Wall clock time and date at job start Tue Mar 31 2020 21:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00047 * 2 1 4 4 C 1.52998 * 109.46971 * 5.21880 * 3 2 1 5 5 C 1.53004 * 109.47197 * 245.21878 * 3 2 1 6 6 C 1.50695 * 109.47201 * 125.21907 * 3 2 1 7 7 O 1.21282 * 120.00254 * 245.50534 * 6 3 2 8 8 N 1.34777 * 119.99996 * 65.50518 * 6 3 2 9 9 C 1.47161 * 120.98871 * 355.21067 * 8 6 3 10 10 C 1.53304 * 108.36644 * 230.62804 * 9 8 6 11 11 H 1.08997 * 109.51311 * 67.57148 * 10 9 8 12 12 C 1.53007 * 109.50832 * 187.71987 * 10 9 8 13 13 O 1.42969 * 109.22953 * 307.64232 * 10 9 8 14 14 C 1.42894 * 114.21145 * 62.49252 * 13 10 9 15 15 C 1.52979 * 109.56433 * 57.49042 * 14 13 10 16 16 C 1.53187 * 109.35715 * 59.05429 * 15 14 13 17 17 N 1.46934 * 108.77613 * 54.56697 * 16 15 14 18 18 C 1.36937 * 120.64239 * 126.35614 * 17 16 15 19 19 H 1.08001 * 119.99572 * 214.87158 * 18 17 16 20 20 C 1.38809 * 120.00008 * 34.85809 * 18 17 16 21 21 N 1.31622 * 120.00458 * 5.18980 * 20 18 17 22 22 Si 1.86803 * 119.99629 * 185.18309 * 20 18 17 23 23 H 1.48497 * 109.46951 * 90.00943 * 22 20 18 24 24 H 1.48507 * 109.46875 * 210.00446 * 22 20 18 25 25 H 1.48492 * 109.47397 * 330.00064 * 22 20 18 26 26 C 1.46920 * 118.71529 * 306.32839 * 17 16 15 27 27 C 1.52996 * 109.54493 * 177.79404 * 14 13 10 28 28 C 1.47155 * 120.98883 * 175.23466 * 8 6 3 29 29 H 1.08003 * 119.99657 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00020 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00353 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47004 * 175.02048 * 4 3 2 33 33 H 1.09002 * 109.46919 * 295.01736 * 4 3 2 34 34 H 1.09002 * 109.47129 * 55.01939 * 4 3 2 35 35 H 1.08998 * 109.47237 * 305.06966 * 5 3 2 36 36 H 1.09003 * 109.46690 * 65.06131 * 5 3 2 37 37 H 1.08998 * 109.47015 * 185.06592 * 5 3 2 38 38 H 1.08996 * 109.68325 * 350.34822 * 9 8 6 39 39 H 1.09002 * 109.68248 * 110.90828 * 9 8 6 40 40 H 1.08999 * 109.47069 * 59.99677 * 12 10 9 41 41 H 1.08994 * 109.47204 * 179.97438 * 12 10 9 42 42 H 1.09002 * 109.46824 * 299.99940 * 12 10 9 43 43 H 1.09005 * 109.48749 * 179.01910 * 15 14 13 44 44 H 1.09011 * 109.49025 * 299.08406 * 15 14 13 45 45 H 1.09004 * 109.58278 * 294.77994 * 16 15 14 46 46 H 1.09001 * 109.58954 * 174.35689 * 16 15 14 47 47 H 0.97001 * 120.00280 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58646 * 293.89286 * 26 17 16 49 49 H 1.08999 * 109.59044 * 173.46788 * 26 17 16 50 50 H 1.08993 * 109.49370 * 60.90624 * 27 14 13 51 51 H 1.09006 * 109.48913 * 180.97903 * 27 14 13 52 52 H 1.08994 * 109.67440 * 249.22146 * 28 8 6 53 53 H 1.08994 * 109.67514 * 9.72920 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0745 2.4650 0.1312 5 6 2.8422 1.4445 -1.3097 6 6 3.0243 1.3305 1.1607 7 8 2.8675 2.1285 2.0604 8 7 4.0578 0.4663 1.1990 9 6 4.2099 -0.5790 0.1743 10 6 4.4159 -1.9231 0.8823 11 1 3.5006 -2.2044 1.4029 12 6 4.7679 -2.9958 -0.1504 13 8 5.4832 -1.7998 1.8255 14 6 5.2349 -0.8587 2.8717 15 6 3.9563 -1.2465 3.6167 16 6 4.1143 -2.6553 4.1972 17 7 5.3295 -2.6932 5.0223 18 6 5.2787 -3.1275 6.3200 19 1 5.9177 -2.6775 7.0654 20 6 4.4057 -4.1458 6.6774 21 7 3.7013 -4.7636 5.7530 22 14 4.2308 -4.6396 8.4705 23 1 3.1559 -3.8337 9.1032 24 1 3.8838 -6.0811 8.5553 25 1 5.5134 -4.3969 9.1782 26 6 6.6002 -2.2568 4.4280 27 6 6.4152 -0.8522 3.8451 28 6 5.0676 0.5396 2.2669 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.6236 3.4024 0.2202 33 1 0.4364 2.5001 -0.7519 34 1 0.4588 2.3189 1.0188 35 1 3.4815 0.5724 -1.4469 36 1 2.1425 1.5165 -2.1424 37 1 3.4571 2.3437 -1.2728 38 1 3.3119 -0.6224 -0.4419 39 1 5.0746 -0.3570 -0.4511 40 1 5.6845 -2.7143 -0.6688 41 1 4.9147 -3.9510 0.3536 42 1 3.9557 -3.0862 -0.8717 43 1 3.7775 -0.5378 4.4254 44 1 3.1135 -1.2302 2.9255 45 1 4.2012 -3.3773 3.3852 46 1 3.2473 -2.8965 4.8122 47 1 3.0915 -5.4755 6.0027 48 1 6.8886 -2.9465 3.6347 49 1 7.3742 -2.2351 5.1952 50 1 7.3210 -0.5556 3.3164 51 1 6.2172 -0.1468 4.6521 52 1 6.0174 0.8758 1.8514 53 1 4.7369 1.2360 3.0374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098619985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:27 Heat of formation + Delta-G solvation = -39.475162 kcal Electronic energy + Delta-G solvation = -32512.201410 eV Core-core repulsion = 28577.983432 eV Total energy + Delta-G solvation = -3934.217979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.21639 -40.48383 -37.99575 -37.50783 -35.77384 -35.10009 -33.20012 -31.94678 -31.72370 -31.19101 -29.08739 -28.08262 -27.36199 -26.22938 -24.53934 -24.16566 -23.10582 -22.22684 -21.04852 -20.40841 -19.78050 -18.89125 -17.80088 -17.54547 -17.11651 -16.96360 -16.53700 -16.28034 -15.83108 -15.76181 -15.30613 -15.27539 -14.98138 -14.90856 -14.81690 -14.38251 -13.90426 -13.49708 -13.42090 -13.34773 -13.25098 -13.15062 -12.99666 -12.94125 -12.88349 -12.82170 -12.69444 -12.63111 -12.52831 -12.24610 -12.17718 -12.00527 -11.98429 -11.75656 -11.65089 -11.35460 -11.26619 -10.83845 -10.76644 -10.56594 -10.23525 -9.51182 -8.57175 -7.88052 -5.43463 1.15283 1.44283 1.45031 1.54449 1.62505 1.87815 2.47972 2.69770 3.27390 3.35500 3.58003 3.65653 3.68138 3.81608 3.85209 3.91930 3.93718 4.07497 4.10035 4.19958 4.32189 4.39275 4.43456 4.47212 4.60105 4.65773 4.68222 4.69047 4.73320 4.78435 4.84216 4.87044 4.89574 4.93641 4.95561 5.02021 5.03662 5.11236 5.14341 5.22646 5.25576 5.32244 5.35612 5.37874 5.47109 5.62268 5.63238 5.71389 5.74209 6.30417 6.35599 6.42506 7.05648 7.15684 7.83929 8.40078 9.17479 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.003664 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.206675 B = 7639.281150 C = 7966.248647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C -0.048 4.048 4 C -0.127 4.127 5 C -0.146 4.146 6 C 0.521 3.479 7 O -0.582 6.582 8 N -0.606 5.606 9 C 0.067 3.933 10 C 0.060 3.940 11 H 0.042 0.958 12 C -0.136 4.136 13 O -0.371 6.371 14 C 0.127 3.873 15 C -0.143 4.143 16 C 0.199 3.801 17 N -0.609 5.609 18 C -0.268 4.268 19 H 0.064 0.936 20 C -0.045 4.045 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.266 1.266 26 C 0.151 3.849 27 C -0.110 4.110 28 C 0.095 3.905 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.101 0.899 43 H 0.043 0.957 44 H 0.051 0.949 45 H -0.002 1.002 46 H 0.043 0.957 47 H 0.250 0.750 48 H 0.017 0.983 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.070 0.930 52 H 0.092 0.908 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 10.965 -20.154 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C -0.052 4.052 4 C -0.185 4.185 5 C -0.203 4.203 6 C 0.311 3.689 7 O -0.462 6.462 8 N -0.338 5.338 9 C -0.054 4.054 10 C 0.002 3.998 11 H 0.060 0.940 12 C -0.193 4.193 13 O -0.291 6.291 14 C 0.087 3.913 15 C -0.182 4.182 16 C 0.073 3.927 17 N -0.333 5.333 18 C -0.398 4.398 19 H 0.082 0.918 20 C -0.241 4.241 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.191 1.191 26 C 0.025 3.975 27 C -0.150 4.150 28 C -0.028 4.028 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.139 0.861 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.016 0.984 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.035 0.965 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.089 0.911 52 H 0.110 0.890 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.914 11.154 -19.669 22.693 hybrid contribution -0.536 -0.542 1.598 1.771 sum -2.451 10.612 -18.071 21.099 Atomic orbital electron populations 1.24289 0.95708 1.03525 0.96883 1.22944 0.96675 0.96366 1.03719 1.19907 0.94755 0.96423 0.94071 1.21748 0.98148 0.96012 1.02551 1.22170 1.00684 1.03576 0.93899 1.21204 0.80849 0.79248 0.87579 1.90659 1.74178 1.41075 1.40300 1.48135 1.25471 1.32401 1.27776 1.23261 1.05823 0.85778 0.90577 1.22664 0.90811 0.95793 0.90520 0.93980 1.21717 1.03938 0.96517 0.97157 1.87981 1.41293 1.61904 1.37902 1.21505 0.95233 0.87498 0.87100 1.22456 0.97431 0.99643 0.98710 1.20271 0.89820 0.90686 0.91909 1.44199 1.03068 1.75993 1.10052 1.19511 1.21928 1.12353 0.86047 0.91805 1.26030 1.00357 0.96181 1.01532 1.70129 1.29328 1.25430 1.33170 0.85249 0.78205 0.76773 0.80092 1.21314 1.21767 1.19109 1.20894 0.88048 0.93127 0.95398 1.21898 0.97039 0.98876 0.97141 1.22240 0.92359 0.97147 0.91071 0.86909 0.86802 0.86065 0.92739 0.88900 0.93325 0.89720 0.89036 0.92123 0.84967 0.88289 0.90339 0.93447 0.88063 0.93786 0.93005 0.98351 0.93807 0.94120 0.96536 0.92642 0.88962 0.91103 0.88986 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 13.69 67.78 0.93 -1.80 16 2 C -0.18 -3.27 7.83 25.65 0.20 -3.07 16 3 C -0.05 -0.95 0.73 -53.67 -0.04 -0.99 16 4 C -0.13 -2.41 6.44 71.98 0.46 -1.95 16 5 C -0.15 -1.89 8.07 71.98 0.58 -1.31 16 6 C 0.52 14.75 6.48 87.66 0.57 15.31 16 7 O -0.58 -21.48 15.45 -3.04 -0.05 -21.53 16 8 N -0.61 -15.94 2.51 -817.40 -2.05 -18.00 16 9 C 0.07 1.33 3.63 86.36 0.31 1.65 16 10 C 0.06 1.60 3.02 30.70 0.09 1.69 16 11 H 0.04 1.33 6.29 -2.39 -0.02 1.32 16 12 C -0.14 -2.77 9.57 71.98 0.69 -2.08 16 13 O -0.37 -12.50 8.64 -148.98 -1.29 -13.79 16 14 C 0.13 4.40 0.68 -10.72 -0.01 4.40 16 15 C -0.14 -6.02 4.33 30.65 0.13 -5.89 16 16 C 0.20 10.26 4.99 86.36 0.43 10.69 16 17 N -0.61 -32.25 2.98 -699.09 -2.08 -34.33 16 18 C -0.27 -15.35 9.56 84.03 0.80 -14.55 16 19 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 20 C -0.05 -2.62 5.15 84.86 0.44 -2.18 16 21 N -0.94 -56.90 11.01 21.65 0.24 -56.66 16 22 Si 0.97 46.12 29.56 68.60 2.03 48.15 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.15 6.59 6.28 86.36 0.54 7.13 16 27 C -0.11 -3.87 5.10 30.66 0.16 -3.71 16 28 C 0.09 2.83 5.31 86.34 0.46 3.29 16 29 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.11 1.65 5.72 -2.91 -0.02 1.63 16 31 H 0.12 2.14 5.82 -2.91 -0.02 2.13 16 32 H 0.05 1.13 8.04 -2.39 -0.02 1.11 16 33 H 0.09 1.18 7.56 -2.39 -0.02 1.16 16 34 H 0.05 1.09 7.44 -2.39 -0.02 1.07 16 35 H 0.08 0.91 4.66 -2.39 -0.01 0.90 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.13 2.00 2.68 -2.39 -0.01 1.99 16 39 H 0.10 1.57 8.02 -2.39 -0.02 1.55 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.05 2.10 6.16 -2.38 -0.01 2.09 16 45 H 0.00 -0.09 7.83 -2.38 -0.02 -0.11 16 46 H 0.04 2.58 6.20 -2.39 -0.01 2.57 16 47 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 48 H 0.02 0.76 7.83 -2.39 -0.02 0.74 16 49 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 50 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 51 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 52 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 53 H 0.08 2.67 7.06 -2.39 -0.02 2.66 16 Total: -1.00 -74.14 389.02 4.43 -69.71 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.89 Total: 19.80 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.75 Total: 6.64 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.90 Total: -108.98 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.33 Total: -35.32 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.14 4.43 -69.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098619985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.236 kcal (2) G-P(sol) polarization free energy of solvation -74.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds