Wall clock time and date at job start Tue Mar 31 2020 21:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99883 * 2 1 4 4 C 1.50704 * 120.00374 * 180.02562 * 2 1 3 5 5 C 1.52998 * 109.47320 * 94.99257 * 4 2 1 6 6 C 1.50700 * 109.47129 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99555 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00066 * 180.02562 * 6 5 4 9 9 C 1.47159 * 120.98563 * 359.97438 * 8 6 5 10 10 C 1.53301 * 108.37215 * 230.61463 * 9 8 6 11 11 H 1.09003 * 109.51069 * 67.57741 * 10 9 8 12 12 C 1.52999 * 109.51104 * 187.67131 * 10 9 8 13 13 O 1.42970 * 109.22763 * 307.64999 * 10 9 8 14 14 C 1.42900 * 114.20489 * 62.49688 * 13 10 9 15 15 C 1.52997 * 109.53683 * 177.77334 * 14 13 10 16 16 C 1.53189 * 109.34664 * 300.96473 * 15 14 13 17 17 N 1.46925 * 108.77177 * 305.42537 * 16 15 14 18 18 C 1.36934 * 120.63802 * 233.68316 * 17 16 15 19 19 H 1.08003 * 120.00296 * 27.68429 * 18 17 16 20 20 C 1.38813 * 120.00044 * 207.68564 * 18 17 16 21 21 N 1.31614 * 120.00088 * 17.35513 * 20 18 17 22 22 Si 1.86804 * 120.00057 * 197.35480 * 20 18 17 23 23 H 1.48504 * 109.46982 * 89.99663 * 22 20 18 24 24 H 1.48495 * 109.47334 * 210.00008 * 22 20 18 25 25 H 1.48504 * 109.46717 * 330.00162 * 22 20 18 26 26 C 1.46924 * 118.72596 * 53.66303 * 17 16 15 27 27 C 1.52977 * 109.56163 * 57.47499 * 14 13 10 28 28 C 1.47155 * 120.98756 * 180.02562 * 8 6 5 29 29 H 1.08002 * 119.99969 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00636 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47011 * 270.00929 * 3 2 1 32 32 H 1.09002 * 109.46468 * 30.00110 * 3 2 1 33 33 H 1.08993 * 109.47333 * 150.00044 * 3 2 1 34 34 H 1.09002 * 109.46402 * 334.99816 * 4 2 1 35 35 H 1.09003 * 109.46832 * 214.99837 * 4 2 1 36 36 H 1.09003 * 109.46786 * 60.00107 * 5 4 2 37 37 H 1.08996 * 109.47430 * 300.00407 * 5 4 2 38 38 H 1.08996 * 109.68700 * 350.33285 * 9 8 6 39 39 H 1.08997 * 109.68343 * 110.89646 * 9 8 6 40 40 H 1.09002 * 109.47007 * 60.00263 * 12 10 9 41 41 H 1.08998 * 109.46940 * 179.97438 * 12 10 9 42 42 H 1.09002 * 109.47419 * 300.00248 * 12 10 9 43 43 H 1.09006 * 109.49017 * 181.00290 * 15 14 13 44 44 H 1.08996 * 109.51426 * 60.94344 * 15 14 13 45 45 H 1.08999 * 109.58376 * 65.21158 * 16 15 14 46 46 H 1.09000 * 109.58837 * 185.63744 * 16 15 14 47 47 H 0.97005 * 119.99868 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.58858 * 186.55566 * 26 17 16 49 49 H 1.09001 * 109.58618 * 66.13201 * 26 17 16 50 50 H 1.09000 * 109.49287 * 178.98943 * 27 14 13 51 51 H 1.08998 * 109.49552 * 299.06855 * 27 14 13 52 52 H 1.08999 * 109.67770 * 9.76866 * 28 8 6 53 53 H 1.09001 * 109.67261 * 249.23136 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4273 -1.6834 -1.4377 6 6 3.1815 -2.9881 -1.4382 7 8 3.4054 -3.5593 -0.3921 8 7 3.6070 -3.5201 -2.6011 9 6 3.3467 -2.8457 -3.8829 10 6 2.7296 -3.8643 -4.8482 11 1 1.7357 -4.1425 -4.4975 12 6 2.6245 -3.2468 -6.2441 13 8 3.5604 -5.0267 -4.9005 14 6 3.6823 -5.7161 -3.6548 15 6 4.5439 -6.9661 -3.8440 16 6 3.8959 -7.8752 -4.8930 17 7 2.5109 -8.1517 -4.4882 18 6 2.0580 -9.4399 -4.3849 19 1 2.7484 -10.2383 -4.1560 20 6 0.7117 -9.7196 -4.5745 21 7 -0.0640 -8.8435 -5.1770 22 14 0.0007 -11.3395 -3.9746 23 1 -0.4837 -11.1811 -2.5797 24 1 -1.1311 -11.7377 -4.8495 25 1 1.0520 -12.3875 -4.0174 26 6 1.6212 -7.0196 -4.1960 27 6 2.2940 -6.1196 -3.1547 28 6 4.3447 -4.7931 -2.6269 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9352 0.0004 31 1 2.2450 1.6199 -1.0277 32 1 1.4743 2.0647 0.5139 33 1 3.0158 1.1749 0.5138 34 1 1.4386 -2.0856 0.4334 35 1 2.9743 -1.1990 0.5889 36 1 3.0522 -0.9028 -1.8718 37 1 1.5167 -1.7894 -2.0272 38 1 2.6531 -2.0191 -3.7287 39 1 4.2822 -2.4685 -4.2959 40 1 3.6188 -2.9704 -6.5950 41 1 2.1862 -3.9717 -6.9300 42 1 1.9942 -2.3585 -6.2020 43 1 4.6217 -7.5010 -2.8974 44 1 5.5391 -6.6749 -4.1799 45 1 3.9007 -7.3761 -5.8620 46 1 4.4512 -8.8108 -4.9589 47 1 -1.0049 -9.0388 -5.3092 48 1 0.6752 -7.3907 -3.8016 49 1 1.4412 -6.4513 -5.1085 50 1 2.3896 -6.6611 -2.2135 51 1 1.6889 -5.2262 -3.0009 52 1 4.3105 -5.2571 -1.6412 53 1 5.3810 -4.6110 -2.9116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111546125.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:35 Heat of formation + Delta-G solvation = -63.928773 kcal Electronic energy + Delta-G solvation = -31345.160307 eV Core-core repulsion = 27409.881940 eV Total energy + Delta-G solvation = -3935.278367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.90345 -40.17784 -37.99426 -37.31810 -35.77212 -35.14799 -33.25431 -32.29338 -31.81073 -31.18109 -28.78749 -28.06619 -27.32027 -26.36455 -24.82600 -24.17002 -23.08110 -22.12026 -20.56089 -19.99387 -19.39485 -18.88978 -18.06818 -17.31249 -17.13668 -16.83608 -16.71632 -16.16974 -15.84775 -15.67183 -15.32596 -15.22758 -15.10372 -14.89724 -14.72207 -14.49168 -14.16791 -13.85214 -13.58085 -13.33490 -13.31738 -13.23916 -13.11994 -12.97933 -12.83679 -12.73032 -12.64406 -12.55596 -12.51584 -12.24259 -12.02404 -11.98234 -11.91654 -11.83614 -11.74935 -11.43880 -11.30564 -10.80766 -10.77681 -10.54061 -9.91767 -9.51760 -8.68846 -7.88933 -5.33621 1.29535 1.43749 1.45735 1.54220 1.55144 1.90226 2.48843 2.70985 3.25041 3.41110 3.58813 3.68490 3.82290 3.88435 3.93171 3.95883 4.01329 4.11593 4.18856 4.24332 4.32598 4.40284 4.44269 4.47136 4.61455 4.62347 4.66828 4.68628 4.72119 4.78318 4.83695 4.89679 4.93101 4.95663 4.96979 5.04148 5.09327 5.11244 5.14208 5.15852 5.19694 5.31827 5.33736 5.37474 5.45422 5.62399 5.69227 5.75486 5.99467 6.32229 6.35320 6.39052 7.08530 7.13072 7.84861 8.37730 9.17472 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013608 B = 0.003146 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.117380 B = 8899.194111 C = 9596.806224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.069 4.069 5 C -0.123 4.123 6 C 0.508 3.492 7 O -0.585 6.585 8 N -0.613 5.613 9 C 0.084 3.916 10 C 0.060 3.940 11 H 0.043 0.957 12 C -0.134 4.134 13 O -0.373 6.373 14 C 0.126 3.874 15 C -0.110 4.110 16 C 0.150 3.850 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.288 1.288 24 H -0.293 1.293 25 H -0.267 1.267 26 C 0.196 3.804 27 C -0.144 4.144 28 C 0.097 3.903 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.017 0.983 46 H 0.055 0.945 47 H 0.249 0.751 48 H 0.045 0.955 49 H -0.002 1.002 50 H 0.046 0.954 51 H 0.055 0.945 52 H 0.079 0.921 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.019 22.849 4.132 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.130 4.130 3 C -0.175 4.175 4 C -0.107 4.107 5 C -0.163 4.163 6 C 0.299 3.701 7 O -0.465 6.465 8 N -0.346 5.346 9 C -0.038 4.038 10 C 0.001 3.999 11 H 0.061 0.939 12 C -0.192 4.192 13 O -0.292 6.292 14 C 0.085 3.915 15 C -0.149 4.149 16 C 0.024 3.976 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.248 4.248 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.191 1.191 26 C 0.070 3.930 27 C -0.183 4.183 28 C -0.026 4.026 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.017 0.983 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.098 0.902 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.089 22.465 4.461 23.975 hybrid contribution -1.057 -1.393 0.422 1.799 sum 6.032 21.071 4.883 22.455 Atomic orbital electron populations 1.23851 0.95372 1.02322 1.01977 1.21801 0.95473 0.95595 1.00090 1.20902 1.00046 0.93469 1.03107 1.20374 1.00251 0.94680 0.95371 1.21684 1.01560 0.93498 0.99526 1.21423 0.78500 0.87819 0.82364 1.90677 1.58964 1.64297 1.32610 1.48273 1.56007 1.22955 1.07331 1.22708 1.03419 0.95632 0.82044 1.22647 0.93423 0.85724 0.98060 0.93863 1.21695 1.03771 1.00833 0.92869 1.87987 1.69128 1.40657 1.31458 1.21518 0.94274 0.91613 0.84071 1.21888 0.98492 0.93867 1.00660 1.20895 0.85118 0.96786 0.94784 1.44299 1.08446 1.02131 1.78393 1.19549 0.93060 0.85980 1.40643 0.91463 1.25795 0.98350 1.01036 0.99579 1.70195 1.05465 1.37791 1.44586 0.85284 0.77894 0.80057 0.77352 1.21532 1.21990 1.19138 1.20292 0.92831 0.86678 0.93180 1.22452 0.97541 0.98950 0.99352 1.22188 0.95959 0.84388 1.00105 0.89267 0.86995 0.90052 0.91161 0.91752 0.92857 0.91342 0.85701 0.87468 0.85846 0.88344 0.90501 0.93659 0.88051 0.90991 0.88985 0.96530 0.92617 0.94206 0.93687 0.98347 0.93530 0.92675 0.90250 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.97 13.89 67.78 0.94 -2.03 16 2 C -0.13 -1.95 5.31 -16.48 -0.09 -2.03 16 3 C -0.12 -1.25 10.03 71.24 0.71 -0.54 16 4 C -0.07 -1.32 4.67 29.85 0.14 -1.18 16 5 C -0.12 -2.10 4.06 29.85 0.12 -1.98 16 6 C 0.51 13.28 7.71 87.66 0.68 13.96 16 7 O -0.59 -20.46 15.45 -3.02 -0.05 -20.51 16 8 N -0.61 -15.17 2.52 -817.49 -2.06 -17.23 16 9 C 0.08 1.52 5.83 86.35 0.50 2.02 16 10 C 0.06 1.52 3.01 30.69 0.09 1.61 16 11 H 0.04 1.32 6.29 -2.39 -0.01 1.30 16 12 C -0.13 -2.66 9.57 71.98 0.69 -1.97 16 13 O -0.37 -12.26 8.64 -148.98 -1.29 -13.55 16 14 C 0.13 4.24 0.68 -10.73 -0.01 4.24 16 15 C -0.11 -3.78 5.10 30.66 0.16 -3.63 16 16 C 0.15 6.46 6.28 86.36 0.54 7.00 16 17 N -0.61 -31.90 2.99 -699.10 -2.09 -33.99 16 18 C -0.26 -14.92 9.59 84.03 0.81 -14.11 16 19 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 20 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 21 N -0.93 -56.84 11.19 21.65 0.24 -56.60 16 22 Si 0.97 46.26 29.59 68.60 2.03 48.29 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.20 9.96 5.08 86.36 0.44 10.40 16 27 C -0.14 -5.88 4.33 30.65 0.13 -5.75 16 28 C 0.10 2.78 5.29 86.32 0.46 3.24 16 29 H 0.09 1.48 7.99 -2.91 -0.02 1.46 16 30 H 0.11 1.32 8.04 -2.91 -0.02 1.30 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.07 0.64 8.06 -2.39 -0.02 0.63 16 33 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.05 1.26 7.94 -2.39 -0.02 1.24 16 35 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 36 H 0.12 1.35 8.01 -2.39 -0.02 1.33 16 37 H 0.11 1.59 7.66 -2.39 -0.02 1.57 16 38 H 0.12 1.41 6.05 -2.39 -0.01 1.39 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 44 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.02 0.75 7.82 -2.39 -0.02 0.73 16 46 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 47 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 48 H 0.04 2.61 6.03 -2.39 -0.01 2.60 16 49 H 0.00 -0.08 7.83 -2.39 -0.02 -0.10 16 50 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.05 2.14 6.16 -2.39 -0.01 2.13 16 52 H 0.08 2.60 7.07 -2.39 -0.02 2.59 16 53 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.95 405.53 4.37 -69.57 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.86 Total: 17.37 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.73 Total: 6.65 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -3.91 Total: -107.82 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.33 Total: -34.06 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.95 4.37 -69.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111546125.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.645 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds