Wall clock time and date at job start Tue Mar 31 2020 21:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.65990 * 2 1 4 4 C 1.54599 * 110.83267 * 236.75087 * 2 1 3 5 5 N 1.48118 * 103.42556 * 204.44538 * 4 2 1 6 6 C 1.34766 * 127.03544 * 219.28781 * 5 4 2 7 7 O 1.21287 * 119.99932 * 179.68705 * 6 5 4 8 8 C 1.50701 * 120.00231 * 359.68667 * 6 5 4 9 9 H 1.08998 * 115.55256 * 327.52248 * 8 6 5 10 10 C 1.53064 * 117.50823 * 181.81089 * 8 6 5 11 11 C 1.52698 * 59.93217 * 252.50109 * 10 8 6 12 12 C 1.53247 * 117.87733 * 107.77433 * 11 10 8 13 13 C 1.53333 * 108.48818 * 196.24476 * 12 11 10 14 14 O 1.42869 * 109.32573 * 306.04492 * 13 12 11 15 15 C 1.42866 * 114.52967 * 64.35226 * 14 13 12 16 16 C 1.53247 * 117.87881 * 252.22592 * 11 10 8 17 17 C 1.47492 * 105.92790 * 39.02563 * 5 4 2 18 18 C 1.54005 * 107.08428 * 334.77737 * 17 5 4 19 19 H 1.09008 * 110.32496 * 120.29912 * 18 17 5 20 20 C 1.53003 * 110.32543 * 242.41216 * 18 17 5 21 21 C 1.52994 * 109.46913 * 293.54654 * 20 18 17 22 22 N 1.46509 * 109.47030 * 179.97438 * 21 20 18 23 23 C 1.36933 * 120.00297 * 179.97438 * 22 21 20 24 24 H 1.08004 * 119.99811 * 0.02562 * 23 22 21 25 25 C 1.38811 * 120.00080 * 180.02562 * 23 22 21 26 26 N 1.31620 * 119.99896 * 180.02562 * 25 23 22 27 27 Si 1.86794 * 120.00046 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47228 * 89.99442 * 27 25 23 29 29 H 1.48499 * 109.47324 * 209.99815 * 27 25 23 30 30 H 1.48500 * 109.46993 * 329.99767 * 27 25 23 31 31 H 1.09004 * 109.47080 * 296.80951 * 1 2 3 32 32 H 1.09004 * 109.47080 * 56.80725 * 1 2 3 33 33 H 1.09003 * 109.47535 * 176.80850 * 1 2 3 34 34 H 1.09003 * 110.61440 * 85.93120 * 4 2 1 35 35 H 1.08994 * 110.54679 * 322.92957 * 4 2 1 36 36 H 1.08996 * 117.50416 * 359.97296 * 10 8 6 37 37 H 1.08999 * 117.50255 * 144.99600 * 10 8 6 38 38 H 1.08990 * 109.63652 * 315.94742 * 12 11 10 39 39 H 1.08998 * 109.63170 * 76.55175 * 12 11 10 40 40 H 1.08998 * 109.49551 * 186.08275 * 13 12 11 41 41 H 1.09003 * 109.48875 * 65.99371 * 13 12 11 42 42 H 1.09002 * 109.49404 * 175.68891 * 15 14 13 43 43 H 1.08998 * 109.49581 * 55.59911 * 15 14 13 44 44 H 1.09003 * 109.63621 * 283.44868 * 16 11 10 45 45 H 1.09004 * 109.63607 * 44.05151 * 16 11 10 46 46 H 1.08995 * 109.91150 * 94.13841 * 17 5 4 47 47 H 1.09000 * 109.91366 * 215.22523 * 17 5 4 48 48 H 1.08992 * 109.46826 * 53.54761 * 20 18 17 49 49 H 1.09000 * 109.46638 * 173.54842 * 20 18 17 50 50 H 1.09001 * 109.47925 * 300.00027 * 21 20 18 51 51 H 1.09000 * 109.47316 * 60.00603 * 21 20 18 52 52 H 0.97003 * 119.99431 * 0.02562 * 22 21 20 53 53 H 0.96998 * 119.99842 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0798 -0.7922 -1.2084 5 7 3.4279 -1.2113 -0.7602 6 6 4.5537 -1.2498 -1.5000 7 8 5.5970 -1.6114 -0.9982 8 6 4.5163 -0.8436 -2.9508 9 1 3.5856 -1.0591 -3.4755 10 6 5.8184 -0.9495 -3.7483 11 6 5.2747 0.4206 -3.3498 12 6 6.0107 1.1908 -2.2482 13 6 5.0907 2.3057 -1.7366 14 8 4.6540 3.1018 -2.8396 15 6 3.8423 2.4070 -3.7880 16 6 4.6708 1.2997 -4.4502 17 6 3.2874 -1.5717 0.6631 18 6 2.0775 -0.7916 1.2101 19 1 1.3217 -1.4806 1.5871 20 6 2.5200 0.1679 2.3167 21 6 3.0094 -0.6359 3.5230 22 7 3.4337 0.2828 4.5824 23 6 3.9124 -0.2115 5.7662 24 1 3.9776 -1.2788 5.9188 25 6 4.3139 0.6590 6.7702 26 7 4.7745 0.1838 7.9079 27 14 4.2005 2.5047 6.5065 28 1 2.8719 2.9889 6.9601 29 1 5.2671 3.1826 7.2863 30 1 4.3723 2.8100 5.0634 31 1 -0.3633 0.4635 0.9172 32 1 -0.3633 0.5626 -0.8600 33 1 -0.3634 -1.0261 -0.0572 34 1 2.1486 -0.1519 -2.0878 35 1 1.4547 -1.6615 -1.4123 36 1 6.7021 -1.3125 -3.2235 37 1 5.7442 -1.2353 -4.7976 38 1 6.2564 0.5143 -1.4298 39 1 6.9237 1.6268 -2.6537 40 1 5.6356 2.9312 -1.0296 41 1 4.2256 1.8647 -1.2413 42 1 3.4938 3.1051 -4.5491 43 1 2.9855 1.9654 -3.2792 44 1 5.4698 1.7449 -5.0431 45 1 4.0286 0.6952 -5.0908 46 1 3.1124 -2.6433 0.7591 47 1 4.1896 -1.2928 1.2075 48 1 3.3286 0.7991 1.9483 49 1 1.6778 0.7928 2.6139 50 1 2.2008 -1.2672 3.8914 51 1 3.8516 -1.2608 3.2257 52 1 3.3748 1.2413 4.4454 53 1 5.0547 0.7920 8.6096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105118171.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:47 Heat of formation + Delta-G solvation = -76.691064 kcal Electronic energy + Delta-G solvation = -30831.829655 eV Core-core repulsion = 26895.997873 eV Total energy + Delta-G solvation = -3935.831781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81912 -40.42277 -39.16361 -37.28567 -37.02156 -34.62014 -33.59614 -32.23935 -32.21679 -31.20201 -29.06910 -27.31626 -26.41364 -24.81567 -24.70932 -23.90074 -23.50800 -22.12007 -21.00518 -20.64970 -19.63955 -19.50657 -18.25495 -17.41884 -17.26640 -17.04675 -16.62624 -16.39037 -15.95458 -15.88907 -15.77594 -15.54245 -15.05583 -14.85548 -14.68748 -14.36294 -14.28072 -14.12580 -13.92018 -13.69544 -13.54543 -13.39874 -13.11578 -12.98409 -12.89845 -12.73757 -12.50538 -12.39130 -12.33310 -12.12500 -12.08834 -11.88136 -11.77191 -11.65815 -11.52716 -11.39392 -11.28844 -11.13857 -11.00114 -10.83958 -10.27142 -9.74611 -9.34715 -8.07361 -5.41592 1.33692 1.38085 1.38280 1.45540 1.86869 2.44596 2.71648 2.90454 3.23605 3.29479 3.44880 3.54563 3.57455 3.63313 3.70148 3.78441 3.95115 3.96944 4.01186 4.16116 4.19965 4.25354 4.36087 4.42830 4.44497 4.46140 4.57620 4.60012 4.63485 4.70194 4.71745 4.73292 4.75345 4.80108 4.85337 4.87821 4.93061 4.95231 5.02672 5.08368 5.14325 5.16480 5.21487 5.24299 5.25478 5.30923 5.39773 5.56308 5.70328 6.16957 6.24443 6.51109 7.03168 7.09657 7.79088 7.98758 9.14458 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.003064 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.853745 B = 9135.039688 C = 9635.117257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.077 0.923 4 C 0.104 3.896 5 N -0.617 5.617 6 C 0.551 3.449 7 O -0.591 6.591 8 C -0.179 4.179 9 H 0.155 0.845 10 C -0.136 4.136 11 C -0.091 4.091 12 C -0.129 4.129 13 C 0.070 3.930 14 O -0.398 6.398 15 C 0.053 3.947 16 C -0.108 4.108 17 C 0.105 3.895 18 C -0.083 4.083 19 H 0.103 0.897 20 C -0.106 4.106 21 C 0.151 3.849 22 N -0.761 5.761 23 C -0.241 4.241 24 H 0.053 0.947 25 C -0.065 4.065 26 N -0.984 5.984 27 Si 0.960 3.040 28 H -0.271 1.271 29 H -0.294 1.294 30 H -0.255 1.255 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.115 0.885 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.051 0.949 49 H 0.080 0.920 50 H 0.030 0.970 51 H 0.012 0.988 52 H 0.366 0.634 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 2.482 -34.588 36.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.017 4.017 5 N -0.348 5.348 6 C 0.342 3.658 7 O -0.472 6.472 8 C -0.199 4.199 9 H 0.173 0.827 10 C -0.173 4.173 11 C -0.092 4.092 12 C -0.167 4.167 13 C -0.007 4.007 14 O -0.318 6.318 15 C -0.023 4.023 16 C -0.146 4.146 17 C -0.018 4.018 18 C -0.102 4.102 19 H 0.121 0.879 20 C -0.144 4.144 21 C 0.025 3.975 22 N -0.406 5.406 23 C -0.372 4.372 24 H 0.071 0.929 25 C -0.257 4.257 26 N -0.635 5.635 27 Si 0.786 3.214 28 H -0.197 1.197 29 H -0.220 1.220 30 H -0.180 1.180 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.133 0.867 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.048 0.952 51 H 0.030 0.970 52 H 0.199 0.801 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.570 2.289 -34.263 35.648 hybrid contribution 0.732 0.218 1.298 1.506 sum -8.838 2.507 -32.965 34.221 Atomic orbital electron populations 1.21721 0.91707 1.03100 1.02863 1.22255 0.97624 0.98866 0.92595 0.90448 1.22851 0.81097 0.99736 0.98062 1.48816 1.09547 1.65344 1.11142 1.19932 0.81441 0.76382 0.88088 1.90703 1.31949 1.50181 1.74348 1.22440 1.00624 1.05349 0.91508 0.82708 1.23128 0.95005 0.97998 1.01169 1.21475 1.00623 0.88608 0.98502 1.21873 0.99321 0.97776 0.97741 1.22456 0.96915 0.92707 0.88584 1.87861 1.70198 1.38158 1.35540 1.22886 0.92396 0.95221 0.91823 1.21889 1.00680 0.96569 0.95432 1.22145 0.98792 0.99367 0.81543 1.22089 0.96114 0.97099 0.94907 0.87893 1.21698 1.00875 0.97955 0.93885 1.20870 0.96228 0.92595 0.87757 1.42745 1.78621 1.04790 1.14481 1.19058 1.33801 0.92791 0.91543 0.92912 1.25580 1.01238 1.03156 0.95694 1.69895 1.50967 1.35713 1.06895 0.85345 0.77736 0.79999 0.78327 1.19658 1.22050 1.17957 0.92459 0.90605 0.91302 0.88002 0.88594 0.89992 0.84607 0.92550 0.90290 0.89376 0.93617 0.86706 0.92230 0.89791 0.87452 0.91399 0.93588 0.93012 0.90188 0.95238 0.96996 0.80079 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.16 71.98 0.66 -0.67 16 2 C -0.09 -1.33 3.19 -9.70 -0.03 -1.36 16 3 H 0.08 1.23 7.86 -2.39 -0.02 1.21 16 4 C 0.10 1.27 6.26 86.61 0.54 1.81 16 5 N -0.62 -13.36 3.29 -810.07 -2.67 -16.03 16 6 C 0.55 13.96 6.61 87.66 0.58 14.54 16 7 O -0.59 -21.16 15.34 -3.05 -0.05 -21.20 16 8 C -0.18 -2.85 4.99 -11.61 -0.06 -2.91 16 9 H 0.16 1.37 7.53 -2.39 -0.02 1.35 16 10 C -0.14 -2.11 9.52 30.52 0.29 -1.82 16 11 C -0.09 -1.40 2.03 -52.21 -0.11 -1.51 16 12 C -0.13 -2.78 5.58 30.79 0.17 -2.61 16 13 C 0.07 1.47 6.85 72.09 0.49 1.96 16 14 O -0.40 -7.68 10.69 -148.98 -1.59 -9.28 16 15 C 0.05 0.58 6.85 72.09 0.49 1.08 16 16 C -0.11 -1.00 5.92 30.79 0.18 -0.81 16 17 C 0.10 2.68 6.15 86.53 0.53 3.21 16 18 C -0.08 -1.72 2.61 -9.90 -0.03 -1.75 16 19 H 0.10 1.91 7.85 -2.38 -0.02 1.89 16 20 C -0.11 -3.00 4.53 30.59 0.14 -2.86 16 21 C 0.15 5.94 6.08 86.38 0.53 6.47 16 22 N -0.76 -37.42 5.41 -343.44 -1.86 -39.27 16 23 C -0.24 -14.49 10.47 84.03 0.88 -13.61 16 24 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 25 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 26 N -0.98 -65.17 13.97 21.65 0.30 -64.87 16 27 Si 0.96 46.87 27.74 68.60 1.90 48.77 16 28 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 29 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 30 H -0.25 -11.36 6.52 99.48 0.65 -10.71 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 33 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.10 0.79 7.14 -2.39 -0.02 0.78 16 35 H 0.10 0.84 8.01 -2.39 -0.02 0.82 16 36 H 0.08 1.78 7.67 -2.39 -0.02 1.76 16 37 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.60 5.96 -2.39 -0.01 1.58 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 45 H 0.11 0.39 8.08 -2.38 -0.02 0.37 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.55 6.64 -2.39 -0.02 1.54 16 48 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.01 0.51 6.88 -2.39 -0.02 0.49 16 52 H 0.37 16.99 5.53 -92.71 -0.51 16.48 16 53 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -81.66 408.92 2.08 -79.57 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.31 Total: 26.68 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.73 Total: -4.37 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -4.22 Total: -120.18 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.64 Total: -30.48 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.77 kcal Total: -81.66 2.08 -79.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105118171.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.883 kcal (2) G-P(sol) polarization free energy of solvation -81.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds