Wall clock time and date at job start Tue Mar 31 2020 21:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00095 * 2 1 4 4 C 1.53007 * 109.47078 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47314 * 240.00087 * 3 2 1 6 6 C 1.50694 * 109.47284 * 120.00035 * 3 2 1 7 7 O 1.21281 * 120.00107 * 352.57407 * 6 3 2 8 8 N 1.34775 * 120.00431 * 172.58156 * 6 3 2 9 9 C 1.47174 * 120.94565 * 3.96903 * 8 6 3 10 10 C 1.53292 * 108.36903 * 129.47285 * 9 8 6 11 11 H 1.09002 * 109.51172 * 292.32068 * 10 9 8 12 12 C 1.53003 * 109.51318 * 172.22130 * 10 9 8 13 13 O 1.42967 * 109.26954 * 52.27248 * 10 9 8 14 14 C 1.42897 * 114.20496 * 297.53431 * 13 10 9 15 15 C 1.52989 * 109.56129 * 302.53243 * 14 13 10 16 16 C 1.53201 * 109.34492 * 300.96742 * 15 14 13 17 17 N 1.46930 * 108.77546 * 305.42700 * 16 15 14 18 18 C 1.36935 * 120.63872 * 233.64447 * 17 16 15 19 19 H 1.07999 * 119.99859 * 30.03806 * 18 17 16 20 20 C 1.38807 * 119.99909 * 210.03201 * 18 17 16 21 21 N 1.31623 * 120.00324 * 13.71441 * 20 18 17 22 22 Si 1.86805 * 120.00010 * 193.71299 * 20 18 17 23 23 H 1.48501 * 109.46823 * 90.00279 * 22 20 18 24 24 H 1.48499 * 109.47211 * 210.00155 * 22 20 18 25 25 H 1.48493 * 109.47171 * 330.00540 * 22 20 18 26 26 C 1.46924 * 118.72197 * 53.66274 * 17 16 15 27 27 C 1.52994 * 109.55014 * 182.23501 * 14 13 10 28 28 C 1.47153 * 120.99193 * 183.95177 * 8 6 3 29 29 H 1.08002 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.00286 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99993 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47116 * 169.97918 * 4 3 2 33 33 H 1.09003 * 109.47069 * 289.97914 * 4 3 2 34 34 H 1.09003 * 109.47226 * 49.97570 * 4 3 2 35 35 H 1.08995 * 109.47073 * 309.75898 * 5 3 2 36 36 H 1.09010 * 109.47066 * 69.75330 * 5 3 2 37 37 H 1.08994 * 109.47582 * 189.75459 * 5 3 2 38 38 H 1.09006 * 109.72676 * 9.73094 * 9 8 6 39 39 H 1.08999 * 109.64522 * 249.16981 * 9 8 6 40 40 H 1.09000 * 109.46591 * 300.10299 * 12 10 9 41 41 H 1.09001 * 109.47328 * 180.09753 * 12 10 9 42 42 H 1.09004 * 109.46487 * 60.09658 * 12 10 9 43 43 H 1.08998 * 109.48971 * 60.92595 * 15 14 13 44 44 H 1.08993 * 109.49608 * 181.00693 * 15 14 13 45 45 H 1.08997 * 109.58433 * 185.63256 * 16 15 14 46 46 H 1.08998 * 109.70001 * 65.28117 * 16 15 14 47 47 H 0.96998 * 120.00160 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.59176 * 186.54394 * 26 17 16 49 49 H 1.09007 * 109.58752 * 66.11716 * 26 17 16 50 50 H 1.08997 * 109.49869 * 179.00028 * 27 14 13 51 51 H 1.09008 * 109.49024 * 299.04538 * 27 14 13 52 52 H 1.08999 * 109.67796 * 110.73333 * 28 8 6 53 53 H 1.09001 * 109.67384 * 350.19069 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9299 1.3849 1.2304 7 8 2.8361 0.5387 2.0941 8 7 3.8089 2.3968 1.3712 9 6 3.8795 3.4816 0.3791 10 6 3.8158 4.8208 1.1222 11 1 2.8280 4.9443 1.5660 12 6 4.0811 5.9635 0.1399 13 8 4.8074 4.8366 2.1520 14 6 4.6225 3.8395 3.1587 15 6 3.2414 4.0048 3.7959 16 6 3.1294 5.4047 4.4081 17 7 4.2508 5.6063 5.3358 18 6 4.0250 5.9915 6.6303 19 1 3.1126 5.7000 7.1291 20 6 4.9690 6.7567 7.3013 21 7 5.9420 7.3376 6.6318 22 14 4.8584 6.9619 9.1548 23 1 5.6275 5.8793 9.8194 24 1 5.4235 8.2796 9.5415 25 1 3.4366 6.8899 9.5769 26 6 5.6191 5.3870 4.8476 27 6 5.7040 3.9874 4.2306 28 6 4.7256 2.4497 2.5211 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.6022 3.4018 0.1782 33 1 0.5666 2.5159 -0.9667 34 1 0.3305 2.3150 0.7861 35 1 3.5295 0.4720 -1.3406 36 1 2.3125 1.5030 -2.1307 37 1 3.6138 2.2413 -1.1665 38 1 3.0392 3.4043 -0.3110 39 1 4.8165 3.4124 -0.1735 40 1 5.0691 5.8393 -0.3036 41 1 4.0374 6.9153 0.6693 42 1 3.3258 5.9497 -0.6459 43 1 2.4720 3.8784 3.0342 44 1 3.1085 3.2551 4.5757 45 1 2.1872 5.4925 4.9491 46 1 3.1687 6.1553 3.6187 47 1 6.6013 7.8725 7.1007 48 1 6.3203 5.4632 5.6787 49 1 5.8619 6.1346 4.0923 50 1 5.5517 3.2378 5.0071 51 1 6.6860 3.8478 3.7782 52 1 5.7475 2.2754 2.1842 53 1 4.4443 1.6896 3.2499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098619984.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:22 Heat of formation + Delta-G solvation = -32.488111 kcal Electronic energy + Delta-G solvation = -32339.606944 eV Core-core repulsion = 28405.691946 eV Total energy + Delta-G solvation = -3933.914997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.25666 -40.47740 -38.01523 -37.46928 -35.84986 -35.06151 -33.35997 -31.93101 -31.68026 -31.17365 -28.59467 -28.38340 -27.56711 -26.10125 -24.51211 -24.23013 -23.20987 -22.24407 -21.09389 -20.40911 -19.40349 -18.87630 -17.79727 -17.62828 -17.03146 -16.93857 -16.58181 -16.16196 -15.99320 -15.78550 -15.26289 -15.19467 -15.09383 -14.98147 -14.89467 -14.41421 -13.94142 -13.61451 -13.45559 -13.36166 -13.25316 -13.16303 -13.03873 -13.00580 -12.92182 -12.80174 -12.65695 -12.55362 -12.32809 -12.21842 -12.08935 -11.97781 -11.87131 -11.73984 -11.69498 -11.35171 -11.24958 -10.79214 -10.65347 -10.54970 -10.27335 -9.51782 -8.64637 -7.87048 -5.36380 1.27975 1.45527 1.46895 1.53567 1.55790 1.93021 2.49640 2.70575 3.27198 3.37218 3.57276 3.65077 3.68784 3.78362 3.87555 3.90570 3.93877 4.07504 4.10593 4.17385 4.36502 4.41078 4.44381 4.45273 4.53887 4.60333 4.67419 4.69227 4.73604 4.76522 4.82982 4.85150 4.88730 4.89786 4.95368 5.03801 5.04449 5.09150 5.13560 5.22254 5.26368 5.27634 5.34132 5.38914 5.45712 5.63027 5.68845 5.79486 5.82024 6.31830 6.39083 6.40091 7.06770 7.15150 7.84797 8.38807 9.18710 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003318 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.805583 B = 8437.483008 C = 8964.281013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.145 4.145 3 C -0.049 4.049 4 C -0.157 4.157 5 C -0.156 4.156 6 C 0.521 3.479 7 O -0.582 6.582 8 N -0.606 5.606 9 C 0.063 3.937 10 C 0.058 3.942 11 H 0.056 0.944 12 C -0.138 4.138 13 O -0.375 6.375 14 C 0.129 3.871 15 C -0.136 4.136 16 C 0.155 3.845 17 N -0.608 5.608 18 C -0.268 4.268 19 H 0.061 0.939 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.270 1.270 26 C 0.192 3.808 27 C -0.119 4.119 28 C 0.096 3.904 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.016 0.984 47 H 0.251 0.749 48 H 0.052 0.948 49 H 0.001 0.999 50 H 0.065 0.935 51 H 0.076 0.924 52 H 0.084 0.916 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 -10.157 -21.939 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.163 4.163 3 C -0.052 4.052 4 C -0.214 4.214 5 C -0.212 4.212 6 C 0.311 3.689 7 O -0.461 6.461 8 N -0.338 5.338 9 C -0.058 4.058 10 C 0.000 4.000 11 H 0.074 0.926 12 C -0.195 4.195 13 O -0.294 6.294 14 C 0.089 3.911 15 C -0.175 4.175 16 C 0.029 3.971 17 N -0.331 5.331 18 C -0.398 4.398 19 H 0.079 0.921 20 C -0.242 4.242 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.195 1.195 26 C 0.067 3.933 27 C -0.158 4.158 28 C -0.027 4.027 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.159 0.841 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.125 0.875 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.019 0.981 50 H 0.084 0.916 51 H 0.094 0.906 52 H 0.102 0.898 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.200 -10.364 -21.424 24.864 hybrid contribution 0.150 0.021 1.660 1.667 sum -7.050 -10.343 -19.763 23.394 Atomic orbital electron populations 1.24179 0.95505 1.03332 0.99049 1.22503 0.96243 0.96286 1.01272 1.19888 0.95619 0.96577 0.93098 1.22300 0.98470 0.95922 1.04692 1.22325 0.99887 1.03796 0.95221 1.21244 0.79460 0.79944 0.88275 1.90667 1.69081 1.41555 1.44809 1.48150 1.36612 1.24267 1.24810 1.23336 1.06071 0.84955 0.91426 1.22751 0.92443 0.95897 0.88924 0.92625 1.21740 1.04014 0.95892 0.97860 1.88052 1.50717 1.54995 1.35684 1.21446 0.95170 0.86837 0.87644 1.22310 0.97120 0.98677 0.99438 1.20812 0.90675 0.93664 0.91945 1.44244 1.01639 1.79144 1.08111 1.19480 1.05312 1.25949 0.89052 0.92104 1.25849 0.99069 0.96768 1.02495 1.70170 1.17402 1.34734 1.35444 0.85261 0.77964 0.76672 0.80489 1.21121 1.21841 1.19510 1.20369 0.86311 0.91104 0.95552 1.22025 0.97648 0.99895 0.96274 1.22191 0.94053 0.97364 0.89133 0.86549 0.87425 0.88194 0.90622 0.87864 0.92332 0.92497 0.88666 0.89389 0.84134 0.88777 0.91087 0.93235 0.87543 0.91348 0.92962 0.93635 0.96634 0.94020 0.92930 0.98079 0.91622 0.90555 0.89830 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 13.71 67.78 0.93 -1.98 16 2 C -0.14 -2.75 7.99 25.65 0.21 -2.55 16 3 C -0.05 -0.85 0.72 -53.67 -0.04 -0.89 16 4 C -0.16 -2.09 6.83 71.98 0.49 -1.60 16 5 C -0.16 -1.81 8.08 71.98 0.58 -1.23 16 6 C 0.52 13.73 6.49 87.66 0.57 14.30 16 7 O -0.58 -20.67 15.52 -3.03 -0.05 -20.72 16 8 N -0.61 -14.89 2.51 -817.38 -2.05 -16.94 16 9 C 0.06 1.12 3.29 86.35 0.28 1.40 16 10 C 0.06 1.36 2.95 30.69 0.09 1.45 16 11 H 0.06 1.41 6.29 -2.39 -0.02 1.39 16 12 C -0.14 -2.48 9.57 71.98 0.69 -1.79 16 13 O -0.37 -12.44 8.65 -148.98 -1.29 -13.73 16 14 C 0.13 4.44 0.68 -10.71 -0.01 4.44 16 15 C -0.14 -5.04 4.33 30.66 0.13 -4.91 16 16 C 0.15 6.86 6.28 86.36 0.54 7.40 16 17 N -0.61 -32.00 2.99 -699.08 -2.09 -34.09 16 18 C -0.27 -15.31 9.58 84.03 0.81 -14.51 16 19 H 0.06 3.43 7.87 -2.91 -0.02 3.40 16 20 C -0.05 -2.64 4.98 84.86 0.42 -2.21 16 21 N -0.93 -56.20 11.13 21.65 0.24 -55.96 16 22 Si 0.97 45.93 29.58 68.60 2.03 47.96 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 C 0.19 9.69 5.04 86.36 0.44 10.13 16 27 C -0.12 -4.71 5.10 30.66 0.16 -4.55 16 28 C 0.10 2.85 5.31 86.34 0.46 3.31 16 29 H 0.12 1.52 5.67 -2.91 -0.02 1.50 16 30 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 31 H 0.10 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.08 0.96 5.19 -2.39 -0.01 0.94 16 33 H 0.10 0.78 7.91 -2.39 -0.02 0.76 16 34 H 0.06 0.94 6.83 -2.39 -0.02 0.92 16 35 H 0.06 0.76 8.11 -2.39 -0.02 0.74 16 36 H 0.09 0.67 8.03 -2.38 -0.02 0.65 16 37 H 0.09 0.86 4.16 -2.39 -0.01 0.85 16 38 H 0.14 1.63 2.97 -2.38 -0.01 1.62 16 39 H 0.09 1.42 7.84 -2.39 -0.02 1.41 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 2.26 6.16 -2.39 -0.01 2.25 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 46 H 0.02 0.71 7.83 -2.39 -0.02 0.69 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.05 2.98 6.10 -2.39 -0.01 2.96 16 49 H 0.00 0.06 7.83 -2.38 -0.02 0.04 16 50 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 51 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 52 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 53 H 0.08 2.70 7.06 -2.39 -0.02 2.68 16 Total: -1.00 -73.87 387.82 4.43 -69.44 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.89 Total: 17.83 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.75 Total: 6.21 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -3.90 Total: -106.99 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.34 Total: -34.45 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.87 4.43 -69.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098619984.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.949 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds