Wall clock time and date at job start Tue Mar 31 2020 21:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47405 * 349.38994 * 3 2 1 5 5 C 1.36933 * 120.00416 * 264.79115 * 4 3 2 6 6 H 1.07992 * 120.00352 * 195.30946 * 5 4 3 7 7 C 1.38820 * 119.99797 * 15.31230 * 5 4 3 8 8 N 1.31622 * 119.99677 * 20.59720 * 7 5 4 9 9 Si 1.86793 * 120.00026 * 200.59668 * 7 5 4 10 10 H 1.48509 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47190 * 119.99699 * 9 7 5 12 12 H 1.48501 * 109.47374 * 240.00363 * 9 7 5 13 13 C 1.46503 * 119.99885 * 84.79039 * 4 3 2 14 14 C 1.52998 * 109.47224 * 89.99875 * 13 4 3 15 15 H 1.08995 * 109.46213 * 305.00647 * 14 13 4 16 16 C 1.53048 * 109.45633 * 64.97523 * 14 13 4 17 17 C 1.53195 * 109.30898 * 181.39802 * 16 14 13 18 18 N 1.46921 * 108.76664 * 305.34403 * 17 16 14 19 19 C 1.34775 * 120.62950 * 233.63931 * 18 17 16 20 20 O 1.21516 * 120.00034 * 185.40467 * 19 18 17 21 21 O 1.34636 * 120.00264 * 5.39909 * 19 18 17 22 22 C 1.45198 * 117.00252 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47242 * 60.00465 * 22 21 19 24 24 C 1.53007 * 109.47003 * 180.02562 * 22 21 19 25 25 C 1.53004 * 109.47083 * 300.00233 * 22 21 19 26 26 C 1.46921 * 118.73969 * 53.61682 * 18 17 16 27 27 H 1.09003 * 109.70584 * 66.25247 * 26 18 17 28 28 C 1.53005 * 109.58543 * 186.60257 * 26 18 17 29 29 C 1.53040 * 109.46209 * 185.02850 * 14 13 4 30 30 H 4.40636 * 5.51418 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.46861 * 229.39270 * 3 2 1 32 32 H 1.09001 * 109.47001 * 109.39498 * 3 2 1 33 33 H 0.97001 * 119.99380 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47131 * 330.00003 * 13 4 3 35 35 H 1.09003 * 109.47294 * 210.00033 * 13 4 3 36 36 H 1.08995 * 109.49590 * 301.33263 * 16 14 13 37 37 H 1.08996 * 109.50087 * 61.43463 * 16 14 13 38 38 H 1.08997 * 109.58385 * 185.55890 * 17 16 14 39 39 H 1.09005 * 109.71534 * 65.20420 * 17 16 14 40 40 H 1.09000 * 109.47269 * 59.99434 * 23 22 21 41 41 H 1.08993 * 109.47251 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.46650 * 300.00241 * 23 22 21 43 43 H 1.09000 * 109.46775 * 60.00581 * 24 22 21 44 44 H 1.09001 * 109.46702 * 180.02562 * 24 22 21 45 45 H 1.08997 * 109.46922 * 299.99682 * 24 22 21 46 46 H 1.08994 * 109.47023 * 60.00275 * 25 22 21 47 47 H 1.09005 * 109.46792 * 180.02562 * 25 22 21 48 48 H 1.09002 * 109.46774 * 299.99981 * 25 22 21 49 49 H 1.09001 * 109.46560 * 172.38570 * 28 26 18 50 50 H 1.08993 * 109.46954 * 292.38654 * 28 26 18 51 51 H 1.08990 * 109.47267 * 52.38996 * 28 26 18 52 52 H 1.09002 * 109.49352 * 298.56672 * 29 14 13 53 53 H 1.08998 * 109.49664 * 58.62991 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3567 0.2543 5 6 3.4649 -1.7383 1.5273 6 1 4.0490 -2.6322 1.6888 7 6 3.0485 -0.9762 2.6103 8 7 2.0324 -0.1496 2.4814 9 14 3.9301 -1.1240 4.2504 10 1 5.0299 -2.1152 4.1338 11 1 4.4919 0.1968 4.6313 12 1 2.9693 -1.5718 5.2904 13 6 3.2710 -2.3058 -0.8534 14 6 4.6724 -2.1890 -1.4560 15 1 4.8586 -1.1545 -1.7444 16 6 5.7109 -2.6240 -0.4193 17 6 7.1146 -2.4726 -1.0140 18 7 7.1752 -3.2186 -2.2783 19 6 8.1376 -4.1387 -2.4872 20 8 8.2373 -4.6782 -3.5714 21 8 8.9885 -4.4602 -1.4946 22 6 10.0001 -5.4587 -1.7909 23 6 10.8792 -4.9679 -2.9430 24 6 10.8661 -5.6909 -0.5511 25 6 9.3206 -6.7700 -2.1907 26 6 6.1666 -2.9428 -3.3104 27 1 6.2943 -1.9280 -3.6873 28 6 6.3230 -3.9403 -4.4600 29 6 4.7735 -3.0885 -2.6899 30 1 -1.0498 -0.0004 0.0003 31 1 3.0089 0.6697 0.7802 32 1 3.0091 0.3421 -0.9694 33 1 1.7412 0.3827 3.2383 34 1 2.5270 -2.0812 -1.6178 35 1 3.1177 -3.3198 -0.4840 36 1 5.6228 -1.9980 0.4687 37 1 5.5407 -3.6660 -0.1488 38 1 7.8515 -2.8729 -0.3178 39 1 7.3231 -1.4191 -1.2010 40 1 11.3632 -4.0337 -2.6582 41 1 11.6382 -5.7176 -3.1658 42 1 10.2619 -4.8027 -3.8261 43 1 10.2396 -6.0409 0.2693 44 1 11.6258 -6.4402 -0.7738 45 1 11.3502 -4.7569 -0.2660 46 1 8.7034 -6.6049 -3.0738 47 1 10.0801 -7.5198 -2.4128 48 1 8.6944 -7.1197 -1.3699 49 1 5.4942 -3.8228 -5.1581 50 1 7.2637 -3.7533 -4.9778 51 1 6.3224 -4.9553 -4.0629 52 1 4.6122 -4.1262 -2.3978 53 1 4.0177 -2.7938 -3.4179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120066129.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:07 Heat of formation + Delta-G solvation = -6.528263 kcal Electronic energy + Delta-G solvation = -31075.394675 eV Core-core repulsion = 27142.605381 eV Total energy + Delta-G solvation = -3932.789294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.03281 -40.00735 -38.30803 -37.19127 -35.29481 -34.42610 -33.43456 -33.26805 -32.15212 -29.04323 -28.31187 -28.27057 -28.04444 -27.16768 -25.01050 -23.98280 -23.27803 -21.69103 -21.01035 -20.21076 -19.22507 -18.47748 -18.09753 -17.58290 -17.19357 -16.95468 -16.35570 -15.73310 -15.57527 -15.54682 -15.41167 -15.06933 -14.81813 -14.62291 -14.50300 -14.39204 -14.11108 -13.51298 -13.36794 -13.27957 -13.17410 -13.10737 -13.00699 -12.81829 -12.74471 -12.68674 -12.49960 -12.46588 -12.33091 -12.17162 -12.04868 -11.96399 -11.92479 -11.90380 -11.33091 -11.26058 -11.11760 -10.73109 -10.68209 -10.28597 -10.22911 -9.60692 -8.82709 -7.76054 -5.14971 1.24158 1.48603 1.53430 1.60611 1.85313 2.36332 2.56704 2.64156 2.87872 3.35219 3.73138 3.80511 3.85228 3.89679 3.96265 4.00095 4.09070 4.14638 4.19006 4.36328 4.44980 4.51095 4.57430 4.65457 4.71792 4.74848 4.78463 4.80166 4.81229 4.87119 4.91466 4.93334 4.98691 5.02756 5.10816 5.12394 5.17705 5.25677 5.26285 5.32831 5.36572 5.39394 5.43979 5.50162 5.61001 5.67010 5.69922 5.75327 5.78886 6.36196 6.47357 7.18590 7.39151 7.39561 7.92518 8.34366 9.25956 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003218 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.760075 B = 8698.606601 C =10249.077972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.128 4.128 3 C 0.270 3.730 4 N -0.597 5.597 5 C -0.246 4.246 6 H 0.079 0.921 7 C -0.050 4.050 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.305 1.305 13 C 0.156 3.844 14 C -0.091 4.091 15 H 0.070 0.930 16 C -0.115 4.115 17 C 0.119 3.881 18 N -0.591 5.591 19 C 0.647 3.353 20 O -0.578 6.578 21 O -0.375 6.375 22 C 0.124 3.876 23 C -0.175 4.175 24 C -0.137 4.137 25 C -0.177 4.177 26 C 0.160 3.840 27 H 0.087 0.913 28 C -0.125 4.125 29 C -0.115 4.115 30 H 0.218 0.782 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.243 0.757 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.053 0.947 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.047 0.953 52 H 0.055 0.945 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.656 -8.066 -11.979 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.131 4.131 3 C 0.144 3.856 4 N -0.317 5.317 5 C -0.376 4.376 6 H 0.097 0.903 7 C -0.245 4.245 8 N -0.566 5.566 9 Si 0.781 3.219 10 H -0.191 1.191 11 H -0.220 1.220 12 H -0.233 1.233 13 C 0.030 3.970 14 C -0.112 4.112 15 H 0.088 0.912 16 C -0.153 4.153 17 C -0.003 4.003 18 N -0.332 5.332 19 C 0.402 3.598 20 O -0.469 6.469 21 O -0.290 6.290 22 C 0.088 3.912 23 C -0.232 4.232 24 C -0.194 4.194 25 C -0.234 4.234 26 C 0.059 3.941 27 H 0.105 0.895 28 C -0.182 4.182 29 C -0.154 4.154 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.066 0.934 52 H 0.073 0.927 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.741 -8.212 -12.157 21.517 hybrid contribution -0.448 0.019 1.477 1.544 sum 15.293 -8.193 -10.679 20.373 Atomic orbital electron populations 1.24994 0.96441 1.03431 1.07554 1.24902 0.96370 0.97417 0.94411 1.17802 0.82361 0.87431 0.97992 1.44236 1.74824 1.08758 1.03914 1.19491 1.25840 1.09081 0.83200 0.90328 1.25449 0.97821 1.01089 1.00179 1.70286 1.25385 1.30606 1.30297 0.85456 0.78365 0.77127 0.80997 1.19115 1.22022 1.23346 1.20900 0.94611 0.92183 0.89299 1.21558 0.96060 0.99239 0.94301 0.91189 1.21842 0.93338 1.00811 0.99354 1.21760 0.98126 0.96463 0.83940 1.47262 1.28222 1.38682 1.18996 1.18230 0.79668 0.79621 0.82261 1.90917 1.74321 1.56932 1.24776 1.86333 1.43101 1.58461 1.41144 1.22354 0.85597 0.85814 0.97457 1.22429 1.00077 1.02244 0.98464 1.21881 0.98930 1.03465 0.95106 1.22453 1.02123 0.96428 1.02442 1.21356 0.85845 1.00127 0.86819 0.89526 1.22059 1.01601 0.98047 0.96538 1.21972 0.96049 0.99871 0.97494 0.76497 0.90879 0.91999 0.94726 0.93898 0.94888 0.90272 0.93832 0.89553 0.90336 0.92274 0.89232 0.91565 0.91874 0.87919 0.91389 0.91566 0.89159 0.92828 0.91749 0.91684 0.93371 0.92656 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.62 19.25 74.32 1.43 -12.19 16 2 C -0.13 -6.12 11.65 31.13 0.36 -5.76 16 3 C 0.27 12.26 5.41 84.58 0.46 12.72 16 4 N -0.60 -27.01 2.37 -712.55 -1.69 -28.70 16 5 C -0.25 -12.35 7.99 84.04 0.67 -11.68 16 6 H 0.08 3.87 7.09 -2.91 -0.02 3.85 16 7 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 8 N -0.92 -51.68 9.32 21.65 0.20 -51.48 16 9 Si 0.95 43.42 29.60 68.60 2.03 45.45 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 12 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 13 C 0.16 5.76 5.18 86.38 0.45 6.21 16 14 C -0.09 -2.68 2.36 -10.77 -0.03 -2.70 16 15 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.12 -3.54 4.66 30.68 0.14 -3.40 16 17 C 0.12 3.11 6.46 86.36 0.56 3.66 16 18 N -0.59 -15.49 2.97 -925.24 -2.75 -18.24 16 19 C 0.65 17.95 7.54 129.79 0.98 18.92 16 20 O -0.58 -16.74 7.44 19.79 0.15 -16.59 16 21 O -0.38 -9.76 8.53 -55.46 -0.47 -10.24 16 22 C 0.12 2.50 1.13 -10.79 -0.01 2.49 16 23 C -0.17 -3.25 8.37 71.98 0.60 -2.65 16 24 C -0.14 -2.03 8.85 71.98 0.64 -1.39 16 25 C -0.18 -3.53 8.37 71.98 0.60 -2.93 16 26 C 0.16 3.76 3.49 44.98 0.16 3.91 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 C -0.13 -2.91 7.61 71.98 0.55 -2.36 16 29 C -0.12 -2.82 4.65 30.67 0.14 -2.67 16 30 H 0.22 7.93 7.80 -4.43 -0.03 7.89 16 31 H 0.07 3.73 6.29 -2.39 -0.02 3.71 16 32 H 0.06 2.40 8.11 -2.39 -0.02 2.38 16 33 H 0.24 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.04 1.53 8.07 -2.38 -0.02 1.51 16 35 H 0.03 1.29 8.04 -2.39 -0.02 1.27 16 36 H 0.08 2.86 6.06 -2.39 -0.01 2.84 16 37 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 2.24 6.92 -2.39 -0.02 2.22 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.55 5.88 -2.39 -0.01 1.54 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.07 1.63 5.88 -2.39 -0.01 1.62 16 47 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 48 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 50 H 0.06 1.65 6.68 -2.39 -0.02 1.63 16 51 H 0.05 1.30 6.81 -2.39 -0.02 1.28 16 52 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 53 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.70 405.37 6.45 -55.25 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.86 Total: 26.59 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 8.12 Total: -2.04 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -4.23 Total: -98.42 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.33 Total: -26.83 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -61.70 6.45 -55.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120066129.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.724 kcal (2) G-P(sol) polarization free energy of solvation -61.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds