 * 117.49446 * 65.59112 * 9 8 6 12 12 C 1.53001 * 59.99826 * 107.48863 * 11 9 8 13 13 C 1.47152 * 118.02865 * 50.25589 * 5 4 2 14 14 C 1.53263 * 108.40444 * 309.79765 * 13 5 4 15 15 C 1.52981 * 109.39153 * 292.17803 * 14 13 5 16 16 C 1.53194 * 109.34540 * 178.87743 * 15 14 13 17 17 N 1.46927 * 108.77858 * 54.56850 * 16 15 14 18 18 C 1.36935 * 120.64239 * 126.35441 * 17 16 15 19 19 H 1.08002 * 120.00208 * 209.55244 * 18 17 16 20 20 C 1.38813 * 120.00099 * 29.55050 * 18 17 16 21 21 N 1.31621 * 119.99827 * 13.46860 * 20 18 17 22 22 Si 1.86800 * 120.00276 * 193.46830 * 20 18 17 23 23 H 1.48508 * 109.46837 * 60.00079 * 22 20 18 24 24 H 1.48500 * 109.47360 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47342 * 300.00297 * 22 20 18 26 26 C 1.46921 * 118.71692 * 306.33171 * 17 16 15 27 27 C 1.52991 * 109.35855 * 172.09302 * 14 13 5 28 28 O 1.42895 * 109.32350 * 52.15403 * 14 13 5 29 29 H 1.09002 * 109.47065 * 299.87713 * 1 2 3 30 30 H 1.09001 * 109.46667 * 59.87271 * 1 2 3 31 31 H 1.09003 * 109.47275 * 179.87465 * 1 2 3 32 32 H 1.09003 * 109.61368 * 68.06692 * 4 2 1 33 33 H 1.09003 * 109.51594 * 307.65938 * 4 2 1 34 34 H 1.09001 * 109.46595 * 66.86494 * 8 6 5 35 35 H 1.08997 * 109.47440 * 306.86951 * 8 6 5 36 36 H 1.08991 * 109.47273 * 210.23940 * 10 9 8 37 37 H 1.09004 * 109.46829 * 330.24349 * 10 9 8 38 38 H 1.09002 * 109.46965 * 90.23619 * 10 9 8 39 39 H 1.08997 * 117.49408 * 359.97438 * 11 9 8 40 40 H 1.09005 * 117.49443 * 214.98352 * 11 9 8 41 41 H 1.09002 * 117.49705 * 107.49001 * 12 11 9 42 42 H 1.09001 * 117.50048 * 252.50501 * 12 11 9 43 43 H 1.09000 * 109.67436 * 69.52327 * 13 5 4 44 44 H 1.08995 * 109.68093 * 190.03073 * 13 5 4 45 45 H 1.08999 * 109.49405 * 298.83335 * 15 14 13 46 46 H 1.08993 * 109.49556 * 58.91312 * 15 14 13 47 47 H 1.09003 * 109.58215 * 294.78235 * 16 15 14 48 48 H 1.09001 * 109.58771 * 174.36099 * 16 15 14 49 49 H 0.97002 * 120.00258 * 180.02562 * 21 20 18 50 50 H 1.09005 * 109.58769 * 293.88185 * 26 17 16 51 51 H 1.09004 * 109.58660 * 173.46057 * 26 17 16 52 52 H 1.09003 * 109.49102 * 301.10992 * 27 14 13 53 53 H 1.09001 * 109.49679 * 61.18701 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0270 0.0000 4 6 2.0424 -0.7194 -1.2474 5 7 3.5013 -0.8752 -1.1340 6 6 4.3191 -0.5015 -2.1380 7 8 5.5193 -0.6332 -2.0234 8 6 3.7422 0.0800 -3.4030 9 6 4.8561 0.2582 -4.4367 10 6 5.7291 1.5019 -4.2587 11 6 5.5289 -1.0061 -4.9752 12 6 4.5744 -0.2087 -5.8662 13 6 4.0411 -1.4454 0.1105 14 6 3.4305 -0.6878 1.2947 15 6 3.9557 0.7490 1.3037 16 6 3.3232 1.5132 2.4711 17 7 3.5739 0.7704 3.7137 18 6 4.1568 1.3859 4.7892 19 1 4.7595 0.8127 5.4781 20 6 3.9730 2.7465 4.9939 21 7 3.0406 3.3924 4.3262 22 14 5.0489 3.6607 6.2170 23 1 6.4714 3.5488 5.8053 24 1 4.6548 5.0921 6.2499 25 1 4.8765 3.0682 7.5677 26 6 3.1866 -0.6453 3.7804 27 6 3.8207 -1.3860 2.5989 28 8 2.0075 -0.6764 1.1656 29 1 -0.3633 0.5119 0.8911 30 1 -0.3633 0.5158 -0.8889 31 1 -0.3634 -1.0277 -0.0022 32 1 1.8037 -0.1308 -2.1332 33 1 1.5730 -1.7005 -1.3205 34 1 3.2907 1.0478 -3.1850 35 1 2.9830 -0.5941 -3.7995 36 1 6.0877 1.8364 -5.2321 37 1 5.1418 2.2949 -3.7957 38 1 6.5798 1.2605 -3.6214 39 1 5.1782 -1.9647 -4.5927 40 1 6.5936 -0.9517 -5.2026 41 1 5.0111 0.3703 -6.6800 42 1 3.5956 -0.6427 -6.0704 43 1 3.7777 -2.5011 0.1750 44 1 5.1255 -1.3363 0.1241 45 1 5.0394 0.7395 1.4199 46 1 3.6945 1.2376 0.3651 47 1 2.2489 1.6032 2.3095 48 1 3.7685 2.5055 2.5423 49 1 2.9124 4.3432 4.4690 50 1 2.1013 -0.7302 3.7250 51 1 3.5417 -1.0776 4.7159 52 1 3.4635 -2.4157 2.5811 53 1 4.9055 -1.3788 2.7050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098617273.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:01 Heat of formation + Delta-G solvation = -48.955931 kcal Electronic energy + Delta-G solvation = -31788.443766 eV Core-core repulsion = 27853.814670 eV Total energy + Delta-G solvation = -3934.629096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.90933 -40.36369 -38.46944 -37.88433 -35.71755 -35.13820 -33.21908 -31.85264 -31.39939 -30.77196 -29.29493 -28.16171 -27.21257 -25.73311 -24.19898 -23.30602 -23.16368 -22.27787 -20.87466 -20.38467 -19.48924 -18.89053 -18.14907 -17.28912 -17.05750 -16.78403 -16.68059 -16.14483 -15.89641 -15.78651 -15.29618 -15.25931 -14.95174 -14.87358 -14.79748 -14.48646 -13.89595 -13.79503 -13.44426 -13.30572 -13.25967 -13.12599 -13.08534 -12.94411 -12.85452 -12.79007 -12.61039 -12.56074 -12.32975 -12.27299 -12.06469 -12.02106 -11.91269 -11.74873 -11.43448 -11.31207 -11.12819 -10.86172 -10.76948 -10.54381 -10.40491 -9.47842 -8.64891 -7.87610 -5.35922 1.44319 1.47094 1.53494 1.63403 1.87356 2.49176 2.71629 2.86942 3.26884 3.54726 3.63784 3.69742 3.71287 3.83411 3.85531 3.91804 3.96406 4.07855 4.13896 4.17777 4.25942 4.41077 4.44715 4.49337 4.55266 4.63067 4.66479 4.68442 4.70526 4.77373 4.81816 4.84701 4.93709 4.95294 4.96511 4.97310 5.04872 5.06865 5.12609 5.14161 5.16393 5.28997 5.32531 5.34932 5.36630 5.39882 5.47226 5.62205 5.71192 6.36580 6.38403 6.40754 7.14370 7.17805 7.85218 8.38744 9.18223 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003369 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.672765 B = 8310.247556 C = 9064.099585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.084 3.916 5 N -0.616 5.616 6 C 0.510 3.490 7 O -0.572 6.572 8 C -0.098 4.098 9 C -0.127 4.127 10 C -0.112 4.112 11 C -0.174 4.174 12 C -0.148 4.148 13 C 0.099 3.901 14 C 0.126 3.874 15 C -0.143 4.143 16 C 0.197 3.803 17 N -0.610 5.610 18 C -0.265 4.265 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.273 1.273 26 C 0.150 3.850 27 C -0.110 4.110 28 O -0.374 6.374 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.055 0.945 47 H -0.002 1.002 48 H 0.046 0.954 49 H 0.249 0.751 50 H 0.016 0.984 51 H 0.055 0.945 52 H 0.091 0.909 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -9.635 -21.039 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.062 0.938 4 C -0.038 4.038 5 N -0.349 5.349 6 C 0.300 3.700 7 O -0.451 6.451 8 C -0.138 4.138 9 C -0.127 4.127 10 C -0.169 4.169 11 C -0.212 4.212 12 C -0.185 4.185 13 C -0.025 4.025 14 C 0.086 3.914 15 C -0.182 4.182 16 C 0.071 3.929 17 N -0.333 5.333 18 C -0.395 4.395 19 H 0.084 0.916 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.025 3.975 27 C -0.150 4.150 28 O -0.294 6.294 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.016 0.984 48 H 0.064 0.936 49 H 0.058 0.942 50 H 0.034 0.966 51 H 0.073 0.927 52 H 0.109 0.891 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.588 -9.634 -20.828 23.227 hybrid contribution 0.860 1.033 1.080 1.724 sum -2.728 -8.602 -19.748 21.712 Atomic orbital electron populations 1.21697 0.90556 1.03708 1.03204 1.22554 0.96786 0.95211 0.85255 0.93841 1.22588 0.78512 1.03140 0.99564 1.48279 1.07953 1.62850 1.15835 1.21330 0.86335 0.76939 0.85411 1.90674 1.16593 1.56020 1.81764 1.21365 0.98257 1.03616 0.90533 1.21122 0.99530 0.96748 0.95300 1.21301 0.98611 0.95327 1.01710 1.22855 0.98636 0.95181 1.04486 1.23304 1.01179 1.02269 0.91765 1.22148 0.99553 0.97621 0.83142 1.21512 0.81250 0.93904 0.94729 1.22445 0.99707 0.97215 0.98830 1.20301 0.94944 0.94149 0.83542 1.44265 1.70865 1.07322 1.10861 1.19509 1.23097 0.92604 1.04334 0.91609 1.25868 0.98783 0.99019 1.00950 1.70161 1.33392 1.08629 1.45907 0.85330 0.78566 0.77209 0.79268 1.20636 1.21849 1.19899 1.20889 0.96059 0.84297 0.96282 1.21891 1.00694 0.99366 0.93020 1.87985 1.20261 1.76695 1.44413 0.93661 0.88002 0.90573 0.85866 0.88638 0.86935 0.86073 0.91149 0.92337 0.94347 0.89910 0.89716 0.87654 0.86935 0.89546 0.90328 0.93650 0.92639 0.98386 0.93561 0.94174 0.96580 0.92691 0.89105 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.57 71.98 0.69 -1.98 16 2 C 0.06 1.54 3.00 30.54 0.09 1.63 16 3 H 0.04 1.32 6.29 -2.39 -0.02 1.31 16 4 C 0.08 1.54 5.74 86.20 0.50 2.03 16 5 N -0.62 -15.30 2.53 -818.27 -2.07 -17.37 16 6 C 0.51 13.25 7.56 87.66 0.66 13.91 16 7 O -0.57 -19.64 14.80 -3.04 -0.05 -19.68 16 8 C -0.10 -1.68 4.01 29.85 0.12 -1.56 16 9 C -0.13 -2.33 1.59 -52.18 -0.08 -2.41 16 10 C -0.11 -2.30 9.67 71.98 0.70 -1.61 16 11 C -0.17 -3.30 9.25 30.60 0.28 -3.02 16 12 C -0.15 -1.93 9.82 30.60 0.30 -1.63 16 13 C 0.10 2.87 5.30 86.34 0.46 3.33 16 14 C 0.13 4.31 0.68 -10.71 -0.01 4.30 16 15 C -0.14 -5.86 4.33 30.65 0.13 -5.73 16 16 C 0.20 10.01 5.05 86.36 0.44 10.45 16 17 N -0.61 -32.08 2.99 -699.08 -2.09 -34.17 16 18 C -0.27 -15.14 9.59 84.03 0.81 -14.33 16 19 H 0.07 3.64 7.86 -2.91 -0.02 3.62 16 20 C -0.05 -2.93 5.00 84.86 0.42 -2.51 16 21 N -0.93 -56.76 11.08 21.65 0.24 -56.52 16 22 Si 0.97 46.16 29.57 68.60 2.03 48.19 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.15 6.54 6.28 86.36 0.54 7.08 16 27 C -0.11 -3.85 5.10 30.66 0.16 -3.70 16 28 O -0.37 -12.43 8.64 -148.98 -1.29 -13.72 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 1.41 6.09 -2.39 -0.01 1.39 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.64 7.79 -2.39 -0.02 1.62 16 35 H 0.12 1.31 7.49 -2.39 -0.02 1.30 16 36 H 0.07 1.16 7.88 -2.39 -0.02 1.15 16 37 H 0.06 1.15 7.93 -2.39 -0.02 1.14 16 38 H 0.04 0.99 8.05 -2.39 -0.02 0.97 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.11 1.17 8.03 -2.39 -0.02 1.15 16 42 H 0.11 1.03 8.08 -2.39 -0.02 1.01 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 2.61 7.07 -2.39 -0.02 2.59 16 45 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.06 2.16 6.15 -2.39 -0.01 2.14 16 47 H 0.00 -0.10 7.83 -2.39 -0.02 -0.12 16 48 H 0.05 2.69 6.05 -2.39 -0.01 2.68 16 49 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 50 H 0.02 0.74 7.83 -2.38 -0.02 0.72 16 51 H 0.05 2.31 7.93 -2.38 -0.02 2.29 16 52 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 53 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.71 400.54 3.85 -69.87 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.87 Total: 19.15 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.20 Total: 4.25 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.92 Total: -108.06 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.33 Total: -33.40 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.71 3.85 -69.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098617273.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.910 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds