Wall clock time and date at job start Tue Mar 31 2020 21:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47351 * 62.35373 * 3 2 1 5 5 C 1.36937 * 119.99818 * 264.09132 * 4 3 2 6 6 H 1.07997 * 119.99713 * 195.70490 * 5 4 3 7 7 C 1.38818 * 119.99975 * 15.69916 * 5 4 3 8 8 N 1.31616 * 119.99879 * 15.76670 * 7 5 4 9 9 Si 1.86794 * 119.99839 * 195.76392 * 7 5 4 10 10 H 1.48500 * 109.47236 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47048 * 120.00111 * 9 7 5 12 12 H 1.48501 * 109.47634 * 240.00058 * 9 7 5 13 13 C 1.46500 * 120.00087 * 84.08556 * 4 3 2 14 14 C 1.53008 * 109.46817 * 84.42433 * 13 4 3 15 15 H 1.09003 * 109.45329 * 305.39788 * 14 13 4 16 16 C 1.53037 * 109.45779 * 65.35376 * 14 13 4 17 17 C 1.53194 * 109.31116 * 181.38680 * 16 14 13 18 18 N 1.46931 * 108.77360 * 305.36920 * 17 16 14 19 19 C 1.34775 * 120.62585 * 233.63189 * 18 17 16 20 20 O 1.21518 * 119.99985 * 179.97438 * 19 18 17 21 21 O 1.34639 * 120.00703 * 359.97301 * 19 18 17 22 22 C 1.45188 * 117.00482 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47151 * 60.00235 * 22 21 19 24 24 C 1.52997 * 109.47361 * 179.97438 * 22 21 19 25 25 C 1.53002 * 109.47388 * 300.00213 * 22 21 19 26 26 C 1.46923 * 118.74216 * 53.60450 * 18 17 16 27 27 H 1.08998 * 109.58982 * 186.60328 * 26 18 17 28 28 C 1.52998 * 109.58414 * 66.18204 * 26 18 17 29 29 C 1.53034 * 109.45895 * 185.42382 * 14 13 4 30 30 H 4.40647 * 5.51436 * 180.02562 * 4 1 2 31 31 H 1.08996 * 109.47252 * 302.34961 * 3 2 1 32 32 H 1.09006 * 109.46483 * 182.35319 * 3 2 1 33 33 H 0.97003 * 119.99988 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.46891 * 324.42550 * 13 4 3 35 35 H 1.08998 * 109.47258 * 204.41905 * 13 4 3 36 36 H 1.08998 * 109.49942 * 301.33544 * 16 14 13 37 37 H 1.08994 * 109.49699 * 61.43914 * 16 14 13 38 38 H 1.08991 * 109.59090 * 185.58004 * 17 16 14 39 39 H 1.09000 * 109.70538 * 65.21660 * 17 16 14 40 40 H 1.09001 * 109.47367 * 59.99881 * 23 22 21 41 41 H 1.08998 * 109.47166 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47115 * 299.99982 * 23 22 21 43 43 H 1.09006 * 109.47061 * 60.00156 * 24 22 21 44 44 H 1.08998 * 109.47326 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.47558 * 300.00459 * 24 22 21 46 46 H 1.09004 * 109.46990 * 59.99949 * 25 22 21 47 47 H 1.08998 * 109.47406 * 179.97438 * 25 22 21 48 48 H 1.09001 * 109.46803 * 300.00235 * 25 22 21 49 49 H 1.09009 * 109.47237 * 300.70776 * 28 26 18 50 50 H 1.08995 * 109.47223 * 60.71089 * 28 26 18 51 51 H 1.08997 * 109.47189 * 180.71230 * 28 26 18 52 52 H 1.08997 * 109.49636 * 298.56949 * 29 14 13 53 53 H 1.09005 * 109.49621 * 58.66410 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.6400 -1.2235 5 6 3.4787 -1.9654 -1.2119 6 1 4.0679 -2.3775 -2.0177 7 6 3.0700 -2.7794 -0.1643 8 7 2.1123 -2.3793 0.6450 9 14 3.8794 -4.4425 0.0968 10 1 4.9204 -4.6548 -0.9407 11 1 4.5068 -4.4820 1.4422 12 1 2.8549 -5.5129 -0.0031 13 6 3.2554 0.1372 -2.4595 14 6 4.5963 0.8741 -2.4697 15 1 4.6890 1.4717 -1.5628 16 6 5.7371 -0.1443 -2.5277 17 6 7.0784 0.5955 -2.5029 18 7 7.0943 1.5824 -3.5913 19 6 8.0988 1.5974 -4.4898 20 8 8.1003 2.4184 -5.3857 21 8 9.1006 0.7029 -4.3948 22 6 10.1488 0.7783 -5.3966 23 6 10.8177 2.1529 -5.3324 24 6 11.1913 -0.3085 -5.1267 25 6 9.5426 0.5705 -6.7859 26 6 5.9942 2.5521 -3.6819 27 1 6.0918 3.1307 -4.6005 28 6 6.0370 3.4905 -2.4743 29 6 4.6652 1.7903 -3.6935 30 1 -1.0499 0.0001 -0.0003 31 1 3.0097 -0.5490 0.8681 32 1 3.0089 1.0277 0.0422 33 1 1.8265 -2.9482 1.3768 34 1 2.4424 0.8613 -2.5140 35 1 3.2028 -0.5335 -3.3171 36 1 5.6736 -0.8112 -1.6679 37 1 5.6594 -0.7257 -3.4464 38 1 7.8913 -0.1168 -2.6435 39 1 7.1997 1.1044 -1.5466 40 1 11.2496 2.3010 -4.3426 41 1 11.6043 2.2096 -6.0847 42 1 10.0753 2.9275 -5.5244 43 1 10.7151 -1.2880 -5.1721 44 1 11.9780 -0.2522 -5.8790 45 1 11.6231 -0.1601 -4.1371 46 1 8.8001 1.3452 -6.9779 47 1 10.3294 0.6276 -7.5380 48 1 9.0660 -0.4087 -6.8316 49 1 5.9454 2.9076 -1.5577 50 1 6.9832 4.0314 -2.4679 51 1 5.2128 4.2009 -2.5369 52 1 4.5975 1.1906 -4.6012 53 1 3.8387 2.5003 -3.6635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120066128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:03 Heat of formation + Delta-G solvation = -20.349018 kcal Electronic energy + Delta-G solvation = -31031.773229 eV Core-core repulsion = 27098.384622 eV Total energy + Delta-G solvation = -3933.388607 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.96518 -40.16113 -38.19785 -37.30091 -35.28614 -34.39175 -33.40914 -33.15310 -32.10001 -29.31199 -28.33432 -28.27127 -28.00850 -27.27282 -24.87457 -24.13436 -23.42626 -21.82216 -20.90824 -19.79691 -19.24649 -18.68069 -18.10939 -17.64242 -17.17874 -16.98172 -16.28739 -15.82088 -15.61013 -15.41998 -15.33754 -15.17559 -14.93336 -14.56444 -14.36345 -14.31338 -14.14700 -13.76144 -13.31338 -13.18820 -13.16675 -13.07029 -12.91546 -12.83393 -12.81793 -12.72785 -12.52367 -12.47523 -12.33117 -12.21060 -12.17855 -12.06090 -11.93353 -11.85705 -11.34810 -11.18845 -11.07094 -10.93394 -10.75352 -10.70310 -10.20670 -9.69606 -8.81152 -7.74212 -5.16232 1.19788 1.48891 1.53157 1.60374 1.79954 2.36456 2.56876 2.63826 2.86405 3.37873 3.76073 3.78860 3.83150 3.84050 3.95771 3.98163 4.09271 4.15843 4.19074 4.31038 4.48889 4.51618 4.56946 4.63814 4.66487 4.66876 4.75041 4.78698 4.82642 4.86312 4.89485 4.89961 4.99534 5.01758 5.10207 5.13807 5.13963 5.17616 5.26861 5.30706 5.33604 5.36454 5.44842 5.51527 5.54415 5.69328 5.69909 5.73149 5.77532 6.37878 6.40143 7.20078 7.32817 7.38761 7.93028 8.34280 9.26965 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.003209 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.661479 B = 8722.161260 C =10185.227535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 C -0.126 4.126 3 C 0.268 3.732 4 N -0.597 5.597 5 C -0.243 4.243 6 H 0.077 0.923 7 C -0.052 4.052 8 N -0.923 5.923 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.293 1.293 12 H -0.305 1.305 13 C 0.155 3.845 14 C -0.091 4.091 15 H 0.074 0.926 16 C -0.113 4.113 17 C 0.119 3.881 18 N -0.586 5.586 19 C 0.648 3.352 20 O -0.595 6.595 21 O -0.370 6.370 22 C 0.122 3.878 23 C -0.176 4.176 24 C -0.136 4.136 25 C -0.178 4.178 26 C 0.156 3.844 27 H 0.092 0.908 28 C -0.155 4.155 29 C -0.114 4.114 30 H 0.218 0.782 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.243 0.757 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.092 0.908 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.086 0.914 52 H 0.055 0.945 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.570 10.091 -9.706 20.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C -0.129 4.129 3 C 0.143 3.857 4 N -0.317 5.317 5 C -0.373 4.373 6 H 0.095 0.905 7 C -0.247 4.247 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.220 1.220 12 H -0.233 1.233 13 C 0.029 3.971 14 C -0.111 4.111 15 H 0.092 0.908 16 C -0.151 4.151 17 C -0.003 4.003 18 N -0.326 5.326 19 C 0.404 3.596 20 O -0.487 6.487 21 O -0.284 6.284 22 C 0.086 3.914 23 C -0.233 4.233 24 C -0.193 4.193 25 C -0.236 4.236 26 C 0.054 3.946 27 H 0.110 0.890 28 C -0.213 4.213 29 C -0.153 4.153 30 H 0.235 0.765 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.105 0.895 52 H 0.073 0.927 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.644 10.199 -9.909 21.141 hybrid contribution -0.459 -1.362 0.308 1.470 sum 15.185 8.837 -9.601 20.022 Atomic orbital electron populations 1.25020 0.96466 1.07361 1.03990 1.24970 0.96401 0.94502 0.97024 1.17888 0.82247 0.94609 0.91001 1.44199 1.74654 1.07205 1.05659 1.19510 1.25448 0.85838 1.06500 0.90531 1.25472 0.98310 1.00627 1.00253 1.70243 1.29107 1.37750 1.19949 0.85381 0.77824 0.80766 0.77513 1.19273 1.21982 1.23300 1.20914 0.94848 0.93590 0.87725 1.21569 0.95658 0.95963 0.97943 0.90776 1.21780 0.93377 0.97917 1.02041 1.21746 0.98627 0.90510 0.89443 1.47273 1.21699 1.35217 1.28416 1.18142 0.80289 0.79801 0.81387 1.90843 1.79498 1.42083 1.36284 1.86326 1.33015 1.54157 1.54946 1.22404 0.84868 0.97944 0.86182 1.22441 1.01643 0.96092 1.03134 1.21876 0.96833 0.96658 1.03912 1.22459 1.02796 1.02315 0.95983 1.21242 0.84082 0.88684 1.00567 0.89020 1.22111 1.02713 0.98998 0.97510 1.21899 0.96561 0.98790 0.98066 0.76474 0.90077 0.92372 0.94718 0.94398 0.94506 0.90477 0.93746 0.89519 0.90349 0.92081 0.89044 0.91895 0.91716 0.87824 0.91248 0.91921 0.88966 0.92587 0.91770 0.92791 0.89484 0.92657 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.75 19.25 74.32 1.43 -12.32 16 2 C -0.13 -6.01 11.76 31.13 0.37 -5.65 16 3 C 0.27 12.17 5.43 84.57 0.46 12.63 16 4 N -0.60 -26.92 2.28 -712.53 -1.62 -28.55 16 5 C -0.24 -12.18 8.15 84.03 0.68 -11.49 16 6 H 0.08 3.77 7.59 -2.91 -0.02 3.75 16 7 C -0.05 -2.73 5.04 84.86 0.43 -2.30 16 8 N -0.92 -51.64 9.11 21.65 0.20 -51.44 16 9 Si 0.95 43.50 29.58 68.60 2.03 45.53 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 13 C 0.15 5.72 5.13 86.38 0.44 6.16 16 14 C -0.09 -2.65 2.14 -10.77 -0.02 -2.67 16 15 H 0.07 2.14 6.38 -2.39 -0.02 2.13 16 16 C -0.11 -3.43 4.91 30.67 0.15 -3.27 16 17 C 0.12 3.07 6.03 86.36 0.52 3.59 16 18 N -0.59 -15.49 2.68 -925.23 -2.48 -17.97 16 19 C 0.65 18.64 7.74 129.79 1.00 19.64 16 20 O -0.60 -18.84 11.29 19.78 0.22 -18.61 16 21 O -0.37 -9.70 8.53 -55.48 -0.47 -10.17 16 22 C 0.12 2.50 1.13 -10.79 -0.01 2.49 16 23 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 24 C -0.14 -1.97 8.85 71.98 0.64 -1.33 16 25 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 26 C 0.16 3.71 3.21 44.97 0.14 3.86 16 27 H 0.09 2.33 7.00 -2.39 -0.02 2.31 16 28 C -0.16 -3.12 9.02 71.98 0.65 -2.47 16 29 C -0.11 -2.81 4.83 30.67 0.15 -2.66 16 30 H 0.22 7.89 7.80 -4.42 -0.03 7.85 16 31 H 0.08 4.15 6.10 -2.39 -0.01 4.14 16 32 H 0.06 2.26 7.99 -2.38 -0.02 2.24 16 33 H 0.24 13.58 8.31 -92.71 -0.77 12.80 16 34 H 0.04 1.37 8.11 -2.39 -0.02 1.35 16 35 H 0.04 1.43 7.99 -2.39 -0.02 1.41 16 36 H 0.08 2.74 6.49 -2.39 -0.02 2.72 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 2.22 6.93 -2.39 -0.02 2.20 16 39 H 0.08 1.87 7.49 -2.39 -0.02 1.85 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 43 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 47 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.06 1.34 5.72 -2.38 -0.01 1.33 16 50 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -62.78 407.53 6.97 -55.81 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.86 Total: 27.00 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 8.24 Total: -1.60 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.91 Total: -97.96 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.25 Total: -28.78 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.78 6.97 -55.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120066128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.458 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds