Wall clock time and date at job start Tue Mar 31 2020 21:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 120.00317 * 2 1 4 4 C 1.50705 * 119.99428 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47212 * 95.00236 * 4 2 1 6 6 C 1.50692 * 109.47335 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00270 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00298 * 179.97438 * 6 5 4 9 9 C 1.47149 * 120.98760 * 359.97327 * 8 6 5 10 10 C 1.53296 * 108.37614 * 129.42862 * 9 8 6 11 11 H 1.08997 * 109.51341 * 292.43098 * 10 9 8 12 12 C 1.53002 * 109.51421 * 172.28094 * 10 9 8 13 13 O 1.42969 * 109.22863 * 52.35376 * 10 9 8 14 14 C 1.42894 * 114.20701 * 297.50895 * 13 10 9 15 15 C 1.52983 * 109.56244 * 302.52308 * 14 13 10 16 16 C 1.53194 * 109.34433 * 300.96146 * 15 14 13 17 17 N 1.46937 * 108.77802 * 305.42895 * 16 15 14 18 18 C 1.36930 * 120.63970 * 233.64430 * 17 16 15 19 19 H 1.08004 * 120.00161 * 27.69979 * 18 17 16 20 20 C 1.38812 * 119.99971 * 207.69410 * 18 17 16 21 21 N 1.31618 * 120.00165 * 17.37682 * 20 18 17 22 22 Si 1.86800 * 120.00089 * 197.37452 * 20 18 17 23 23 H 1.48497 * 109.47339 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46917 * 120.00124 * 22 20 18 25 25 H 1.48499 * 109.47137 * 240.00012 * 22 20 18 26 26 C 1.46920 * 118.71562 * 53.66952 * 17 16 15 27 27 C 1.52994 * 109.54881 * 182.21831 * 14 13 10 28 28 C 1.47153 * 120.98834 * 179.97438 * 8 6 5 29 29 H 1.08000 * 120.00360 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99725 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47062 * 270.00018 * 3 2 1 32 32 H 1.08996 * 109.47159 * 29.99805 * 3 2 1 33 33 H 1.09002 * 109.47241 * 150.00350 * 3 2 1 34 34 H 1.08996 * 109.47394 * 334.99387 * 4 2 1 35 35 H 1.09003 * 109.46683 * 214.99645 * 4 2 1 36 36 H 1.08997 * 109.47177 * 59.99034 * 5 4 2 37 37 H 1.09007 * 109.47083 * 299.99738 * 5 4 2 38 38 H 1.09002 * 109.68951 * 249.15119 * 9 8 6 39 39 H 1.09006 * 109.68418 * 9.67101 * 9 8 6 40 40 H 1.08998 * 109.47161 * 300.25156 * 12 10 9 41 41 H 1.08996 * 109.46935 * 60.25180 * 12 10 9 42 42 H 1.08999 * 109.47050 * 180.25063 * 12 10 9 43 43 H 1.09002 * 109.49500 * 60.92245 * 15 14 13 44 44 H 1.09004 * 109.49768 * 181.00246 * 15 14 13 45 45 H 1.09008 * 109.58933 * 185.63863 * 16 15 14 46 46 H 1.09003 * 109.70367 * 65.28727 * 16 15 14 47 47 H 0.96994 * 120.00084 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.58797 * 186.54488 * 26 17 16 49 49 H 1.08996 * 109.71341 * 66.18401 * 26 17 16 50 50 H 1.08997 * 109.49239 * 178.99997 * 27 14 13 51 51 H 1.09000 * 109.49374 * 299.05706 * 27 14 13 52 52 H 1.09001 * 109.67876 * 110.72162 * 28 8 6 53 53 H 1.08999 * 109.70973 * 350.19460 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 6 3.1812 -2.9882 -1.4383 7 8 3.4058 -3.5593 -0.3922 8 7 3.6059 -3.5207 -2.6013 9 6 3.3449 -2.8468 -3.8831 10 6 4.6663 -2.7450 -4.6534 11 1 5.3381 -2.0607 -4.1352 12 6 4.3954 -2.2244 -6.0664 13 8 5.2684 -4.0395 -4.7288 14 6 5.6153 -4.5991 -3.4605 15 6 6.5649 -3.6516 -2.7251 16 6 7.8230 -3.4357 -3.5721 17 7 8.4062 -4.7452 -3.8950 18 6 9.7195 -5.0125 -3.6145 19 1 10.2120 -4.5035 -2.7991 20 6 10.4179 -5.9378 -4.3780 21 7 9.9561 -6.3020 -5.5555 22 14 12.0132 -6.6660 -3.7345 23 1 12.3126 -6.0970 -2.3959 24 1 11.8757 -8.1406 -3.6255 25 1 13.1192 -6.3398 -4.6702 26 6 7.5531 -5.7619 -4.5251 27 6 6.2979 -5.9525 -3.6676 28 6 4.3443 -4.7932 -2.6270 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 2.2453 1.6197 -1.0277 32 1 1.4746 2.0647 0.5138 33 1 3.0160 1.1746 0.5138 34 1 1.4385 -2.0857 0.4335 35 1 2.9742 -1.1992 0.5889 36 1 3.0522 -0.9029 -1.8717 37 1 1.5166 -1.7894 -2.0273 38 1 2.6258 -3.4257 -4.4626 39 1 2.9488 -1.8481 -3.6989 40 1 3.7218 -2.9083 -6.5827 41 1 3.9365 -1.2374 -6.0082 42 1 5.3349 -2.1565 -6.6150 43 1 6.0689 -2.6950 -2.5603 44 1 6.8429 -4.0876 -1.7655 45 1 8.5447 -2.8428 -3.0100 46 1 7.5610 -2.9152 -4.4933 47 1 10.4443 -6.9482 -6.0892 48 1 8.0964 -6.7045 -4.5920 49 1 7.2666 -5.4336 -5.5242 50 1 6.5780 -6.3703 -2.7006 51 1 5.6118 -6.6325 -4.1727 52 1 3.7247 -5.5681 -3.0783 53 1 4.6126 -5.0832 -1.6111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111546124.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:31 Heat of formation + Delta-G solvation = -63.403149 kcal Electronic energy + Delta-G solvation = -31231.025704 eV Core-core repulsion = 27295.770130 eV Total energy + Delta-G solvation = -3935.255574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.90529 -40.17267 -37.99542 -37.30166 -35.77094 -35.09642 -33.36408 -32.29516 -31.69793 -31.19057 -28.80121 -28.05897 -27.31262 -26.35369 -24.84677 -24.13445 -23.05572 -22.14884 -20.56152 -19.97974 -19.37814 -18.87741 -18.04852 -17.30768 -17.01504 -16.99212 -16.67382 -16.20199 -15.83774 -15.51442 -15.38385 -15.25279 -15.06473 -14.90312 -14.77554 -14.47127 -14.14325 -13.87996 -13.52877 -13.33894 -13.32551 -13.24091 -13.07844 -13.00510 -12.82093 -12.72653 -12.64110 -12.56864 -12.50800 -12.22206 -12.06233 -11.96593 -11.85625 -11.81456 -11.74151 -11.43229 -11.30886 -10.79411 -10.76579 -10.54289 -9.89467 -9.51542 -8.68348 -7.87834 -5.33027 1.31827 1.44546 1.46545 1.56669 1.57233 1.89398 2.49905 2.71600 3.26137 3.41971 3.58914 3.69343 3.78272 3.89769 3.93540 3.97018 4.03060 4.12468 4.20127 4.24386 4.32972 4.37495 4.44164 4.47450 4.60738 4.63737 4.67651 4.71440 4.71512 4.77729 4.85406 4.88928 4.89487 4.95385 4.97673 5.04648 5.10060 5.11668 5.14558 5.15613 5.20375 5.26742 5.32877 5.39197 5.45202 5.63295 5.77654 5.78682 6.01156 6.33547 6.37967 6.40826 7.09549 7.14234 7.85124 8.38194 9.18547 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.002809 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.739332 B = 9966.203610 C =10419.565044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.069 4.069 5 C -0.123 4.123 6 C 0.509 3.491 7 O -0.585 6.585 8 N -0.612 5.612 9 C 0.082 3.918 10 C 0.059 3.941 11 H 0.057 0.943 12 C -0.136 4.136 13 O -0.377 6.377 14 C 0.128 3.872 15 C -0.137 4.137 16 C 0.154 3.846 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.063 0.937 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.291 1.291 26 C 0.190 3.810 27 C -0.118 4.118 28 C 0.097 3.903 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.015 0.985 47 H 0.250 0.750 48 H 0.053 0.947 49 H 0.000 1.000 50 H 0.066 0.934 51 H 0.075 0.925 52 H 0.080 0.920 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.715 14.034 4.614 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.132 4.132 3 C -0.178 4.178 4 C -0.106 4.106 5 C -0.162 4.162 6 C 0.300 3.700 7 O -0.465 6.465 8 N -0.345 5.345 9 C -0.040 4.040 10 C 0.001 3.999 11 H 0.075 0.925 12 C -0.193 4.193 13 O -0.296 6.296 14 C 0.088 3.912 15 C -0.176 4.176 16 C 0.029 3.971 17 N -0.331 5.331 18 C -0.394 4.394 19 H 0.080 0.920 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.218 1.218 26 C 0.065 3.935 27 C -0.158 4.158 28 C -0.026 4.026 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.018 0.982 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.099 0.901 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.494 13.557 4.892 25.879 hybrid contribution 1.314 -0.792 0.293 1.562 sum -20.180 12.765 5.185 24.435 Atomic orbital electron populations 1.23853 0.95050 1.02531 1.01523 1.21759 0.95622 0.95326 1.00487 1.20914 0.99996 0.93964 1.02972 1.20369 1.00094 0.94847 0.95337 1.21689 1.01796 0.93107 0.99617 1.21447 0.78701 0.87664 0.82197 1.90686 1.58967 1.64346 1.32538 1.48270 1.55602 1.23132 1.07460 1.22721 0.97652 1.00407 0.83200 1.22707 0.93195 0.85292 0.98738 0.92512 1.21713 1.02345 1.02310 0.92976 1.88052 1.80206 1.33162 1.28221 1.21461 0.92049 0.93919 0.83808 1.22317 0.96977 0.99489 0.98811 1.20816 0.93253 0.87419 0.95643 1.44286 1.07379 1.09824 1.71645 1.19507 0.88143 1.22295 1.09447 0.91952 1.25777 1.01089 1.02508 0.95091 1.70201 1.41477 1.35480 1.10650 0.85231 0.79482 0.77919 0.77948 1.19343 1.21503 1.21753 1.20379 0.88459 0.92784 0.91919 1.22012 0.97967 0.94610 1.01184 1.22146 0.92780 0.86418 1.01305 0.88498 0.87174 0.90237 0.91114 0.92281 0.92027 0.92169 0.86629 0.86308 0.89145 0.85373 0.91279 0.87656 0.93395 0.91124 0.92769 0.93555 0.96709 0.94051 0.92903 0.98155 0.91496 0.90640 0.90136 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 13.89 67.78 0.94 -1.32 16 2 C -0.13 -1.76 5.31 -16.49 -0.09 -1.84 16 3 C -0.12 -1.31 10.03 71.23 0.71 -0.59 16 4 C -0.07 -1.19 4.67 29.85 0.14 -1.05 16 5 C -0.12 -1.83 4.05 29.85 0.12 -1.71 16 6 C 0.51 12.39 7.71 87.65 0.68 13.06 16 7 O -0.59 -19.53 15.45 -3.04 -0.05 -19.58 16 8 N -0.61 -14.39 2.52 -817.49 -2.06 -16.45 16 9 C 0.08 1.38 5.83 86.35 0.50 1.88 16 10 C 0.06 1.36 3.02 30.69 0.09 1.45 16 11 H 0.06 1.41 6.29 -2.39 -0.02 1.39 16 12 C -0.14 -2.47 9.57 71.98 0.69 -1.78 16 13 O -0.38 -12.44 8.65 -148.98 -1.29 -13.72 16 14 C 0.13 4.34 0.68 -10.73 -0.01 4.33 16 15 C -0.14 -4.95 4.33 30.65 0.13 -4.82 16 16 C 0.15 6.76 6.28 86.36 0.54 7.30 16 17 N -0.61 -31.81 2.99 -699.05 -2.09 -33.91 16 18 C -0.26 -15.02 9.59 84.03 0.81 -14.21 16 19 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 20 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 21 N -0.93 -56.30 11.19 21.65 0.24 -56.06 16 22 Si 0.97 45.91 29.59 68.60 2.03 47.94 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.19 9.57 5.08 86.37 0.44 10.00 16 27 C -0.12 -4.65 5.10 30.66 0.16 -4.49 16 28 C 0.10 2.82 5.29 86.33 0.46 3.27 16 29 H 0.10 1.13 7.99 -2.91 -0.02 1.11 16 30 H 0.11 1.00 8.04 -2.91 -0.02 0.98 16 31 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 33 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.06 1.23 7.94 -2.39 -0.02 1.21 16 35 H 0.06 1.25 8.05 -2.39 -0.02 1.23 16 36 H 0.12 1.27 7.66 -2.39 -0.02 1.25 16 37 H 0.12 1.20 8.01 -2.38 -0.02 1.18 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.13 1.18 6.05 -2.38 -0.01 1.16 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 2.25 6.16 -2.39 -0.01 2.24 16 44 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 46 H 0.01 0.67 7.83 -2.39 -0.02 0.65 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.05 2.99 6.03 -2.38 -0.01 2.97 16 49 H 0.00 0.02 7.83 -2.39 -0.02 0.00 16 50 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 51 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.08 2.66 7.08 -2.39 -0.02 2.65 16 Total: -1.00 -73.06 405.55 4.37 -68.69 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.86 Total: 15.99 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.73 Total: 7.09 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -3.91 Total: -106.42 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.34 Total: -33.30 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.06 4.37 -68.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111546124.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.291 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds