Wall clock time and date at job start Tue Mar 31 2020 20:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.33387 * 2 1 4 4 C 1.54478 * 110.46678 * 237.68110 * 2 1 3 5 5 C 1.54692 * 104.07976 * 217.04969 * 4 2 1 6 6 C 1.54477 * 103.97904 * 0.14239 * 5 4 2 7 7 H 1.09007 * 110.36802 * 264.96338 * 6 5 4 8 8 C 1.52992 * 110.37606 * 142.73627 * 6 5 4 9 9 C 1.52997 * 109.47482 * 176.54629 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.53944 * 113.58112 * 252.72128 * 13 12 10 15 15 C 1.52910 * 86.78700 * 220.66684 * 14 13 12 16 16 C 1.52906 * 121.14021 * 150.61684 * 15 14 13 17 17 C 1.53957 * 86.78283 * 100.82034 * 16 15 14 18 18 N 1.46498 * 113.58345 * 270.13341 * 17 16 15 19 19 C 1.36930 * 119.99775 * 252.72105 * 18 17 16 20 20 H 1.08000 * 120.00129 * 359.97438 * 19 18 17 21 21 C 1.38818 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99895 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00177 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47176 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47079 * 120.00256 * 23 21 19 26 26 H 1.48500 * 109.47645 * 240.00447 * 23 21 19 27 27 C 1.52915 * 121.13560 * 259.18304 * 15 14 13 28 28 C 1.52912 * 88.04014 * 24.89708 * 15 14 13 29 29 O 1.44425 * 104.90283 * 23.84597 * 6 5 4 30 30 H 1.08998 * 109.47377 * 299.20569 * 1 2 3 31 31 H 1.09001 * 109.47006 * 59.20887 * 1 2 3 32 32 H 1.09003 * 109.47310 * 179.20459 * 1 2 3 33 33 H 1.08995 * 110.51304 * 335.78826 * 4 2 1 34 34 H 1.08999 * 110.51027 * 98.36448 * 4 2 1 35 35 H 1.08994 * 110.61514 * 241.48803 * 5 4 2 36 36 H 1.09006 * 110.48216 * 118.72342 * 5 4 2 37 37 H 1.09002 * 109.47103 * 56.54382 * 8 6 5 38 38 H 1.08998 * 109.46862 * 296.55194 * 8 6 5 39 39 H 1.09002 * 109.47153 * 59.99783 * 9 8 6 40 40 H 1.09001 * 109.46832 * 299.99974 * 9 8 6 41 41 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 42 42 H 1.08999 * 112.83005 * 23.91292 * 13 12 10 43 43 H 1.09000 * 113.66470 * 335.13494 * 14 13 12 44 44 H 1.09001 * 113.66716 * 106.19197 * 14 13 12 45 45 H 1.08997 * 113.66208 * 215.29102 * 16 15 14 46 46 H 1.08999 * 113.66181 * 346.35370 * 16 15 14 47 47 H 1.09000 * 113.65175 * 139.34494 * 17 16 15 48 48 H 0.97003 * 120.00155 * 72.71140 * 18 17 16 49 49 H 0.96996 * 119.99887 * 180.02562 * 22 21 19 50 50 H 1.08995 * 113.66014 * 13.64557 * 27 15 14 51 51 H 1.08997 * 113.65860 * 144.61295 * 27 15 14 52 52 H 1.08997 * 113.66466 * 220.62707 * 28 15 14 53 53 H 1.09004 * 113.73985 * 89.58445 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0701 -0.7738 -1.2231 5 6 3.3237 -1.5024 -0.6838 6 6 3.3882 -1.0841 0.8018 7 1 4.0523 -0.2287 0.9266 8 6 3.8619 -2.2551 1.6649 9 6 4.0009 -1.7949 3.1173 10 6 4.4669 -2.9487 3.9675 11 8 4.6685 -4.0322 3.4614 12 7 4.6605 -2.7760 5.2901 13 6 5.1141 -3.8975 6.1164 14 6 4.0185 -4.4683 7.0350 15 6 5.0992 -4.5800 8.1109 16 6 4.7507 -4.4727 9.5959 17 6 4.8361 -6.0093 9.6380 18 7 3.5633 -6.6752 9.3503 19 6 2.8658 -7.2841 10.3592 20 1 3.2543 -7.2739 11.3668 21 6 1.6595 -7.9146 10.0867 22 7 1.1863 -7.9275 8.8586 23 14 0.7084 -8.7459 11.4628 24 1 1.4494 -8.5912 12.7404 25 1 -0.6311 -8.1173 11.5887 26 1 0.5505 -10.1898 11.1535 27 6 5.7725 -5.9179 8.4194 28 6 5.8553 -3.4613 7.3933 29 8 2.0328 -0.7225 1.1451 30 1 -0.3634 0.5014 0.8970 31 1 -0.3633 0.5261 -0.8828 32 1 -0.3634 -1.0276 -0.0143 33 1 1.3314 -1.4929 -1.5768 34 1 2.3428 -0.0837 -2.0215 35 1 4.2172 -1.1715 -1.2130 36 1 3.2044 -2.5823 -0.7717 37 1 4.8273 -2.6072 1.3013 38 1 3.1351 -3.0654 1.6083 39 1 3.0354 -1.4428 3.4809 40 1 4.7278 -0.9846 3.1737 41 1 4.4996 -1.9093 5.6948 42 1 5.6439 -4.6581 5.5430 43 1 3.2332 -3.7520 7.2766 44 1 3.6286 -5.4311 6.7049 45 1 5.5172 -3.9755 10.1903 46 1 3.7494 -4.0850 9.7833 47 1 5.3225 -6.3959 10.5336 48 1 3.2145 -6.6846 8.4452 49 1 0.3432 -8.3677 8.6683 50 1 5.5873 -6.6845 7.6670 51 1 6.8265 -5.8269 8.6816 52 1 6.9328 -3.6197 7.3495 53 1 5.5874 -2.4614 7.7347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122220500.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:41 Heat of formation + Delta-G solvation = -69.067659 kcal Electronic energy + Delta-G solvation = -28837.497946 eV Core-core repulsion = 24901.996740 eV Total energy + Delta-G solvation = -3935.501206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70374 -40.70454 -40.11385 -37.21307 -35.18420 -34.89749 -33.56961 -33.14308 -31.67727 -31.21914 -27.64901 -26.82358 -26.55960 -25.87996 -24.66796 -23.41604 -22.26328 -21.71438 -21.39475 -21.17282 -19.30468 -18.81280 -18.02037 -17.50485 -17.16842 -17.03210 -16.73274 -16.35046 -16.03906 -15.85421 -15.73056 -15.25807 -14.94816 -14.64171 -14.51047 -14.20587 -14.06798 -13.78524 -13.54381 -13.49222 -13.37210 -13.08098 -13.03404 -12.97844 -12.82525 -12.63018 -12.52760 -12.45097 -12.16257 -12.07025 -12.02004 -11.80988 -11.75337 -11.65692 -11.49887 -11.30608 -11.08225 -10.91555 -10.82311 -10.64972 -10.52554 -9.95552 -8.99083 -7.95652 -5.23996 1.45168 1.46431 1.56657 1.65469 2.26171 2.54651 2.90077 3.36487 3.53523 3.57213 3.61362 3.69877 3.71881 3.83878 3.87863 3.97296 4.02808 4.04432 4.15562 4.16242 4.32231 4.34869 4.40944 4.48623 4.51352 4.60873 4.67633 4.72511 4.78159 4.80120 4.83336 4.90294 4.94531 4.96142 4.96742 4.98418 5.09892 5.11270 5.13245 5.16897 5.18661 5.20028 5.26347 5.31533 5.36936 5.44267 5.59926 5.64044 5.71623 6.03350 6.27910 6.61828 7.31488 7.32031 8.12293 8.33582 9.28211 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013152 B = 0.002006 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.408289 B =13953.125694 C =15413.348218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.062 3.938 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.154 4.154 6 C 0.076 3.924 7 H 0.091 0.909 8 C -0.095 4.095 9 C -0.128 4.128 10 C 0.505 3.495 11 O -0.593 6.593 12 N -0.707 5.707 13 C 0.128 3.872 14 C -0.128 4.128 15 C -0.088 4.088 16 C -0.142 4.142 17 C 0.141 3.859 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.080 0.920 21 C -0.082 4.082 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.263 1.263 25 H -0.295 1.295 26 H -0.295 1.295 27 C -0.126 4.126 28 C -0.104 4.104 29 O -0.394 6.394 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.417 0.583 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.104 0.896 46 H 0.042 0.958 47 H 0.061 0.939 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.043 0.957 51 H 0.114 0.886 52 H 0.092 0.908 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 23.391 -17.600 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.005 3.995 3 H 0.099 0.901 4 C -0.187 4.187 5 C -0.191 4.191 6 C 0.019 3.981 7 H 0.108 0.892 8 C -0.133 4.133 9 C -0.167 4.167 10 C 0.293 3.707 11 O -0.473 6.473 12 N -0.358 5.358 13 C 0.023 3.977 14 C -0.167 4.167 15 C -0.089 4.089 16 C -0.182 4.182 17 C 0.032 3.968 18 N -0.360 5.360 19 C -0.370 4.370 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.222 1.222 26 H -0.223 1.223 27 C -0.164 4.164 28 C -0.141 4.141 29 O -0.315 6.315 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.144 0.856 41 H 0.254 0.746 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.122 0.878 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.205 0.795 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.132 0.868 52 H 0.111 0.889 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.305 22.506 -17.569 30.029 hybrid contribution -1.329 -0.810 0.288 1.583 sum 7.976 21.696 -17.281 28.861 Atomic orbital electron populations 1.21833 0.93109 1.02411 1.03135 1.23163 0.95613 0.95884 0.84866 0.90080 1.23041 0.97309 0.99940 0.98403 1.23040 0.99547 1.01263 0.95293 1.23088 0.84463 0.96822 0.93745 0.89160 1.21357 1.01848 0.96780 0.93345 1.21649 1.04483 0.96233 0.94372 1.21460 0.75889 0.90300 0.83030 1.90692 1.53260 1.29509 1.73855 1.45953 1.67814 1.14409 1.07671 1.22356 0.95633 0.89687 0.90059 1.23104 0.97200 0.99929 0.96492 1.21973 0.96758 0.96202 0.93937 1.23449 1.00626 0.98863 0.95285 1.21487 0.86493 0.92354 0.96511 1.42383 1.21448 1.63939 1.08190 1.19766 1.00990 1.25563 0.90717 0.90258 1.25620 0.99696 1.03253 0.98773 1.69856 1.21840 1.50576 1.20137 0.85036 0.78188 0.77346 0.78983 1.18671 1.22197 1.22258 1.23176 0.99896 0.95339 0.97997 1.23088 1.00108 0.98972 0.91964 1.89155 1.27821 1.75061 1.39444 0.92312 0.89240 0.93071 0.91108 0.88627 0.88587 0.91670 0.89871 0.93379 0.87925 0.85566 0.74596 0.89190 0.90291 0.95049 0.87775 0.93909 0.92065 0.79512 0.94189 0.93833 0.86761 0.88929 0.87324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.53 71.98 0.69 -1.21 16 2 C 0.06 0.84 3.92 31.10 0.12 0.97 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.15 -1.70 6.64 31.67 0.21 -1.49 16 5 C -0.15 -1.99 6.65 31.67 0.21 -1.77 16 6 C 0.08 1.16 3.25 31.09 0.10 1.26 16 7 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 8 C -0.10 -1.86 4.13 30.59 0.13 -1.73 16 9 C -0.13 -2.25 5.63 29.85 0.17 -2.08 16 10 C 0.50 13.12 7.83 87.66 0.69 13.81 16 11 O -0.59 -21.47 15.58 -3.03 -0.05 -21.52 16 12 N -0.71 -15.75 5.35 -439.52 -2.35 -18.11 16 13 C 0.13 3.49 4.24 45.63 0.19 3.68 16 14 C -0.13 -4.42 7.18 30.88 0.22 -4.20 16 15 C -0.09 -2.64 1.02 -52.31 -0.05 -2.69 16 16 C -0.14 -4.64 7.64 30.89 0.24 -4.40 16 17 C 0.14 5.66 4.56 45.63 0.21 5.86 16 18 N -0.72 -37.78 5.30 -319.91 -1.70 -39.48 16 19 C -0.24 -13.63 9.97 84.04 0.84 -12.79 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 22 N -0.97 -62.23 13.06 21.65 0.28 -61.95 16 23 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 27 C -0.13 -4.12 7.59 30.89 0.23 -3.88 16 28 C -0.10 -2.19 7.59 30.89 0.23 -1.96 16 29 O -0.39 -7.66 10.75 -148.98 -1.60 -9.27 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 33 H 0.07 0.88 7.86 -2.39 -0.02 0.86 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.02 7.87 -2.38 -0.02 1.00 16 37 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 38 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 39 H 0.10 1.80 7.96 -2.39 -0.02 1.78 16 40 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.42 6.21 8.72 -92.71 -0.81 5.40 16 42 H 0.09 2.89 7.47 -2.39 -0.02 2.88 16 43 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.03 1.34 7.47 -2.39 -0.02 1.33 16 45 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 2.40 8.10 -2.39 -0.02 2.38 16 48 H 0.37 21.30 6.76 -92.71 -0.63 20.67 16 49 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 50 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 52 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.11 1.80 8.12 -2.38 -0.02 1.78 16 Total: -1.00 -77.47 420.42 0.95 -76.51 By element: Atomic # 1 Polarization: 41.79 SS G_CDS: -0.55 Total: 41.24 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.89 Total: -17.01 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -3.77 Total: -119.54 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.65 Total: -30.79 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -77.47 0.95 -76.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122220500.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.447 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds