Wall clock time and date at job start Tue Mar 31 2020 21:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00095 * 2 1 4 4 C 1.53007 * 109.47078 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47314 * 240.00087 * 3 2 1 6 6 C 1.50694 * 109.47284 * 120.00035 * 3 2 1 7 7 O 1.21281 * 120.00107 * 352.57407 * 6 3 2 8 8 N 1.34775 * 120.00431 * 172.58156 * 6 3 2 9 9 C 1.47174 * 120.94565 * 3.96903 * 8 6 3 10 10 C 1.53292 * 108.36903 * 129.47285 * 9 8 6 11 11 H 1.09002 * 109.51172 * 292.32068 * 10 9 8 12 12 C 1.53003 * 109.51318 * 172.22130 * 10 9 8 13 13 O 1.42967 * 109.26954 * 52.27248 * 10 9 8 14 14 C 1.42897 * 114.20496 * 297.53431 * 13 10 9 15 15 C 1.52989 * 109.56129 * 302.53243 * 14 13 10 16 16 C 1.53201 * 109.34492 * 300.96742 * 15 14 13 17 17 N 1.46930 * 108.77546 * 305.42700 * 16 15 14 18 18 C 1.36935 * 120.63872 * 233.64447 * 17 16 15 19 19 H 1.07999 * 119.99859 * 30.03806 * 18 17 16 20 20 C 1.38807 * 119.99909 * 210.03201 * 18 17 16 21 21 N 1.31623 * 120.00324 * 13.71441 * 20 18 17 22 22 Si 1.86805 * 120.00010 * 193.71299 * 20 18 17 23 23 H 1.48501 * 109.46823 * 90.00279 * 22 20 18 24 24 H 1.48499 * 109.47211 * 210.00155 * 22 20 18 25 25 H 1.48493 * 109.47171 * 330.00540 * 22 20 18 26 26 C 1.46924 * 118.72197 * 53.66274 * 17 16 15 27 27 C 1.52994 * 109.55014 * 182.23501 * 14 13 10 28 28 C 1.47153 * 120.99193 * 183.95177 * 8 6 3 29 29 H 1.08002 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00286 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99993 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47116 * 169.97918 * 4 3 2 33 33 H 1.09003 * 109.47069 * 289.97914 * 4 3 2 34 34 H 1.09003 * 109.47226 * 49.97570 * 4 3 2 35 35 H 1.08995 * 109.47073 * 309.75898 * 5 3 2 36 36 H 1.09010 * 109.47066 * 69.75330 * 5 3 2 37 37 H 1.08994 * 109.47582 * 189.75459 * 5 3 2 38 38 H 1.09006 * 109.72676 * 9.73094 * 9 8 6 39 39 H 1.08999 * 109.64522 * 249.16981 * 9 8 6 40 40 H 1.09000 * 109.46591 * 300.10299 * 12 10 9 41 41 H 1.09001 * 109.47328 * 180.09753 * 12 10 9 42 42 H 1.09004 * 109.46487 * 60.09658 * 12 10 9 43 43 H 1.08998 * 109.48971 * 60.92595 * 15 14 13 44 44 H 1.08993 * 109.49608 * 181.00693 * 15 14 13 45 45 H 1.08997 * 109.58433 * 185.63256 * 16 15 14 46 46 H 1.08998 * 109.70001 * 65.28117 * 16 15 14 47 47 H 0.96998 * 120.00160 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.59176 * 186.54394 * 26 17 16 49 49 H 1.09007 * 109.58752 * 66.11716 * 26 17 16 50 50 H 1.08997 * 109.49869 * 179.00028 * 27 14 13 51 51 H 1.09008 * 109.49024 * 299.04538 * 27 14 13 52 52 H 1.08999 * 109.67796 * 110.73333 * 28 8 6 53 53 H 1.09001 * 109.67384 * 350.19069 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9299 1.3849 1.2304 7 8 2.8361 0.5387 2.0941 8 7 3.8089 2.3968 1.3712 9 6 3.8795 3.4816 0.3791 10 6 3.8158 4.8208 1.1222 11 1 2.8280 4.9443 1.5660 12 6 4.0811 5.9635 0.1399 13 8 4.8074 4.8366 2.1520 14 6 4.6225 3.8395 3.1587 15 6 3.2414 4.0048 3.7959 16 6 3.1294 5.4047 4.4081 17 7 4.2508 5.6063 5.3358 18 6 4.0250 5.9915 6.6303 19 1 3.1126 5.7000 7.1291 20 6 4.9690 6.7567 7.3013 21 7 5.9420 7.3376 6.6318 22 14 4.8584 6.9619 9.1548 23 1 5.6275 5.8793 9.8194 24 1 5.4235 8.2796 9.5415 25 1 3.4366 6.8899 9.5769 26 6 5.6191 5.3870 4.8476 27 6 5.7040 3.9874 4.2306 28 6 4.7256 2.4497 2.5211 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6022 3.4018 0.1782 33 1 0.5666 2.5159 -0.9667 34 1 0.3305 2.3150 0.7861 35 1 3.5295 0.4720 -1.3406 36 1 2.3125 1.5030 -2.1307 37 1 3.6138 2.2413 -1.1665 38 1 3.0392 3.4043 -0.3110 39 1 4.8165 3.4124 -0.1735 40 1 5.0691 5.8393 -0.3036 41 1 4.0374 6.9153 0.6693 42 1 3.3258 5.9497 -0.6459 43 1 2.4720 3.8784 3.0342 44 1 3.1085 3.2551 4.5757 45 1 2.1872 5.4925 4.9491 46 1 3.1687 6.1553 3.6187 47 1 6.6013 7.8725 7.1007 48 1 6.3203 5.4632 5.6787 49 1 5.8619 6.1346 4.0923 50 1 5.5517 3.2378 5.0071 51 1 6.6860 3.8478 3.7782 52 1 5.7475 2.2754 2.1842 53 1 4.4443 1.6896 3.2499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098619984.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:24 Heat of formation + Delta-G solvation = -13.120229 kcal Electronic energy + Delta-G solvation = -32338.767089 eV Core-core repulsion = 28405.691946 eV Total energy + Delta-G solvation = -3933.075143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.17018 -39.24579 -36.65174 -36.32668 -34.68164 -33.52678 -31.63841 -31.10594 -30.12923 -29.55837 -27.77584 -27.15982 -26.58102 -24.41712 -23.56490 -22.64663 -21.69898 -21.04801 -19.83738 -18.99562 -18.54124 -16.97573 -16.80555 -16.69984 -15.74343 -15.41811 -15.25485 -15.01889 -14.77988 -14.29405 -14.18495 -14.14249 -13.60073 -13.46075 -13.27485 -13.04047 -12.76920 -12.72071 -12.59576 -12.51950 -12.20543 -12.14281 -11.83357 -11.63896 -11.59779 -11.40534 -11.28024 -11.20748 -11.01062 -10.88392 -10.80015 -10.61380 -10.29540 -10.21663 -10.04367 -9.84904 -9.75392 -9.56625 -9.41235 -9.26871 -8.41989 -8.35644 -6.56901 -5.73205 -3.18655 2.03918 2.56859 2.92465 3.40484 3.47139 3.48363 3.88557 4.21478 4.38670 4.53063 4.60563 4.65602 4.72891 4.83245 5.05060 5.09226 5.12372 5.18218 5.24272 5.32775 5.36262 5.39418 5.43605 5.45793 5.50405 5.51699 5.60327 5.65222 5.67698 5.75775 5.83109 5.89338 5.89691 6.01073 6.07650 6.17481 6.32679 6.34284 6.37521 6.40081 6.53844 6.57201 6.60238 6.71501 6.78817 7.04618 7.32959 7.45804 7.63422 7.78996 7.84286 8.11683 8.51991 9.27839 9.90130 10.48972 11.34779 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003318 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.805583 B = 8437.483008 C = 8964.281013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.054 4.054 4 C -0.157 4.157 5 C -0.158 4.158 6 C 0.527 3.473 7 O -0.535 6.535 8 N -0.607 5.607 9 C 0.059 3.941 10 C 0.068 3.932 11 H 0.066 0.934 12 C -0.143 4.143 13 O -0.352 6.352 14 C 0.121 3.879 15 C -0.151 4.151 16 C 0.153 3.847 17 N -0.590 5.590 18 C -0.252 4.252 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.180 3.820 27 C -0.127 4.127 28 C 0.088 3.912 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.253 0.747 48 H 0.086 0.914 49 H 0.028 0.972 50 H 0.069 0.931 51 H 0.057 0.943 52 H 0.070 0.930 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -9.652 -19.424 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.140 4.140 3 C -0.058 4.058 4 C -0.214 4.214 5 C -0.215 4.215 6 C 0.315 3.685 7 O -0.411 6.411 8 N -0.340 5.340 9 C -0.063 4.063 10 C 0.009 3.991 11 H 0.084 0.916 12 C -0.200 4.200 13 O -0.271 6.271 14 C 0.081 3.919 15 C -0.191 4.191 16 C 0.027 3.973 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.054 3.946 27 C -0.167 4.167 28 C -0.035 4.035 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.089 0.911 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.967 -9.861 -18.866 22.108 hybrid contribution -0.167 -0.163 0.916 0.945 sum -6.134 -10.024 -17.951 21.455 Atomic orbital electron populations 1.23967 0.95860 1.02253 1.00966 1.22461 0.95656 0.96379 0.99484 1.19845 0.95668 0.96019 0.94220 1.22253 0.98990 0.96808 1.03348 1.22302 0.99826 1.03747 0.95665 1.20412 0.79683 0.80808 0.87577 1.90690 1.67721 1.39820 1.42867 1.48073 1.37252 1.23592 1.25108 1.23130 1.03695 0.87469 0.92044 1.22429 0.93909 0.93476 0.89315 0.91642 1.21713 1.02221 0.98224 0.97873 1.88073 1.49136 1.55009 1.34906 1.21732 0.97265 0.85231 0.87712 1.22511 0.95379 1.01609 0.99574 1.20764 0.92020 0.91850 0.92711 1.44001 1.00404 1.78874 1.08014 1.19186 1.05244 1.26047 0.87707 0.91916 1.25101 0.99280 0.96826 0.98285 1.70010 1.16745 1.33996 1.33924 0.86291 0.77693 0.77044 0.85724 1.21458 1.21764 1.20495 1.20673 0.87413 0.89003 0.97508 1.22216 0.95473 1.03417 0.95547 1.22494 0.92773 0.99727 0.88483 0.87810 0.88272 0.87042 0.90933 0.90874 0.91169 0.91881 0.91190 0.90170 0.87244 0.90579 0.91763 0.90992 0.91397 0.93217 0.91470 0.93235 0.96185 0.93681 0.89577 0.95435 0.91221 0.92413 0.91135 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 13.71 29.01 0.40 -1.35 16 2 C -0.12 -1.26 7.99 -36.03 -0.29 -1.55 16 3 C -0.05 -0.55 0.72 -156.81 -0.11 -0.66 16 4 C -0.16 -1.33 6.83 37.16 0.25 -1.08 16 5 C -0.16 -1.22 8.08 37.16 0.30 -0.92 16 6 C 0.53 7.33 6.49 -10.99 -0.07 7.26 16 7 O -0.53 -9.50 15.52 5.56 0.09 -9.42 16 8 N -0.61 -8.02 2.51 -172.29 -0.43 -8.46 16 9 C 0.06 0.62 3.29 -3.52 -0.01 0.61 16 10 C 0.07 0.86 2.95 -26.58 -0.08 0.79 16 11 H 0.07 0.89 6.29 -51.93 -0.33 0.57 16 12 C -0.14 -1.48 9.57 37.16 0.36 -1.12 16 13 O -0.35 -5.98 8.65 -35.23 -0.30 -6.29 16 14 C 0.12 2.08 0.68 -90.50 -0.06 2.02 16 15 C -0.15 -2.79 4.33 -26.63 -0.12 -2.91 16 16 C 0.15 3.33 6.28 -3.70 -0.02 3.30 16 17 N -0.59 -15.04 2.99 -172.31 -0.51 -15.56 16 18 C -0.25 -7.02 9.58 -15.06 -0.14 -7.17 16 19 H 0.06 1.73 7.87 -52.49 -0.41 1.32 16 20 C 0.00 0.10 4.98 -17.43 -0.09 0.02 16 21 N -0.90 -26.37 11.13 55.49 0.62 -25.75 16 22 Si 0.90 21.94 29.58 -169.99 -5.03 16.92 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.18 4.35 5.04 -3.71 -0.02 4.33 16 27 C -0.13 -2.46 5.10 -26.63 -0.14 -2.60 16 28 C 0.09 1.34 5.31 -3.55 -0.02 1.32 16 29 H 0.10 0.84 5.67 -52.49 -0.30 0.54 16 30 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.07 0.61 5.19 -51.93 -0.27 0.34 16 33 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 34 H 0.07 0.66 6.83 -51.93 -0.35 0.31 16 35 H 0.06 0.51 8.11 -51.93 -0.42 0.08 16 36 H 0.07 0.42 8.03 -51.92 -0.42 0.00 16 37 H 0.08 0.58 4.16 -51.93 -0.22 0.36 16 38 H 0.11 0.89 2.97 -51.93 -0.15 0.73 16 39 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.84 6.16 -51.93 -0.32 0.52 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 46 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.09 2.33 6.10 -51.93 -0.32 2.01 16 49 H 0.03 0.72 7.83 -51.92 -0.41 0.31 16 50 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 52 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 53 H 0.10 1.63 7.06 -51.93 -0.37 1.27 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -32.42 387.82 -8.45 -40.87 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.86 Total: 1.54 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.14 Total: 0.30 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.33 Total: -49.76 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.22 Total: -15.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.42 -8.45 -40.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098619984.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.747 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds