Wall clock time and date at job start Tue Mar 31 2020 21:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.30596 * 2 1 4 4 C 1.54388 * 110.34007 * 237.82386 * 2 1 3 5 5 N 1.48315 * 104.53802 * 217.33520 * 4 2 1 6 6 C 1.34778 * 127.76759 * 219.51664 * 5 4 2 7 7 O 1.21281 * 119.99402 * 179.97438 * 6 5 4 8 8 C 1.50694 * 120.00325 * 359.93362 * 6 5 4 9 9 H 1.09004 * 110.75043 * 62.01848 * 8 6 5 10 10 C 1.55304 * 110.84852 * 298.54772 * 8 6 5 11 11 C 1.54951 * 100.94258 * 207.67625 * 10 8 6 12 12 O 1.43645 * 105.13506 * 36.44285 * 11 10 8 13 13 C 1.43239 * 109.97244 * 335.57330 * 12 11 10 14 14 H 1.09000 * 109.83321 * 121.22448 * 13 12 11 15 15 C 1.52999 * 109.83175 * 242.20110 * 13 12 11 16 16 C 1.53008 * 117.49653 * 6.87571 * 15 13 12 17 17 C 1.53002 * 117.49584 * 298.22187 * 15 13 12 18 18 C 1.48145 * 104.39219 * 39.46189 * 5 4 2 19 19 C 1.54287 * 110.34326 * 122.17851 * 2 1 3 20 20 H 1.08999 * 110.34526 * 359.97438 * 19 2 1 21 21 C 1.53003 * 110.33734 * 237.84431 * 19 2 1 22 22 C 1.53006 * 109.46910 * 174.99849 * 21 19 2 23 23 N 1.46489 * 109.47107 * 180.02562 * 22 21 19 24 24 C 1.36939 * 120.00159 * 180.02562 * 23 22 21 25 25 H 1.08003 * 119.99628 * 359.97438 * 24 23 22 26 26 C 1.38809 * 120.00007 * 179.97438 * 24 23 22 27 27 N 1.31621 * 120.00727 * 359.97438 * 26 24 23 28 28 Si 1.86801 * 119.99750 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.47366 * 60.00088 * 28 26 24 30 30 H 1.48507 * 109.47386 * 179.97438 * 28 26 24 31 31 H 1.48493 * 109.47354 * 299.99933 * 28 26 24 32 32 H 1.09001 * 109.47002 * 299.29704 * 1 2 3 33 33 H 1.08993 * 109.46955 * 59.30141 * 1 2 3 34 34 H 1.09000 * 109.47050 * 179.29970 * 1 2 3 35 35 H 1.09003 * 110.40960 * 336.04754 * 4 2 1 36 36 H 1.09003 * 110.40777 * 98.47685 * 4 2 1 37 37 H 1.09006 * 111.12594 * 325.59427 * 10 8 6 38 38 H 1.08997 * 111.12592 * 89.75431 * 10 8 6 39 39 H 1.08996 * 110.30666 * 155.35882 * 11 10 8 40 40 H 1.09000 * 110.30501 * 277.52475 * 11 10 8 41 41 H 1.08995 * 115.55194 * 152.54986 * 15 13 12 42 42 H 1.08999 * 117.49910 * 0.02562 * 16 15 13 43 43 H 1.09003 * 117.49190 * 145.02104 * 16 15 13 44 44 H 1.09002 * 117.49961 * 214.98135 * 17 15 13 45 45 H 1.09006 * 117.50154 * 359.97255 * 17 15 13 46 46 H 1.08996 * 110.40797 * 201.69133 * 18 5 4 47 47 H 1.09001 * 110.50784 * 79.30814 * 18 5 4 48 48 H 1.08999 * 109.47420 * 294.99901 * 21 19 2 49 49 H 1.08999 * 109.46958 * 55.00434 * 21 19 2 50 50 H 1.08999 * 109.47121 * 300.00235 * 22 21 19 51 51 H 1.09000 * 109.47122 * 59.99784 * 22 21 19 52 52 H 0.97008 * 120.00503 * 359.97438 * 23 22 21 53 53 H 0.96992 * 120.00206 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7709 -1.2253 5 7 3.2664 -1.4825 -0.7213 6 6 4.4424 -1.6679 -1.3531 7 8 5.3363 -2.2764 -0.8041 8 6 4.6461 -1.1199 -2.7420 9 1 4.5629 -0.0330 -2.7444 10 6 3.6386 -1.7536 -3.7396 11 6 4.4366 -1.6578 -5.0644 12 8 5.8039 -1.9005 -4.6970 13 6 6.0054 -1.5724 -3.3173 14 1 6.3621 -2.4493 -2.7769 15 6 7.0237 -0.4369 -3.1972 16 6 7.4954 0.2288 -4.4916 17 6 8.4379 -0.6980 -3.7197 18 6 2.8802 -1.9416 0.6333 19 6 2.0664 -0.7704 1.2244 20 1 1.2399 -1.1485 1.8261 21 6 2.9672 0.1334 2.0686 22 6 3.3868 -0.6083 3.3393 23 7 4.2488 0.2572 4.1479 24 6 4.7504 -0.1959 5.3388 25 1 4.5101 -1.1913 5.6821 26 6 5.5675 0.6241 6.1047 27 7 5.8608 1.8370 5.6862 28 14 6.2511 0.0061 7.7296 29 1 7.0793 -1.2031 7.4905 30 1 7.0888 1.0646 8.3489 31 1 5.1294 -0.3345 8.6411 32 1 -0.3633 0.5029 0.8962 33 1 -0.3633 0.5246 -0.8836 34 1 -0.3633 -1.0276 -0.0126 35 1 1.3234 -1.4846 -1.5808 36 1 2.3400 -0.0775 -2.0207 37 1 3.4299 -2.7918 -3.4809 38 1 2.7187 -1.1713 -3.7920 39 1 4.0936 -2.4161 -5.7682 40 1 4.3320 -0.6632 -5.4978 41 1 6.9219 0.1946 -2.3146 42 1 7.0800 -0.1419 -5.4286 43 1 7.7042 1.2982 -4.4603 44 1 9.2664 -0.2381 -3.1810 45 1 8.6429 -1.6789 -4.1486 46 1 3.7673 -2.1313 1.2376 47 1 2.2646 -2.8390 0.5712 48 1 3.8542 0.4009 1.4943 49 1 2.4229 1.0382 2.3391 50 1 2.4998 -0.8758 3.9136 51 1 3.9310 -1.5132 3.0689 52 1 4.4649 1.1512 3.8394 53 1 6.4321 2.4098 6.2212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104435845.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:59 Heat of formation + Delta-G solvation = -72.098446 kcal Electronic energy + Delta-G solvation = -30245.552697 eV Core-core repulsion = 26309.920067 eV Total energy + Delta-G solvation = -3935.632630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81739 -40.45687 -38.95167 -37.29030 -36.87854 -34.67682 -33.65502 -33.18612 -31.71970 -30.30511 -28.65677 -27.29232 -26.33098 -24.83754 -24.16245 -23.40333 -23.14278 -21.95089 -21.26296 -20.71657 -20.22701 -19.19149 -18.63860 -17.62530 -17.21269 -16.96429 -16.67608 -16.21329 -16.19110 -15.68263 -15.62778 -15.39635 -15.30553 -14.88648 -14.72256 -14.43970 -14.15170 -13.76833 -13.69838 -13.41082 -13.23212 -13.17960 -13.06987 -12.88654 -12.77340 -12.57195 -12.40935 -12.37291 -12.30151 -12.27013 -12.17363 -12.06446 -11.91706 -11.58795 -11.46110 -11.24867 -11.23245 -11.07394 -10.95159 -10.88768 -10.47396 -9.76921 -9.05464 -7.99968 -5.29717 1.42599 1.47010 1.50465 1.52956 1.84267 2.52107 2.72328 2.83137 3.32368 3.33920 3.38213 3.53790 3.58188 3.67622 3.72676 3.93696 4.04472 4.07867 4.13656 4.18446 4.20088 4.25964 4.31329 4.39595 4.42315 4.46067 4.54494 4.58775 4.66244 4.74370 4.76685 4.80231 4.81034 4.83755 4.87223 4.91330 4.95171 5.00094 5.01058 5.08907 5.16804 5.17920 5.25965 5.29396 5.30222 5.36998 5.40017 5.43810 5.59806 6.00842 6.22523 6.51547 7.05400 7.27817 8.03777 8.26915 9.23666 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.002894 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.204271 B = 9671.242452 C =11566.848651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 H 0.077 0.923 4 C 0.102 3.898 5 N -0.617 5.617 6 C 0.535 3.465 7 O -0.589 6.589 8 C -0.125 4.125 9 H 0.129 0.871 10 C -0.135 4.135 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.130 3.870 14 H 0.067 0.933 15 C -0.185 4.185 16 C -0.146 4.146 17 C -0.182 4.182 18 C 0.102 3.898 19 C -0.085 4.085 20 H 0.104 0.896 21 C -0.101 4.101 22 C 0.151 3.849 23 N -0.749 5.749 24 C -0.252 4.252 25 H 0.073 0.927 26 C -0.076 4.076 27 N -0.970 5.970 28 Si 0.977 3.023 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.273 1.273 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.038 0.962 49 H 0.067 0.933 50 H 0.026 0.974 51 H 0.008 0.992 52 H 0.372 0.628 53 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.951 -4.241 -27.445 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.325 3.675 7 O -0.470 6.470 8 C -0.146 4.146 9 H 0.147 0.853 10 C -0.172 4.172 11 C -0.030 4.030 12 O -0.308 6.308 13 C 0.071 3.929 14 H 0.085 0.915 15 C -0.203 4.203 16 C -0.183 4.183 17 C -0.219 4.219 18 C -0.020 4.020 19 C -0.104 4.104 20 H 0.122 0.878 21 C -0.139 4.139 22 C 0.024 3.976 23 N -0.392 5.392 24 C -0.384 4.384 25 H 0.091 0.909 26 C -0.268 4.268 27 N -0.621 5.621 28 Si 0.805 3.195 29 H -0.207 1.207 30 H -0.217 1.217 31 H -0.199 1.199 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.057 0.943 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.026 0.974 52 H 0.204 0.796 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.220 -4.789 -27.223 30.222 hybrid contribution 1.066 0.158 1.687 2.002 sum -11.153 -4.631 -25.536 28.248 Atomic orbital electron populations 1.21788 0.91750 1.02981 1.02848 1.22173 0.97735 0.99220 0.92651 0.90459 1.22933 0.85715 0.96184 0.97072 1.49040 1.13369 1.55262 1.17299 1.20391 0.80232 0.79075 0.87845 1.90734 1.43019 1.44424 1.68814 1.22761 0.97187 1.03425 0.91249 0.85307 1.23360 0.98914 1.02299 0.92659 1.23637 0.79776 1.03050 0.96497 1.88412 1.29676 1.87433 1.25243 1.21818 0.92848 0.95993 0.82204 0.91539 1.22662 0.96891 1.01313 0.99454 1.22929 1.01798 0.98435 0.95153 1.22947 0.92804 1.01684 1.04444 1.22497 0.98708 0.97754 0.83091 1.22127 0.97380 0.94511 0.96405 0.87835 1.21613 0.98705 0.98770 0.94797 1.20877 0.92429 0.92919 0.91342 1.42607 1.58503 1.15982 1.22060 1.19622 1.23100 0.98636 0.97022 0.90864 1.25630 1.01568 0.96637 1.02999 1.69812 1.42484 1.09209 1.40568 0.85173 0.78107 0.76882 0.79383 1.20673 1.21728 1.19859 0.92648 0.90502 0.91309 0.87856 0.88013 0.90606 0.85514 0.87783 0.89903 0.88392 0.87429 0.87861 0.88653 0.89137 0.93352 0.89061 0.94335 0.91435 0.95597 0.97435 0.79640 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.91 71.98 0.64 -0.69 16 2 C -0.10 -1.46 3.30 -9.88 -0.03 -1.49 16 3 H 0.08 1.30 7.71 -2.39 -0.02 1.28 16 4 C 0.10 1.23 5.49 86.50 0.47 1.71 16 5 N -0.62 -13.75 3.32 -807.52 -2.68 -16.43 16 6 C 0.53 14.67 7.27 87.65 0.64 15.30 16 7 O -0.59 -22.95 15.74 -3.03 -0.05 -23.00 16 8 C -0.13 -2.36 2.12 -10.28 -0.02 -2.39 16 9 H 0.13 2.02 7.77 -2.39 -0.02 2.00 16 10 C -0.13 -1.49 5.78 32.05 0.19 -1.31 16 11 C 0.05 0.53 7.78 72.65 0.57 1.10 16 12 O -0.39 -7.93 9.40 -148.98 -1.40 -9.33 16 13 C 0.13 3.06 3.30 31.06 0.10 3.16 16 14 H 0.07 2.06 6.86 -2.39 -0.02 2.05 16 15 C -0.18 -4.31 5.56 -10.79 -0.06 -4.37 16 16 C -0.15 -2.70 9.88 30.62 0.30 -2.40 16 17 C -0.18 -4.02 10.22 30.62 0.31 -3.71 16 18 C 0.10 2.57 6.45 86.53 0.56 3.13 16 19 C -0.08 -1.89 2.71 -9.89 -0.03 -1.91 16 20 H 0.10 2.04 7.71 -2.39 -0.02 2.02 16 21 C -0.10 -3.30 4.55 30.60 0.14 -3.16 16 22 C 0.15 6.40 6.12 86.38 0.53 6.93 16 23 N -0.75 -41.03 5.60 -343.47 -1.92 -42.96 16 24 C -0.25 -15.01 9.99 84.03 0.84 -14.17 16 25 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 26 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 27 N -0.97 -61.87 13.06 21.65 0.28 -61.59 16 28 Si 0.98 48.08 29.55 68.60 2.03 50.10 16 29 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 30 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 31 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 35 H 0.10 0.74 7.85 -2.39 -0.02 0.72 16 36 H 0.10 0.78 6.57 -2.39 -0.02 0.76 16 37 H 0.08 1.00 8.03 -2.38 -0.02 0.98 16 38 H 0.13 0.51 6.99 -2.39 -0.02 0.49 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.10 2.50 8.12 -2.39 -0.02 2.48 16 42 H 0.11 1.88 7.06 -2.39 -0.02 1.87 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 46 H 0.05 1.67 6.15 -2.39 -0.01 1.65 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.86 16 48 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.01 0.35 6.67 -2.39 -0.02 0.33 16 52 H 0.37 21.52 7.67 -92.70 -0.71 20.81 16 53 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -80.42 411.90 2.05 -78.37 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.17 Total: 33.23 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 5.61 Total: -8.40 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.32 Total: -120.98 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.45 Total: -32.33 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.10 kcal Total: -80.42 2.05 -78.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104435845.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.276 kcal (2) G-P(sol) polarization free energy of solvation -80.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds