Wall clock time and date at job start Tue Mar 31 2020 20:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.90020 * 2 1 4 4 C 1.54393 * 109.82791 * 239.07309 * 2 1 3 5 5 C 1.55307 * 102.25325 * 219.12811 * 4 2 1 6 6 C 1.54949 * 100.93733 * 34.13322 * 5 4 2 7 7 H 1.09000 * 110.31185 * 82.57518 * 6 5 4 8 8 C 1.53003 * 110.30498 * 204.63815 * 6 5 4 9 9 C 1.53002 * 109.47324 * 185.00210 * 8 6 5 10 10 C 1.50701 * 109.47360 * 180.02562 * 9 8 6 11 11 O 1.21287 * 119.99883 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00060 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00045 * 179.97438 * 12 10 9 14 14 C 1.53946 * 113.57957 * 155.00207 * 13 12 10 15 15 C 1.52907 * 86.78355 * 89.94873 * 14 13 12 16 16 C 1.52914 * 121.13313 * 150.62167 * 15 14 13 17 17 C 1.53948 * 86.78347 * 100.82005 * 16 15 14 18 18 N 1.46494 * 113.58416 * 139.33560 * 17 16 15 19 19 C 1.36931 * 120.00458 * 154.99722 * 18 17 16 20 20 H 1.08002 * 120.00103 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00429 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00576 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00326 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00037 * 23 21 19 27 27 C 1.52912 * 121.13384 * 259.17832 * 15 14 13 28 28 C 1.52905 * 88.04136 * 24.89915 * 15 14 13 29 29 O 1.43236 * 109.83709 * 120.94324 * 2 1 3 30 30 H 1.08995 * 109.47049 * 180.92880 * 1 2 3 31 31 H 1.08999 * 109.46823 * 300.92424 * 1 2 3 32 32 H 1.08994 * 109.47377 * 60.92823 * 1 2 3 33 33 H 1.09003 * 110.84813 * 100.93774 * 4 2 1 34 34 H 1.09002 * 110.84788 * 337.32069 * 4 2 1 35 35 H 1.08998 * 111.11962 * 276.21325 * 5 4 2 36 36 H 1.08999 * 111.12121 * 152.05035 * 5 4 2 37 37 H 1.09001 * 109.47029 * 65.00111 * 8 6 5 38 38 H 1.08999 * 109.47317 * 305.00290 * 8 6 5 39 39 H 1.08994 * 109.46837 * 60.00155 * 9 8 6 40 40 H 1.08999 * 109.46989 * 300.00281 * 9 8 6 41 41 H 0.97003 * 119.99644 * 0.02562 * 12 10 9 42 42 H 1.09006 * 112.81966 * 23.91277 * 13 12 10 43 43 H 1.09000 * 113.66233 * 335.47110 * 14 13 12 44 44 H 1.09008 * 113.66513 * 204.42512 * 14 13 12 45 45 H 1.08995 * 113.66406 * 346.33954 * 16 15 14 46 46 H 1.09006 * 113.65608 * 215.29366 * 16 15 14 47 47 H 1.08997 * 113.57540 * 270.05408 * 17 16 15 48 48 H 0.97000 * 119.99459 * 334.99521 * 18 17 16 49 49 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 50 50 H 1.09000 * 113.65985 * 144.71075 * 27 15 14 51 51 H 1.08998 * 113.66345 * 13.65492 * 27 15 14 52 52 H 1.08998 * 113.66407 * 89.57213 * 28 15 14 53 53 H 1.09002 * 113.66280 * 220.62820 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0537 -0.7465 -1.2459 5 6 3.2730 -1.5221 -0.6771 6 6 2.7747 -1.8445 0.7542 7 1 2.1415 -2.7317 0.7436 8 6 3.9627 -2.0524 1.6958 9 6 3.4534 -2.4910 3.0703 10 6 4.6235 -2.6952 3.9979 11 8 5.7535 -2.5087 3.5987 12 7 4.4141 -3.0849 5.2709 13 6 5.5516 -3.2839 6.1725 14 6 5.1930 -3.1236 7.6610 15 6 4.8861 -4.6215 7.6597 16 6 5.0576 -5.4648 8.9237 17 6 3.5316 -5.3588 9.0969 18 7 2.9040 -6.6061 9.5403 19 6 1.7131 -6.5712 10.2151 20 1 1.2361 -5.6242 10.4203 21 6 1.1181 -7.7531 10.6348 22 7 1.6992 -8.9073 10.3844 23 14 -0.5062 -7.7056 11.5560 24 1 -0.2453 -7.6096 13.0147 25 1 -1.2910 -6.5246 11.1147 26 1 -1.2735 -8.9445 11.2708 27 6 3.4478 -5.1338 7.5762 28 6 5.8459 -4.7638 6.4780 29 8 2.0161 -0.6928 1.1556 30 1 -0.3633 -1.0275 0.0167 31 1 -0.3633 0.5281 0.8816 32 1 -0.3634 0.4993 -0.8981 33 1 2.3671 -0.0424 -2.0167 34 1 1.3011 -1.4348 -1.6306 35 1 4.1620 -0.8920 -0.6510 36 1 3.4571 -2.4348 -1.2439 37 1 4.5159 -1.1185 1.7943 38 1 4.6185 -2.8220 1.2888 39 1 2.9002 -3.4249 2.9717 40 1 2.7975 -1.7214 3.4773 41 1 3.5104 -3.2344 5.5900 42 1 6.4329 -2.7168 5.8727 43 1 4.3177 -2.4978 7.8351 44 1 6.0416 -2.8513 8.2886 45 1 5.6230 -4.9646 9.7099 46 1 5.4064 -6.4790 8.7289 47 1 3.2184 -4.4958 9.6844 48 1 3.3322 -7.4567 9.3557 49 1 1.2836 -9.7333 10.6779 50 1 3.3441 -6.0550 7.0028 51 1 2.7272 -4.3692 7.2861 52 1 6.8781 -4.9527 6.7730 53 1 5.4922 -5.4484 5.7070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122220498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:33 Heat of formation + Delta-G solvation = -68.054785 kcal Electronic energy + Delta-G solvation = -28803.777920 eV Core-core repulsion = 24868.320636 eV Total energy + Delta-G solvation = -3935.457284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.79699 -40.70993 -40.05396 -37.21933 -35.12471 -34.88873 -33.53592 -33.17708 -31.67019 -31.20073 -27.62681 -26.75422 -26.55919 -26.10696 -24.51803 -23.32820 -22.43035 -21.76833 -21.15655 -21.05684 -19.39266 -18.71948 -18.16817 -17.94210 -16.99773 -16.87673 -16.73056 -16.35910 -16.03659 -15.72796 -15.31153 -15.27700 -15.06657 -14.60705 -14.47853 -14.34337 -14.08662 -13.86039 -13.62606 -13.48540 -13.27786 -13.05457 -13.00026 -12.88782 -12.82365 -12.64890 -12.61512 -12.42699 -12.15627 -12.03601 -11.99824 -11.85022 -11.78660 -11.69021 -11.59378 -11.18963 -11.14151 -10.86549 -10.77906 -10.60811 -10.42930 -9.97420 -8.95877 -7.93413 -5.21348 1.47882 1.49348 1.57682 1.64558 2.21229 2.57432 2.84301 3.38111 3.52937 3.55716 3.59365 3.69273 3.73304 3.83809 3.89781 3.91342 3.99425 4.14523 4.17430 4.32357 4.33890 4.36754 4.40801 4.48876 4.56497 4.63342 4.66707 4.73872 4.78088 4.80414 4.84933 4.90815 4.92199 4.96191 4.97911 4.98963 5.03112 5.06642 5.09373 5.12995 5.17566 5.23109 5.26072 5.32190 5.37622 5.45394 5.56531 5.67184 5.77919 6.19640 6.29030 6.57816 7.26742 7.34478 8.13122 8.35248 9.30013 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.002037 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.604824 B =13741.008297 C =15534.233490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.065 3.935 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.078 3.922 7 H 0.078 0.922 8 C -0.095 4.095 9 C -0.133 4.133 10 C 0.513 3.487 11 O -0.584 6.584 12 N -0.705 5.705 13 C 0.124 3.876 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.132 4.132 17 C 0.148 3.852 18 N -0.729 5.729 19 C -0.240 4.240 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.972 3.028 24 H -0.288 1.288 25 H -0.268 1.268 26 H -0.298 1.298 27 C -0.130 4.130 28 C -0.134 4.134 29 O -0.397 6.397 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.410 0.590 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.098 0.902 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 19.066 -23.016 30.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.096 0.904 4 C -0.184 4.184 5 C -0.189 4.189 6 C 0.021 3.979 7 H 0.096 0.904 8 C -0.133 4.133 9 C -0.173 4.173 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.356 5.356 13 C 0.018 3.982 14 C -0.147 4.147 15 C -0.091 4.091 16 C -0.171 4.171 17 C 0.038 3.962 18 N -0.367 5.367 19 C -0.372 4.372 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.216 1.216 25 H -0.193 1.193 26 H -0.224 1.224 27 C -0.171 4.171 28 C -0.173 4.173 29 O -0.317 6.317 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.247 0.753 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.086 0.914 52 H 0.117 0.883 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.005 19.340 -22.981 30.302 hybrid contribution -1.030 -1.039 0.667 1.608 sum 2.974 18.300 -22.314 29.012 Atomic orbital electron populations 1.22128 0.94385 1.02505 1.02710 1.22881 0.94797 0.96396 0.85107 0.90434 1.23195 0.97649 0.99942 0.97621 1.23311 0.98697 1.01932 0.95004 1.23067 0.91855 0.89273 0.93700 0.90380 1.21407 0.96475 1.02171 0.93213 1.21663 0.95896 1.04998 0.94729 1.21225 0.91104 0.74855 0.82644 1.90661 1.26252 1.53053 1.76488 1.45776 1.10384 1.68352 1.11039 1.21786 0.89926 0.96617 0.89881 1.23047 1.03102 0.93986 0.94538 1.22193 0.95669 0.96081 0.95138 1.23164 0.97037 0.99473 0.97437 1.21930 0.92242 0.88798 0.93201 1.42630 1.23520 1.03957 1.66546 1.19715 0.98004 0.92852 1.26598 0.90422 1.25584 1.02803 0.95207 1.03628 1.69827 1.41586 0.97176 1.53660 0.85152 0.79664 0.76791 0.78255 1.21565 1.19257 1.22432 1.23333 0.94535 0.99718 0.99485 1.23247 1.00217 0.96607 0.97244 1.88423 1.70902 1.40900 1.31499 0.92484 0.92761 0.89990 0.88754 0.89631 0.90498 0.88566 0.92129 0.90189 0.87181 0.87601 0.75313 0.88935 0.90073 0.87008 0.90895 0.91617 0.90694 0.79666 0.94156 0.92141 0.91431 0.88331 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.44 71.98 0.68 -1.13 16 2 C 0.07 0.86 4.16 31.07 0.13 0.99 16 3 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 4 C -0.15 -1.36 6.54 31.86 0.21 -1.15 16 5 C -0.15 -1.68 6.57 32.05 0.21 -1.47 16 6 C 0.08 1.15 3.40 31.26 0.11 1.26 16 7 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 8 C -0.09 -1.65 4.23 30.60 0.13 -1.52 16 9 C -0.13 -2.30 5.63 29.85 0.17 -2.14 16 10 C 0.51 11.96 7.83 87.66 0.69 12.64 16 11 O -0.58 -17.87 15.58 -3.05 -0.05 -17.92 16 12 N -0.70 -14.91 5.26 -439.52 -2.31 -17.22 16 13 C 0.12 2.73 4.31 45.63 0.20 2.93 16 14 C -0.11 -2.22 7.59 30.88 0.23 -1.99 16 15 C -0.09 -2.30 1.02 -52.31 -0.05 -2.36 16 16 C -0.13 -4.14 7.59 30.89 0.23 -3.91 16 17 C 0.15 5.59 4.48 45.63 0.20 5.80 16 18 N -0.73 -36.51 5.40 -319.94 -1.73 -38.24 16 19 C -0.24 -13.19 9.97 84.03 0.84 -12.35 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 23 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 27 C -0.13 -4.09 7.18 30.89 0.22 -3.87 16 28 C -0.13 -3.21 7.64 30.88 0.24 -2.97 16 29 O -0.40 -7.19 10.47 -148.98 -1.56 -8.75 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.67 7.85 -2.39 -0.02 0.65 16 35 H 0.08 0.91 8.06 -2.39 -0.02 0.89 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 38 H 0.08 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.73 7.99 -2.39 -0.02 1.72 16 41 H 0.41 7.56 7.57 -92.71 -0.70 6.86 16 42 H 0.09 2.21 7.47 -2.38 -0.02 2.19 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.07 2.24 8.12 -2.38 -0.02 2.22 16 47 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 48 H 0.37 20.22 7.92 -92.71 -0.73 19.49 16 49 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 50 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.07 1.88 7.47 -2.39 -0.02 1.87 16 52 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 53 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -69.72 420.61 1.01 -68.71 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.55 Total: 40.22 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 4.90 Total: -15.38 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.76 Total: -114.88 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.61 Total: -26.67 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -69.72 1.01 -68.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122220498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.656 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds