Wall clock time and date at job start Tue Mar 31 2020 21:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47010 * 50.41948 * 3 2 1 5 5 C 1.36940 * 119.99757 * 95.92542 * 4 3 2 6 6 H 1.08005 * 119.99601 * 155.89686 * 5 4 3 7 7 C 1.38814 * 120.00053 * 335.89962 * 5 4 3 8 8 N 1.31610 * 119.99917 * 352.84154 * 7 5 4 9 9 Si 1.86800 * 119.99686 * 172.84096 * 7 5 4 10 10 H 1.48498 * 109.47425 * 269.99719 * 9 7 5 11 11 H 1.48501 * 109.47232 * 30.00268 * 9 7 5 12 12 H 1.48507 * 109.46911 * 150.00031 * 9 7 5 13 13 C 1.46493 * 120.00320 * 275.91938 * 4 3 2 14 14 C 1.52998 * 109.47596 * 270.00447 * 13 4 3 15 15 H 1.09007 * 109.45706 * 55.02536 * 14 13 4 16 16 C 1.53038 * 109.45842 * 295.06496 * 14 13 4 17 17 C 1.53191 * 109.31161 * 178.61077 * 16 14 13 18 18 N 1.46932 * 108.77518 * 54.63975 * 17 16 14 19 19 C 1.34772 * 120.63276 * 126.40892 * 18 17 16 20 20 O 1.21509 * 119.99820 * 184.85044 * 19 18 17 21 21 O 1.34631 * 119.99838 * 4.85917 * 19 18 17 22 22 C 1.45203 * 116.99917 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47254 * 59.99517 * 22 21 19 24 24 C 1.53001 * 109.47192 * 179.97438 * 22 21 19 25 25 C 1.53006 * 109.47021 * 299.99656 * 22 21 19 26 26 C 1.46924 * 118.73352 * 306.38779 * 18 17 16 27 27 H 1.09000 * 109.58868 * 293.82151 * 26 18 17 28 28 C 1.53001 * 109.58378 * 173.39410 * 26 18 17 29 29 C 1.53040 * 109.46216 * 174.99829 * 14 13 4 30 30 H 4.40630 * 5.51414 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.47401 * 290.41788 * 3 2 1 32 32 H 1.09006 * 109.46654 * 170.41930 * 3 2 1 33 33 H 0.97001 * 120.00050 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.47054 * 30.00760 * 13 4 3 35 35 H 1.08998 * 109.47322 * 150.00056 * 13 4 3 36 36 H 1.08997 * 109.49735 * 298.56393 * 16 14 13 37 37 H 1.09006 * 109.49666 * 58.66679 * 16 14 13 38 38 H 1.09004 * 109.59012 * 294.85187 * 17 16 14 39 39 H 1.09003 * 109.70496 * 174.49212 * 17 16 14 40 40 H 1.08996 * 109.46862 * 60.00052 * 23 22 21 41 41 H 1.09003 * 109.46871 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.46969 * 299.99872 * 23 22 21 43 43 H 1.08994 * 109.47396 * 59.99506 * 24 22 21 44 44 H 1.09006 * 109.46853 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.46776 * 299.99053 * 24 22 21 46 46 H 1.08998 * 109.46805 * 59.99611 * 25 22 21 47 47 H 1.09003 * 109.47261 * 180.02562 * 25 22 21 48 48 H 1.09008 * 109.46819 * 299.99939 * 25 22 21 49 49 H 1.08995 * 109.47569 * 304.12205 * 28 26 18 50 50 H 1.08998 * 109.47274 * 64.12278 * 28 26 18 51 51 H 1.09007 * 109.46903 * 184.12059 * 28 26 18 52 52 H 1.09001 * 109.49522 * 301.33691 * 29 14 13 53 53 H 1.09005 * 109.49874 * 61.39698 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.8792 -1.0645 5 6 3.4781 -0.3551 -2.2822 6 1 4.1770 -0.8788 -2.9177 7 6 2.9280 0.8491 -2.6997 8 7 1.9734 1.4164 -1.9933 9 14 3.5428 1.6642 -4.2640 10 1 4.6679 2.5767 -3.9375 11 1 4.0096 0.6228 -5.2142 12 1 2.4393 2.4410 -4.8839 13 6 3.2561 -2.3195 -0.8264 14 6 4.6510 -2.6304 -0.2801 15 1 4.8360 -2.0262 0.6082 16 6 5.7001 -2.3048 -1.3456 17 6 7.0973 -2.5844 -0.7830 18 7 7.1423 -3.9697 -0.2955 19 6 8.1008 -4.8165 -0.7204 20 8 8.0762 -5.9824 -0.3792 21 8 9.0855 -4.3705 -1.5228 22 6 10.0842 -5.3380 -1.9411 23 6 9.4050 -6.4702 -2.7142 24 6 11.1133 -4.6519 -2.8418 25 6 10.7863 -5.9116 -0.7086 26 6 6.1226 -4.4141 0.6645 27 1 6.2492 -3.8794 1.6058 28 6 6.2640 -5.9188 0.9030 29 6 4.7364 -4.1140 0.0857 30 1 -1.0498 -0.0003 -0.0001 31 1 3.0095 -0.3577 0.9631 32 1 3.0088 1.0142 -0.1711 33 1 1.5887 2.2577 -2.2852 34 1 2.5041 -2.6328 -0.1022 35 1 3.1047 -2.8566 -1.7627 36 1 5.5308 -2.9264 -2.2248 37 1 5.6233 -1.2533 -1.6225 38 1 7.3034 -1.9004 0.0403 39 1 7.8429 -2.4484 -1.5664 40 1 8.9048 -6.0616 -3.5922 41 1 10.1546 -7.1967 -3.0278 42 1 8.6716 -6.9591 -2.0729 43 1 11.5972 -3.8451 -2.2914 44 1 11.8627 -5.3784 -3.1561 45 1 10.6128 -4.2437 -3.7199 46 1 10.0528 -6.4004 -0.0673 47 1 11.5363 -6.6376 -1.0226 48 1 11.2702 -5.1049 -0.1579 49 1 6.2035 -6.4450 -0.0497 50 1 7.2270 -6.1237 1.3706 51 1 5.4621 -6.2598 1.5579 52 1 3.9735 -4.3503 0.8275 53 1 4.5755 -4.7186 -0.8069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120066130.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:11 Heat of formation + Delta-G solvation = -6.113597 kcal Electronic energy + Delta-G solvation = -31045.395191 eV Core-core repulsion = 27112.623878 eV Total energy + Delta-G solvation = -3932.771313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.03537 -40.00952 -38.29869 -37.17785 -35.29971 -34.42240 -33.40841 -33.25827 -32.14520 -29.05101 -28.31067 -28.26635 -28.02363 -27.15705 -24.99598 -23.98042 -23.27970 -21.71860 -21.02621 -20.21208 -19.18880 -18.43652 -18.11225 -17.54971 -17.20783 -16.96710 -16.42373 -15.72705 -15.60422 -15.53168 -15.38887 -15.05517 -14.81189 -14.55657 -14.51760 -14.39265 -14.09339 -13.54578 -13.35421 -13.22164 -13.15951 -13.09333 -12.99166 -12.83249 -12.74824 -12.68339 -12.53545 -12.46418 -12.37405 -12.12331 -12.05245 -11.98265 -11.93365 -11.90422 -11.31617 -11.26166 -11.12207 -10.80117 -10.64853 -10.25025 -10.18641 -9.60233 -8.71517 -7.73731 -5.24446 1.24120 1.49318 1.51544 1.57784 1.85195 2.38837 2.56976 2.66235 2.88194 3.40060 3.73495 3.80779 3.85512 3.89490 3.95626 4.00379 4.10741 4.15154 4.20442 4.36275 4.44904 4.51397 4.57272 4.65636 4.71942 4.74668 4.79108 4.80423 4.82544 4.87507 4.91753 4.94068 5.00619 5.03764 5.10763 5.12771 5.18311 5.25244 5.27336 5.33060 5.35911 5.39833 5.45065 5.50184 5.60685 5.67212 5.72558 5.75774 5.78590 6.41398 6.47465 7.21109 7.39734 7.42560 7.91859 8.36152 9.26346 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003155 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.362217 B = 8872.162404 C =10379.595415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.119 4.119 3 C 0.273 3.727 4 N -0.598 5.598 5 C -0.250 4.250 6 H 0.079 0.921 7 C -0.048 4.048 8 N -0.922 5.922 9 Si 0.957 3.043 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.305 1.305 13 C 0.156 3.844 14 C -0.091 4.091 15 H 0.069 0.931 16 C -0.115 4.115 17 C 0.120 3.880 18 N -0.591 5.591 19 C 0.646 3.354 20 O -0.578 6.578 21 O -0.375 6.375 22 C 0.124 3.876 23 C -0.178 4.178 24 C -0.137 4.137 25 C -0.175 4.175 26 C 0.160 3.840 27 H 0.087 0.913 28 C -0.124 4.124 29 C -0.115 4.115 30 H 0.216 0.784 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.060 0.940 51 H 0.062 0.938 52 H 0.090 0.910 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.069 -13.564 4.273 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.123 4.123 3 C 0.148 3.852 4 N -0.318 5.318 5 C -0.380 4.380 6 H 0.097 0.903 7 C -0.243 4.243 8 N -0.568 5.568 9 Si 0.787 3.213 10 H -0.211 1.211 11 H -0.199 1.199 12 H -0.232 1.232 13 C 0.030 3.970 14 C -0.112 4.112 15 H 0.088 0.912 16 C -0.154 4.154 17 C -0.002 4.002 18 N -0.332 5.332 19 C 0.402 3.598 20 O -0.469 6.469 21 O -0.290 6.290 22 C 0.088 3.912 23 C -0.235 4.235 24 C -0.194 4.194 25 C -0.232 4.232 26 C 0.059 3.941 27 H 0.105 0.895 28 C -0.181 4.181 29 C -0.154 4.154 30 H 0.233 0.767 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.108 0.892 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.100 -13.800 4.267 21.630 hybrid contribution -0.568 0.882 -1.207 1.600 sum 15.531 -12.918 3.059 20.431 Atomic orbital electron populations 1.24937 0.96399 1.05375 1.06450 1.24832 0.96293 0.96051 0.95075 1.17720 0.82373 0.95788 0.89352 1.44099 1.75017 1.01984 1.10703 1.19506 1.19147 1.04191 0.95193 0.90318 1.25703 0.97390 1.00765 1.00490 1.70147 1.27697 1.18787 1.40138 0.85418 0.76720 0.78460 0.80693 1.21136 1.19915 1.23219 1.20901 0.94549 0.83704 0.97820 1.21566 0.96102 0.95274 0.98265 0.91228 1.21852 0.93392 1.02462 0.97646 1.21750 0.98061 0.80768 0.99617 1.47252 1.27542 1.12103 1.46278 1.18244 0.79910 0.83803 0.77853 1.90928 1.77785 1.16735 1.61488 1.86328 1.36196 1.44045 1.62431 1.22352 0.85967 0.87679 0.95204 1.22450 1.02365 0.98553 1.00109 1.21879 0.97075 1.01845 0.98554 1.22435 1.01364 1.01890 0.97529 1.21375 0.85722 0.96766 0.90285 0.89529 1.22075 1.01363 0.92756 1.01917 1.21965 0.96161 0.95842 1.01402 0.76686 0.92429 0.90906 0.94696 0.94032 0.94927 0.93837 0.90260 0.90415 0.89506 0.92809 0.89171 0.91650 0.91339 0.87954 0.91829 0.91567 0.89255 0.92253 0.92841 0.92118 0.91914 0.89158 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.09 19.25 74.32 1.43 -12.66 16 2 C -0.12 -5.75 11.42 31.13 0.36 -5.40 16 3 C 0.27 12.50 5.41 84.58 0.46 12.95 16 4 N -0.60 -27.21 2.36 -712.55 -1.68 -28.89 16 5 C -0.25 -12.56 8.22 84.03 0.69 -11.87 16 6 H 0.08 3.84 6.59 -2.91 -0.02 3.82 16 7 C -0.05 -2.54 5.16 84.86 0.44 -2.11 16 8 N -0.92 -51.75 8.96 21.65 0.19 -51.55 16 9 Si 0.96 43.67 29.56 68.60 2.03 45.70 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 13 C 0.16 5.84 5.18 86.38 0.45 6.29 16 14 C -0.09 -2.72 2.36 -10.77 -0.03 -2.74 16 15 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 16 C -0.12 -3.54 4.61 30.67 0.14 -3.40 16 17 C 0.12 3.12 6.43 86.36 0.56 3.67 16 18 N -0.59 -15.49 2.97 -925.24 -2.75 -18.24 16 19 C 0.65 17.90 7.64 129.79 0.99 18.89 16 20 O -0.58 -16.78 7.28 19.81 0.14 -16.64 16 21 O -0.37 -9.64 8.55 -55.40 -0.47 -10.12 16 22 C 0.12 2.48 1.13 -10.79 -0.01 2.47 16 23 C -0.18 -3.54 8.37 71.98 0.60 -2.94 16 24 C -0.14 -1.98 8.85 71.98 0.64 -1.34 16 25 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 26 C 0.16 3.77 3.49 44.97 0.16 3.93 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 C -0.12 -2.90 7.59 71.98 0.55 -2.35 16 29 C -0.11 -2.85 4.65 30.67 0.14 -2.71 16 30 H 0.22 7.99 7.80 -4.43 -0.03 7.96 16 31 H 0.06 2.26 8.12 -2.39 -0.02 2.24 16 32 H 0.07 3.73 6.47 -2.38 -0.02 3.72 16 33 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.04 1.51 8.07 -2.38 -0.02 1.49 16 35 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 2.84 5.92 -2.38 -0.01 2.83 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.09 2.23 6.96 -2.39 -0.02 2.21 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.63 5.88 -2.39 -0.01 1.61 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 0.97 8.14 -2.38 -0.02 0.96 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.54 5.88 -2.39 -0.01 1.53 16 47 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.05 1.46 6.75 -2.39 -0.02 1.44 16 50 H 0.06 1.54 6.74 -2.39 -0.02 1.52 16 51 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 52 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -61.48 404.68 6.48 -55.00 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.86 Total: 26.68 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 8.16 Total: -1.93 kcal Atomic # 7 Polarization: -94.44 SS G_CDS: -4.24 Total: -98.68 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.33 Total: -26.75 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -61.48 6.48 -55.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120066130.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.883 kcal (2) G-P(sol) polarization free energy of solvation -61.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds