Wall clock time and date at job start Tue Mar 31 2020 21:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47026 * 299.72847 * 3 2 1 5 5 C 1.36939 * 119.99898 * 267.58547 * 4 3 2 6 6 H 1.07993 * 120.00496 * 322.92988 * 5 4 3 7 7 C 1.38818 * 119.99616 * 142.92925 * 5 4 3 8 8 N 1.31615 * 119.99665 * 157.59330 * 7 5 4 9 9 Si 1.86799 * 120.00092 * 337.59112 * 7 5 4 10 10 H 1.48502 * 109.47009 * 95.32284 * 9 7 5 11 11 H 1.48498 * 109.46998 * 215.32029 * 9 7 5 12 12 H 1.48498 * 109.47355 * 335.32342 * 9 7 5 13 13 C 1.46503 * 120.00252 * 87.31812 * 4 3 2 14 14 C 1.52990 * 109.47321 * 95.37796 * 13 4 3 15 15 H 1.08994 * 109.46250 * 56.09069 * 14 13 4 16 16 C 1.53039 * 109.46291 * 296.11748 * 14 13 4 17 17 C 1.53189 * 109.31312 * 178.61657 * 16 14 13 18 18 N 1.46928 * 108.77841 * 54.63770 * 17 16 14 19 19 C 1.34773 * 120.63507 * 126.41184 * 18 17 16 20 20 O 1.21503 * 120.00247 * 179.97438 * 19 18 17 21 21 O 1.34641 * 119.99678 * 0.02562 * 19 18 17 22 22 C 1.45199 * 116.99712 * 179.97438 * 21 19 18 23 23 C 1.53002 * 109.46945 * 59.99996 * 22 21 19 24 24 C 1.53004 * 109.47095 * 180.02562 * 22 21 19 25 25 C 1.52997 * 109.47532 * 299.99840 * 22 21 19 26 26 C 1.46930 * 118.73493 * 306.38966 * 18 17 16 27 27 H 1.08999 * 109.58567 * 173.53897 * 26 18 17 28 28 C 1.53000 * 109.58458 * 293.82128 * 26 18 17 29 29 C 1.53045 * 109.46067 * 176.05018 * 14 13 4 30 30 H 4.40636 * 5.51387 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.46968 * 179.72699 * 3 2 1 32 32 H 1.08998 * 109.46541 * 59.73059 * 3 2 1 33 33 H 0.97006 * 120.00181 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47248 * 215.38608 * 13 4 3 35 35 H 1.09000 * 109.46770 * 335.37736 * 13 4 3 36 36 H 1.09002 * 109.49686 * 298.56693 * 16 14 13 37 37 H 1.08998 * 109.49898 * 58.66085 * 16 14 13 38 38 H 1.09006 * 109.58866 * 174.42306 * 17 16 14 39 39 H 1.08993 * 109.58825 * 294.84195 * 17 16 14 40 40 H 1.09004 * 109.46941 * 60.00036 * 23 22 21 41 41 H 1.09006 * 109.46978 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.47234 * 299.99915 * 23 22 21 43 43 H 1.08993 * 109.47432 * 59.99850 * 24 22 21 44 44 H 1.08999 * 109.47125 * 180.02562 * 24 22 21 45 45 H 1.09009 * 109.46693 * 299.99761 * 24 22 21 46 46 H 1.09007 * 109.46858 * 60.00012 * 25 22 21 47 47 H 1.08999 * 109.47101 * 179.97438 * 25 22 21 48 48 H 1.09002 * 109.47274 * 300.00400 * 25 22 21 49 49 H 1.09005 * 109.47276 * 60.00180 * 28 26 18 50 50 H 1.09001 * 109.46828 * 179.97438 * 28 26 18 51 51 H 1.08999 * 109.47636 * 300.00048 * 28 26 18 52 52 H 1.09002 * 109.49779 * 301.33864 * 29 14 13 53 53 H 1.09001 * 109.50046 * 61.43341 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6840 1.1994 5 6 3.4096 0.0332 2.3330 6 1 3.8482 1.0171 2.2565 7 6 3.1246 -0.5045 3.5807 8 7 3.7558 -0.0623 4.6476 9 14 1.8452 -1.8556 3.7453 10 1 2.5183 -3.1793 3.7291 11 1 1.1114 -1.6891 5.0255 12 1 0.8890 -1.7727 2.6122 13 6 3.3235 -2.1368 1.1879 14 6 4.7836 -2.4587 0.8638 15 1 5.4338 -1.9569 1.5802 16 6 5.1113 -1.9724 -0.5498 17 6 6.5831 -2.2654 -0.8579 18 7 6.8367 -3.6958 -0.6379 19 6 7.3922 -4.4515 -1.6058 20 8 7.5973 -5.6332 -1.4114 21 8 7.7207 -3.8967 -2.7878 22 6 8.3155 -4.7704 -3.7833 23 6 7.3407 -5.9015 -4.1168 24 6 8.6191 -3.9679 -5.0501 25 6 9.6142 -5.3623 -3.2319 26 6 6.4737 -4.2865 0.6575 27 1 6.6174 -5.3664 0.6197 28 6 7.3538 -3.6902 1.7578 29 6 5.0032 -3.9710 0.9485 30 1 -1.0499 0.0001 0.0003 31 1 3.0089 1.0285 -0.0049 32 1 3.0095 -0.5172 -0.8876 33 1 3.5569 -0.4383 5.5194 34 1 3.0702 -2.5439 2.1667 35 1 2.6768 -2.5812 0.4313 36 1 4.4786 -2.4923 -1.2692 37 1 4.9323 -0.8993 -0.6160 38 1 6.7965 -2.0119 -1.8963 39 1 7.2190 -1.6757 -0.1976 40 1 6.4155 -5.4798 -4.5097 41 1 7.7870 -6.5572 -4.8646 42 1 7.1249 -6.4731 -3.2143 43 1 9.3136 -3.1623 -4.8122 44 1 9.0651 -4.6238 -5.7977 45 1 7.6940 -3.5459 -5.4432 46 1 9.3983 -5.9340 -2.3293 47 1 10.0604 -6.0186 -3.9792 48 1 10.3086 -4.5565 -2.9943 49 1 7.2050 -2.6111 1.7973 50 1 7.0827 -4.1294 2.7178 51 1 8.4005 -3.9049 1.5422 52 1 4.7473 -4.3203 1.9488 53 1 4.3715 -4.4721 0.2150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120066131.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:16 Heat of formation + Delta-G solvation = -22.781521 kcal Electronic energy + Delta-G solvation = -31258.553188 eV Core-core repulsion = 27325.059100 eV Total energy + Delta-G solvation = -3933.494088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.98477 -40.24739 -38.34682 -37.31863 -35.25908 -34.33925 -34.16882 -33.20479 -32.52350 -29.61755 -28.32398 -28.26265 -28.22480 -27.38532 -24.79428 -24.19736 -23.47223 -22.30895 -20.93362 -19.75437 -19.00880 -18.88334 -18.54976 -17.65436 -17.31075 -17.16595 -16.43705 -16.14788 -15.72603 -15.42919 -15.34865 -15.30138 -15.10237 -14.56765 -14.54557 -14.36831 -14.32467 -13.99765 -13.85093 -13.35696 -13.31047 -13.16635 -13.07259 -12.96634 -12.84215 -12.81590 -12.65473 -12.53524 -12.44085 -12.19463 -12.18062 -12.06383 -11.81818 -11.77451 -11.34056 -11.30643 -11.22904 -11.06103 -10.95675 -10.79686 -10.54048 -9.73134 -8.86324 -8.19084 -5.56301 1.16465 1.26200 1.39518 1.49693 1.79445 1.98338 2.09047 2.40923 2.85400 3.08286 3.48996 3.75867 3.79856 3.81625 3.84533 3.89868 3.98676 3.99696 4.09138 4.24798 4.39872 4.45166 4.52709 4.60800 4.62653 4.65092 4.67032 4.73109 4.77017 4.79373 4.80439 4.87541 4.89724 4.91572 4.91967 5.02666 5.05786 5.09872 5.12849 5.17161 5.25220 5.28688 5.32234 5.33002 5.38475 5.52767 5.63625 5.65669 5.96065 6.19936 6.40081 6.88438 6.99654 7.31947 7.62196 8.03547 9.00066 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.003284 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.416696 B = 8523.583032 C = 9384.647946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.211 4.211 3 C 0.236 3.764 4 N -0.601 5.601 5 C -0.247 4.247 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.927 3.073 10 H -0.272 1.272 11 H -0.316 1.316 12 H -0.269 1.269 13 C 0.143 3.857 14 C -0.094 4.094 15 H 0.063 0.937 16 C -0.113 4.113 17 C 0.117 3.883 18 N -0.585 5.585 19 C 0.651 3.349 20 O -0.596 6.596 21 O -0.365 6.365 22 C 0.123 3.877 23 C -0.179 4.179 24 C -0.135 4.135 25 C -0.178 4.178 26 C 0.162 3.838 27 H 0.094 0.906 28 C -0.157 4.157 29 C -0.120 4.120 30 H 0.235 0.765 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.261 0.739 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.090 0.910 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.071 0.929 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.595 -9.348 -19.117 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.214 4.214 3 C 0.111 3.889 4 N -0.322 5.322 5 C -0.377 4.377 6 H 0.072 0.928 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.758 3.242 10 H -0.199 1.199 11 H -0.246 1.246 12 H -0.194 1.194 13 C 0.018 3.982 14 C -0.115 4.115 15 H 0.082 0.918 16 C -0.151 4.151 17 C -0.005 4.005 18 N -0.325 5.325 19 C 0.406 3.594 20 O -0.488 6.488 21 O -0.280 6.280 22 C 0.087 3.913 23 C -0.236 4.236 24 C -0.192 4.192 25 C -0.236 4.236 26 C 0.060 3.940 27 H 0.112 0.888 28 C -0.215 4.215 29 C -0.159 4.159 30 H 0.251 0.749 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.089 0.911 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.753 -9.712 -18.989 23.055 hybrid contribution -1.135 -0.480 1.133 1.674 sum 7.618 -10.191 -17.856 21.926 Atomic orbital electron populations 1.25574 0.96903 1.02157 1.01941 1.25588 0.97224 0.99375 0.99198 1.18475 0.81544 0.98586 0.90261 1.44254 1.74330 1.03126 1.10455 1.18690 1.33552 1.01791 0.83685 0.92764 1.25874 0.98922 1.00250 0.95353 1.69953 1.42356 1.46595 0.99568 0.86137 0.81855 0.80579 0.75663 1.19884 1.24567 1.19435 1.21205 0.95228 0.83500 0.98220 1.21497 0.97820 0.94383 0.97763 0.91834 1.21847 0.95260 1.02359 0.95591 1.21780 0.96665 0.79160 1.02895 1.47196 1.62156 1.10447 1.12714 1.18083 0.77131 0.83493 0.80687 1.90850 1.60383 1.15651 1.81885 1.86315 1.75214 1.43683 1.22781 1.22409 0.92630 0.89858 0.86414 1.22460 0.99354 0.98575 1.03184 1.21872 1.03076 1.00763 0.93450 1.22459 0.96070 1.01891 1.03130 1.21102 0.93967 0.98480 0.80490 0.88752 1.22108 0.99356 1.01924 0.98147 1.21926 0.95287 0.96559 1.02089 0.74890 0.90173 0.88228 0.92973 0.95771 0.92599 0.91654 0.89710 0.88125 0.91132 0.92173 0.89088 0.92121 0.91242 0.87976 0.91282 0.92111 0.89084 0.92117 0.92265 0.90716 0.92249 0.91086 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.53 19.25 74.32 1.43 -7.10 16 2 C -0.21 -8.03 13.68 31.13 0.43 -7.60 16 3 C 0.24 8.49 5.25 84.58 0.44 8.94 16 4 N -0.60 -25.82 1.76 -712.58 -1.25 -27.08 16 5 C -0.25 -13.09 9.89 84.03 0.83 -12.26 16 6 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 7 C -0.01 -0.38 5.33 84.86 0.45 0.07 16 8 N -0.94 -56.70 13.97 21.65 0.30 -56.40 16 9 Si 0.93 45.95 25.01 68.60 1.72 47.67 16 10 H -0.27 -12.70 6.68 99.48 0.66 -12.03 16 11 H -0.32 -16.21 7.11 99.48 0.71 -15.50 16 12 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 13 C 0.14 5.58 4.13 86.38 0.36 5.93 16 14 C -0.09 -3.08 2.13 -10.77 -0.02 -3.10 16 15 H 0.06 2.44 6.49 -2.39 -0.02 2.42 16 16 C -0.11 -3.02 4.50 30.67 0.14 -2.88 16 17 C 0.12 2.85 6.03 86.36 0.52 3.37 16 18 N -0.59 -15.67 2.68 -925.25 -2.48 -18.15 16 19 C 0.65 18.33 7.74 129.79 1.00 19.34 16 20 O -0.60 -18.98 11.29 19.83 0.22 -18.75 16 21 O -0.37 -8.90 8.53 -55.50 -0.47 -9.37 16 22 C 0.12 2.34 1.13 -10.79 -0.01 2.33 16 23 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 24 C -0.13 -1.68 8.85 71.98 0.64 -1.05 16 25 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 26 C 0.16 4.43 3.21 44.97 0.14 4.57 16 27 H 0.09 2.68 7.00 -2.39 -0.02 2.67 16 28 C -0.16 -4.20 9.03 71.98 0.65 -3.55 16 29 C -0.12 -3.49 4.83 30.67 0.15 -3.34 16 30 H 0.23 6.05 7.80 -4.42 -0.03 6.02 16 31 H 0.08 2.84 8.02 -2.39 -0.02 2.82 16 32 H 0.10 2.90 6.49 -2.39 -0.02 2.89 16 33 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 34 H 0.02 1.08 2.95 -2.39 -0.01 1.07 16 35 H 0.06 2.00 8.03 -2.39 -0.02 1.98 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 2.32 6.16 -2.39 -0.01 2.31 16 38 H 0.10 2.18 6.93 -2.38 -0.02 2.16 16 39 H 0.07 1.75 7.50 -2.39 -0.02 1.73 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.06 1.50 5.88 -2.38 -0.01 1.49 16 47 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.06 1.73 5.72 -2.38 -0.01 1.71 16 50 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 53 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.96 404.77 7.22 -59.74 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.83 Total: 24.19 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 8.35 Total: -1.85 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.43 Total: -101.63 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.25 Total: -28.13 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.72 Total: 47.67 kcal Total: -66.96 7.22 -59.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120066131.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.958 kcal (2) G-P(sol) polarization free energy of solvation -66.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds