Wall clock time and date at job start Tue Mar 31 2020 21:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00019 * 2 1 4 4 H 1.09001 * 109.49229 * 359.97001 * 3 2 1 5 5 O 1.42909 * 109.47599 * 239.94192 * 3 2 1 6 6 C 1.42906 * 114.09249 * 178.85543 * 5 3 2 7 7 C 1.53098 * 109.41200 * 61.16414 * 6 5 3 8 8 C 1.53178 * 109.16385 * 302.38482 * 7 6 5 9 9 C 1.53092 * 109.48349 * 120.00417 * 3 2 1 10 10 H 1.09000 * 109.57752 * 57.64652 * 9 3 2 11 11 C 1.50702 * 109.51982 * 297.49614 * 9 3 2 12 12 O 1.21286 * 119.99871 * 0.31215 * 11 9 3 13 13 N 1.34778 * 120.00294 * 180.31229 * 11 9 3 14 14 C 1.47432 * 125.64292 * 0.04312 * 13 11 9 15 15 C 1.55124 * 104.93692 * 203.96487 * 14 13 11 16 16 H 1.09000 * 110.93690 * 81.21791 * 15 14 13 17 17 C 1.53000 * 111.15891 * 205.13156 * 15 14 13 18 18 C 1.55158 * 101.48824 * 323.22282 * 15 14 13 19 19 H 1.08998 * 110.71537 * 276.83233 * 18 15 14 20 20 C 1.52999 * 110.71708 * 153.73712 * 18 15 14 21 21 C 1.53006 * 109.46623 * 177.43998 * 20 18 15 22 22 N 1.46500 * 109.46998 * 179.97438 * 21 20 18 23 23 C 1.36931 * 120.00396 * 180.02562 * 22 21 20 24 24 H 1.08003 * 119.99774 * 359.97438 * 23 22 21 25 25 C 1.38806 * 120.00545 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99833 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00256 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47110 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47258 * 119.99748 * 27 25 23 30 30 H 1.48508 * 109.46891 * 239.99707 * 27 25 23 31 31 C 1.47017 * 125.65270 * 179.97438 * 13 11 9 32 32 H 1.08000 * 120.00392 * 180.02562 * 1 2 3 33 33 H 1.07998 * 119.99842 * 359.97438 * 1 2 3 34 34 H 1.08004 * 119.99644 * 180.02562 * 2 1 3 35 35 H 1.09000 * 109.48410 * 301.17841 * 6 5 3 36 36 H 1.08997 * 109.47800 * 181.14128 * 6 5 3 37 37 H 1.09001 * 109.52037 * 182.48146 * 7 6 5 38 38 H 1.08999 * 109.57569 * 62.32790 * 7 6 5 39 39 H 1.08999 * 109.54435 * 297.12056 * 8 7 6 40 40 H 1.08993 * 109.61434 * 176.89111 * 8 7 6 41 41 H 1.08996 * 110.36511 * 322.92632 * 14 13 11 42 42 H 1.09002 * 110.36507 * 85.14618 * 14 13 11 43 43 H 1.09000 * 109.46825 * 172.17316 * 17 15 14 44 44 H 1.09007 * 109.46961 * 292.17016 * 17 15 14 45 45 H 1.08993 * 109.47349 * 52.16974 * 17 15 14 46 46 H 1.09000 * 109.47486 * 57.44169 * 20 18 15 47 47 H 1.09001 * 109.47362 * 297.43447 * 20 18 15 48 48 H 1.08993 * 109.46955 * 300.00075 * 21 20 18 49 49 H 1.09000 * 109.47050 * 59.99904 * 21 20 18 50 50 H 0.97010 * 119.99909 * 359.97438 * 22 21 20 51 51 H 0.97001 * 119.99731 * 180.02562 * 26 25 23 52 52 H 1.09004 * 109.87932 * 59.56050 * 31 13 11 53 53 H 1.08999 * 109.88179 * 298.39800 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3555 2.1338 -0.0005 5 8 2.8861 1.3803 -1.1661 6 6 3.6286 2.5961 -1.2788 7 6 4.5718 2.7293 -0.0803 8 6 3.7512 2.6876 1.2125 9 6 2.9438 1.3864 1.2498 10 1 3.6248 0.5356 1.2729 11 6 2.0740 1.3686 2.4804 12 8 0.8686 1.2922 2.3700 13 7 2.6356 1.4377 3.7037 14 6 4.0802 1.5344 3.9816 15 6 4.2493 0.9752 5.4186 16 1 4.2727 -0.1145 5.4123 17 6 5.5012 1.5445 6.0890 18 6 2.9620 1.4999 6.1078 19 1 3.0971 2.5271 6.4462 20 6 2.5661 0.5947 7.2761 21 6 1.3328 1.1723 7.9734 22 7 0.9533 0.3052 9.0917 23 6 -0.1296 0.6226 9.8673 24 1 -0.7038 1.5123 9.6549 25 6 -0.4889 -0.1986 10.9272 26 7 0.2112 -1.2826 11.1864 27 14 -1.9658 0.2348 11.9857 28 1 -2.5775 1.4939 11.4901 29 1 -2.9642 -0.8622 11.9154 30 1 -1.5294 0.4175 13.3934 31 6 1.9091 1.4305 4.9818 32 1 -0.5401 -0.9353 0.0004 33 1 -0.5400 0.9353 0.0004 34 1 1.8499 -0.9354 -0.0004 35 1 2.9411 3.4417 -1.2960 36 1 4.2112 2.5822 -2.2000 37 1 5.1071 3.6768 -0.1415 38 1 5.2865 1.9063 -0.0848 39 1 3.0716 3.5393 1.2406 40 1 4.4203 2.7263 2.0720 41 1 4.6446 0.9316 3.2701 42 1 4.4059 2.5738 3.9395 43 1 5.5196 1.2461 7.1372 44 1 6.3890 1.1606 5.5864 45 1 5.4871 2.6322 6.0211 46 1 3.3910 0.5362 7.9862 47 1 2.3377 -0.4031 6.9014 48 1 1.5611 2.1700 8.3480 49 1 0.5079 1.2307 7.2633 50 1 1.4688 -0.4941 9.2823 51 1 -0.0401 -1.8567 11.9268 52 1 1.3288 0.5123 5.0731 53 1 1.2487 2.2959 5.0376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104208061.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:55 Heat of formation + Delta-G solvation = -81.909208 kcal Electronic energy + Delta-G solvation = -30045.452563 eV Core-core repulsion = 26109.394506 eV Total energy + Delta-G solvation = -3936.058057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.80170 -40.23516 -38.88769 -36.90758 -35.24592 -34.97476 -34.29295 -33.41717 -31.87135 -31.21388 -28.64441 -27.38326 -26.21763 -25.98941 -24.97339 -23.86139 -22.17633 -21.54125 -21.15178 -20.91663 -20.30781 -19.18363 -18.29914 -17.63062 -17.15510 -16.85632 -16.65444 -16.46408 -15.86671 -15.67035 -15.47882 -15.30893 -15.11342 -14.98211 -14.81133 -14.50815 -14.23239 -14.09709 -13.78369 -13.67159 -13.41204 -13.20974 -13.09636 -12.90538 -12.80537 -12.63032 -12.56702 -12.48592 -12.29928 -12.10025 -12.06345 -11.91111 -11.88947 -11.66380 -11.53932 -11.40547 -11.18486 -10.96153 -10.87832 -10.67342 -10.16160 -9.67174 -9.03182 -7.98495 -5.27571 1.26491 1.44852 1.46080 1.56244 1.57591 1.88799 2.53396 2.90238 3.33258 3.35265 3.49986 3.55289 3.61998 3.69707 3.75174 3.96117 4.03189 4.11329 4.12533 4.20303 4.24619 4.28961 4.34791 4.41985 4.49622 4.54514 4.56923 4.64522 4.65474 4.70851 4.77004 4.79062 4.84873 4.89346 4.91181 4.93505 5.02274 5.03694 5.06718 5.16798 5.23690 5.28281 5.29773 5.33718 5.42139 5.47002 5.54535 5.62991 5.80739 6.20964 6.24691 6.49570 7.10205 7.30366 8.06489 8.29660 9.25339 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.002319 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.477896 B =12068.803949 C =13263.548979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.166 4.166 3 C 0.146 3.854 4 H 0.052 0.948 5 O -0.388 6.388 6 C 0.046 3.954 7 C -0.146 4.146 8 C -0.119 4.119 9 C -0.120 4.120 10 H 0.117 0.883 11 C 0.526 3.474 12 O -0.573 6.573 13 N -0.615 5.615 14 C 0.101 3.899 15 C -0.095 4.095 16 H 0.081 0.919 17 C -0.136 4.136 18 C -0.079 4.079 19 H 0.098 0.902 20 C -0.100 4.100 21 C 0.150 3.850 22 N -0.748 5.748 23 C -0.247 4.247 24 H 0.073 0.927 25 C -0.077 4.077 26 N -0.969 5.969 27 Si 0.974 3.026 28 H -0.267 1.267 29 H -0.293 1.293 30 H -0.289 1.289 31 C 0.114 3.886 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.053 0.947 48 H 0.023 0.977 49 H 0.010 0.990 50 H 0.374 0.626 51 H 0.252 0.748 52 H 0.044 0.956 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.695 9.592 -26.183 32.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.088 3.912 4 H 0.070 0.930 5 O -0.307 6.307 6 C -0.030 4.030 7 C -0.183 4.183 8 C -0.156 4.156 9 C -0.141 4.141 10 H 0.135 0.865 11 C 0.316 3.684 12 O -0.452 6.452 13 N -0.348 5.348 14 C -0.020 4.020 15 C -0.114 4.114 16 H 0.099 0.901 17 C -0.194 4.194 18 C -0.098 4.098 19 H 0.116 0.884 20 C -0.138 4.138 21 C 0.024 3.976 22 N -0.391 5.391 23 C -0.379 4.379 24 H 0.091 0.909 25 C -0.269 4.269 26 N -0.620 5.620 27 Si 0.803 3.197 28 H -0.192 1.192 29 H -0.220 1.220 30 H -0.216 1.216 31 C -0.009 4.009 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.041 0.959 49 H 0.028 0.972 50 H 0.206 0.794 51 H 0.061 0.939 52 H 0.062 0.938 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.885 9.542 -26.431 32.279 hybrid contribution -1.317 -0.315 1.301 1.878 sum 14.568 9.226 -25.129 30.477 Atomic orbital electron populations 1.23847 0.95940 1.02026 0.96872 1.22585 0.95857 0.97254 1.02696 1.20698 0.90293 0.96054 0.84112 0.93045 1.87982 1.60387 1.40395 1.41969 1.22907 0.93948 0.86098 1.00073 1.22177 0.98305 1.04827 0.93020 1.21795 0.98899 0.94103 1.00815 1.21852 0.97960 1.02898 0.91416 0.86533 1.20618 0.88293 0.75482 0.84033 1.90722 1.16670 1.51198 1.86618 1.48568 1.09328 1.72232 1.04688 1.22828 0.79575 1.02701 0.96945 1.22450 0.94566 1.00828 0.93517 0.90099 1.21680 0.95650 1.01552 1.00506 1.22170 0.94312 1.00738 0.92618 0.88419 1.21564 0.97161 0.98380 0.96698 1.20853 0.95014 0.93358 0.88406 1.42615 1.33925 1.28552 1.34009 1.19665 1.04722 1.06163 1.07321 0.90922 1.25600 1.02649 0.97641 1.01030 1.69821 1.43048 1.16415 1.32705 0.85061 0.78824 0.77479 0.78331 1.19192 1.21973 1.21592 1.21931 0.95266 1.00680 0.83052 0.87297 0.89265 0.86568 0.93110 0.86735 0.88031 0.89854 0.92076 0.88246 0.88333 0.88714 0.92675 0.90462 0.91255 0.90798 0.92858 0.95930 0.97162 0.79414 0.93901 0.93758 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 13.11 67.78 0.89 -2.67 16 2 C -0.17 -3.82 8.04 25.65 0.21 -3.61 16 3 C 0.15 3.06 2.17 29.88 0.06 3.13 16 4 H 0.05 1.23 7.69 -2.39 -0.02 1.21 16 5 O -0.39 -7.37 10.39 -148.98 -1.55 -8.91 16 6 C 0.05 0.53 6.84 72.01 0.49 1.02 16 7 C -0.15 -1.14 6.14 30.69 0.19 -0.95 16 8 C -0.12 -1.35 5.07 30.71 0.16 -1.20 16 9 C -0.12 -2.09 1.57 -11.45 -0.02 -2.11 16 10 H 0.12 1.76 7.85 -2.39 -0.02 1.74 16 11 C 0.53 13.05 6.96 87.66 0.61 13.66 16 12 O -0.57 -19.12 14.34 -3.05 -0.04 -19.16 16 13 N -0.62 -13.49 3.32 -811.35 -2.70 -16.19 16 14 C 0.10 1.34 4.62 86.93 0.40 1.74 16 15 C -0.09 -1.50 3.10 -9.33 -0.03 -1.53 16 16 H 0.08 1.42 8.05 -2.39 -0.02 1.41 16 17 C -0.14 -1.62 9.32 71.98 0.67 -0.95 16 18 C -0.08 -1.78 2.42 -9.61 -0.02 -1.80 16 19 H 0.10 2.03 8.04 -2.39 -0.02 2.01 16 20 C -0.10 -3.05 4.72 30.60 0.14 -2.91 16 21 C 0.15 6.10 6.13 86.38 0.53 6.63 16 22 N -0.75 -39.39 5.60 -343.46 -1.92 -41.31 16 23 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 24 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 25 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 26 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 27 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 31 C 0.11 3.05 5.73 86.73 0.50 3.55 16 32 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.09 2.22 7.83 -2.91 -0.02 2.20 16 34 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 0.77 5.11 -2.39 -0.01 0.76 16 41 H 0.10 0.90 7.33 -2.39 -0.02 0.89 16 42 H 0.09 0.88 6.98 -2.39 -0.02 0.87 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 46 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.05 1.75 8.01 -2.39 -0.02 1.73 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.01 0.44 7.58 -2.39 -0.02 0.42 16 50 H 0.37 20.70 7.67 -92.70 -0.71 19.99 16 51 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 52 H 0.04 1.44 7.73 -2.38 -0.02 1.42 16 53 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -74.86 410.62 2.34 -72.52 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.16 Total: 29.50 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 6.09 Total: -5.55 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.34 Total: -117.67 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.59 Total: -28.08 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -74.86 2.34 -72.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104208061.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.388 kcal (2) G-P(sol) polarization free energy of solvation -74.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds