Wall clock time and date at job start Tue Mar 31 2020 21:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34781 * 127.83672 * 219.60536 * 5 4 2 7 7 O 1.21276 * 120.00303 * 179.97438 * 6 5 4 8 8 C 1.50704 * 119.99564 * 359.97438 * 6 5 4 9 9 H 1.08990 * 110.39101 * 302.58931 * 8 6 5 10 10 O 1.44638 * 110.43026 * 180.02562 * 8 6 5 11 11 C 1.44629 * 104.50545 * 198.50201 * 10 8 6 12 12 C 1.54554 * 104.48196 * 42.74878 * 11 10 8 13 13 H 1.08995 * 112.34313 * 213.00597 * 12 11 10 14 14 C 1.54125 * 108.76002 * 87.53396 * 12 11 10 15 15 C 1.54827 * 104.37548 * 225.08857 * 14 12 11 16 16 C 1.54831 * 102.72950 * 38.27497 * 15 14 12 17 17 C 1.54126 * 104.36832 * 321.72243 * 16 15 14 18 18 H 1.08991 * 112.71055 * 260.17274 * 17 16 15 19 19 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 20 20 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 21 21 H 1.09001 * 110.34452 * 359.97438 * 20 2 1 22 22 C 1.53006 * 110.34387 * 237.84933 * 20 2 1 23 23 C 1.52998 * 109.47517 * 175.00010 * 22 20 2 24 24 N 1.46488 * 109.47281 * 179.97438 * 23 22 20 25 25 C 1.36943 * 120.00338 * 179.97438 * 24 23 22 26 26 H 1.08005 * 119.99616 * 359.97438 * 25 24 23 27 27 C 1.38809 * 120.00008 * 179.97438 * 25 24 23 28 28 N 1.31612 * 120.00350 * 0.02562 * 27 25 24 29 29 Si 1.86801 * 119.99662 * 179.97438 * 27 25 24 30 30 H 1.48502 * 109.47415 * 0.02562 * 29 27 25 31 31 H 1.48504 * 109.47144 * 120.00155 * 29 27 25 32 32 H 1.48499 * 109.47244 * 240.00354 * 29 27 25 33 33 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 34 34 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 35 35 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 36 36 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 37 37 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 38 38 H 1.09008 * 110.43152 * 284.00007 * 11 10 8 39 39 H 1.09002 * 110.43535 * 161.50558 * 11 10 8 40 40 H 1.09003 * 110.45173 * 343.80995 * 14 12 11 41 41 H 1.08997 * 110.45576 * 106.36507 * 14 12 11 42 42 H 1.09000 * 110.75964 * 156.58476 * 15 14 12 43 43 H 1.09003 * 110.75784 * 279.78039 * 15 14 12 44 44 H 1.09005 * 110.45196 * 203.00609 * 16 15 14 45 45 H 1.08996 * 110.45554 * 80.44980 * 16 15 14 46 46 H 1.08998 * 110.41105 * 201.63246 * 19 5 4 47 47 H 1.09004 * 110.40870 * 79.19127 * 19 5 4 48 48 H 1.09004 * 109.46505 * 294.99417 * 22 20 2 49 49 H 1.08998 * 109.46960 * 54.99627 * 22 20 2 50 50 H 1.09009 * 109.46860 * 299.99719 * 23 22 20 51 51 H 1.09002 * 109.46935 * 59.99201 * 23 22 20 52 52 H 0.97002 * 120.00509 * 359.97438 * 24 23 22 53 53 H 0.97000 * 120.00312 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4462 -1.6624 -1.3511 7 8 5.3410 -2.2688 -0.8013 8 6 4.6504 -1.1133 -2.7397 9 1 3.8962 -1.5097 -3.4194 10 8 5.9793 -1.4273 -3.2165 11 6 6.2014 -0.5021 -4.3057 12 6 5.6543 0.8464 -3.7850 13 1 5.2242 1.4541 -4.5810 14 6 6.7772 1.5750 -3.0210 15 6 6.0929 2.0902 -1.7312 16 6 5.1371 0.9286 -1.3647 17 6 4.6013 0.4315 -2.7217 18 1 3.6074 0.8170 -2.9484 19 6 2.8824 -1.9401 0.6333 20 6 2.0663 -0.7703 1.2244 21 1 1.2398 -1.1484 1.8261 22 6 2.9671 0.1335 2.0687 23 6 3.3867 -0.6083 3.3394 24 7 4.2496 0.2569 4.1474 25 6 4.7505 -0.1960 5.3388 26 1 4.5091 -1.1909 5.6828 27 6 5.5686 0.6237 6.1041 28 7 5.8624 1.8362 5.6851 29 14 6.2513 0.0061 7.7296 30 1 5.7753 -1.3795 7.9720 31 1 7.7354 0.0176 7.6795 32 1 5.7863 0.8891 8.8292 33 1 -0.3633 0.5029 0.8962 34 1 -0.3634 0.5247 -0.8837 35 1 -0.3634 -1.0276 -0.0126 36 1 1.3271 -1.4869 -1.5790 37 1 2.3421 -0.0790 -2.0198 38 1 5.6518 -0.8189 -5.1922 39 1 7.2660 -0.4215 -4.5255 40 1 7.5818 0.8822 -2.7745 41 1 7.1587 2.4096 -3.6091 42 1 6.8272 2.2501 -0.9417 43 1 5.5350 3.0055 -1.9291 44 1 4.3191 1.2905 -0.7418 45 1 5.6817 0.1334 -0.8557 46 1 3.7692 -2.1288 1.2384 47 1 2.2675 -2.8377 0.5681 48 1 3.8541 0.4008 1.4944 49 1 2.4228 1.0383 2.3391 50 1 2.4996 -0.8757 3.9137 51 1 3.9309 -1.5132 3.0689 52 1 4.4662 1.1506 3.8387 53 1 6.4338 2.4091 6.2202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104430911.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:07 Heat of formation + Delta-G solvation = -98.245612 kcal Electronic energy + Delta-G solvation = -31340.651896 eV Core-core repulsion = 27403.885440 eV Total energy + Delta-G solvation = -3936.766456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.14422 -40.53186 -38.92038 -36.91026 -36.66995 -34.59286 -33.51663 -32.24294 -31.54682 -30.57339 -28.59225 -27.54444 -26.93811 -26.06070 -24.52063 -23.89072 -22.32937 -21.80430 -20.91396 -20.73139 -20.20604 -19.18936 -18.08156 -17.85202 -17.27529 -16.87087 -16.68961 -16.20188 -15.87475 -15.62538 -15.50729 -15.34279 -15.32494 -15.24622 -15.02032 -14.42006 -14.19938 -13.80802 -13.69745 -13.35307 -13.22243 -13.06134 -12.90133 -12.81117 -12.62307 -12.43714 -12.35195 -12.32711 -12.16837 -12.11881 -12.03767 -11.93443 -11.87826 -11.77255 -11.57398 -11.54966 -11.38023 -11.23477 -10.96907 -10.94159 -10.58740 -9.74891 -9.05176 -8.00358 -5.29775 1.42042 1.44336 1.51365 1.54252 1.71691 2.51561 2.99032 3.16656 3.32948 3.35617 3.56797 3.57834 3.65807 3.71855 3.85116 4.05508 4.13177 4.15881 4.24044 4.26745 4.30763 4.36137 4.39236 4.46226 4.48420 4.52810 4.58767 4.62924 4.64818 4.71079 4.75070 4.81113 4.81883 4.83750 4.88258 4.94039 4.96824 5.02471 5.11341 5.16461 5.20077 5.21164 5.27813 5.30552 5.38041 5.41347 5.42055 5.44577 5.61449 5.76247 6.22404 6.52185 7.10571 7.27761 8.03627 8.26974 9.23652 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003374 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.983127 B = 8295.820974 C = 9522.385935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.080 0.920 4 C 0.097 3.903 5 N -0.616 5.616 6 C 0.535 3.465 7 O -0.589 6.589 8 C 0.065 3.935 9 H 0.126 0.874 10 O -0.385 6.385 11 C 0.037 3.963 12 C -0.111 4.111 13 H 0.136 0.864 14 C -0.117 4.117 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.102 4.102 18 H 0.140 0.860 19 C 0.103 3.897 20 C -0.084 4.084 21 H 0.104 0.896 22 C -0.100 4.100 23 C 0.150 3.850 24 N -0.748 5.748 25 C -0.250 4.250 26 H 0.073 0.927 27 C -0.075 4.075 28 N -0.969 5.969 29 Si 0.975 3.025 30 H -0.267 1.267 31 H -0.294 1.294 32 H -0.286 1.286 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.026 0.974 46 H 0.044 0.956 47 H 0.091 0.909 48 H 0.038 0.962 49 H 0.068 0.932 50 H 0.027 0.973 51 H 0.005 0.995 52 H 0.372 0.628 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.153 -0.234 -27.864 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.024 4.024 5 N -0.350 5.350 6 C 0.324 3.676 7 O -0.469 6.469 8 C 0.005 3.995 9 H 0.143 0.857 10 O -0.304 6.304 11 C -0.039 4.039 12 C -0.129 4.129 13 H 0.154 0.846 14 C -0.155 4.155 15 C -0.162 4.162 16 C -0.162 4.162 17 C -0.120 4.120 18 H 0.157 0.843 19 C -0.019 4.019 20 C -0.103 4.103 21 H 0.122 0.878 22 C -0.138 4.138 23 C 0.024 3.976 24 N -0.390 5.390 25 C -0.382 4.382 26 H 0.091 0.909 27 C -0.268 4.268 28 N -0.620 5.620 29 Si 0.803 3.197 30 H -0.191 1.191 31 H -0.221 1.221 32 H -0.213 1.213 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.057 0.943 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.023 0.977 52 H 0.204 0.796 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.408 -0.902 -27.428 30.118 hybrid contribution 1.255 -0.052 1.588 2.025 sum -11.153 -0.955 -25.840 28.160 Atomic orbital electron populations 1.21789 0.91710 1.02955 1.02911 1.22148 0.97682 0.99225 0.92347 0.90162 1.22973 0.85611 0.96402 0.97401 1.48902 1.13007 1.55646 1.17406 1.20395 0.80357 0.78777 0.88026 1.90733 1.43140 1.44278 1.68731 1.23093 0.88092 0.96531 0.91829 0.85702 1.89403 1.31717 1.58150 1.51117 1.23914 1.02819 0.87564 0.89571 1.23292 0.94793 0.97005 0.97819 0.84603 1.22416 0.97182 0.99992 0.95901 1.22488 0.98066 0.98170 0.97430 1.22427 0.99139 0.97882 0.96751 1.23326 1.02089 0.91293 0.95308 0.84277 1.22500 0.98540 0.97905 0.82977 1.22130 0.97298 0.94443 0.96457 0.87771 1.21609 0.98721 0.98732 0.94699 1.20878 0.92396 0.92878 0.91448 1.42601 1.58416 1.16004 1.22012 1.19687 1.22920 0.98625 0.96937 0.90945 1.25606 1.01555 0.96652 1.02941 1.69824 1.42523 1.09236 1.40424 0.85052 0.77396 0.77875 0.79328 1.19111 1.22074 1.21265 0.92558 0.90404 0.91429 0.88009 0.87876 0.89142 0.88480 0.93620 0.89123 0.93876 0.89087 0.91413 0.95522 0.93688 0.89063 0.94302 0.91322 0.95549 0.97745 0.79637 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.92 71.98 0.64 -0.70 16 2 C -0.09 -1.42 3.30 -9.89 -0.03 -1.45 16 3 H 0.08 1.31 7.71 -2.39 -0.02 1.29 16 4 C 0.10 1.27 6.34 86.54 0.55 1.81 16 5 N -0.62 -14.82 3.25 -807.96 -2.63 -17.45 16 6 C 0.53 16.46 5.10 87.66 0.45 16.91 16 7 O -0.59 -25.97 16.51 15.30 0.25 -25.72 16 8 C 0.07 1.41 2.88 30.38 0.09 1.50 16 9 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 10 O -0.38 -10.55 10.96 -130.67 -1.43 -11.98 16 11 C 0.04 0.59 6.85 72.51 0.50 1.09 16 12 C -0.11 -1.45 4.04 -9.10 -0.04 -1.48 16 13 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 14 C -0.12 -2.10 6.26 31.60 0.20 -1.90 16 15 C -0.12 -2.73 6.90 31.84 0.22 -2.51 16 16 C -0.12 -3.11 5.49 31.60 0.17 -2.94 16 17 C -0.10 -1.63 2.98 -9.09 -0.03 -1.66 16 18 H 0.14 1.12 6.55 -2.39 -0.02 1.11 16 19 C 0.10 2.76 6.44 86.54 0.56 3.32 16 20 C -0.08 -1.92 2.71 -9.89 -0.03 -1.94 16 21 H 0.10 2.10 7.71 -2.39 -0.02 2.09 16 22 C -0.10 -3.31 4.54 30.60 0.14 -3.17 16 23 C 0.15 6.52 6.11 86.38 0.53 7.04 16 24 N -0.75 -41.43 5.60 -343.46 -1.92 -43.35 16 25 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 26 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 27 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 28 N -0.97 -62.22 13.06 21.65 0.28 -61.93 16 29 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 30 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 31 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 32 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.07 0.57 8.13 -2.38 -0.02 0.55 16 36 H 0.10 0.85 7.85 -2.39 -0.02 0.83 16 37 H 0.10 0.86 5.17 -2.39 -0.01 0.84 16 38 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.10 1.49 7.74 -2.39 -0.02 1.47 16 40 H 0.04 1.06 7.57 -2.39 -0.02 1.04 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.03 0.95 6.14 -2.39 -0.01 0.94 16 46 H 0.04 1.64 6.14 -2.39 -0.01 1.63 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 1.46 8.13 -2.38 -0.02 1.44 16 49 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 51 H 0.00 0.22 6.66 -2.39 -0.02 0.20 16 52 H 0.37 21.74 7.67 -92.71 -0.71 21.03 16 53 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -86.56 401.67 1.98 -84.58 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.18 Total: 29.66 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 5.22 Total: -4.43 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -4.27 Total: -122.74 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.18 Total: -37.69 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -86.56 1.98 -84.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104430911.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.663 kcal (2) G-P(sol) polarization free energy of solvation -86.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds