Wall clock time and date at job start Tue Mar 31 2020 20:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.33077 * 2 1 4 4 C 1.54478 * 110.37112 * 122.25336 * 2 1 3 5 5 C 1.54509 * 104.06248 * 142.80529 * 4 2 1 6 6 C 1.54484 * 104.06351 * 0.02562 * 5 4 2 7 7 H 1.09005 * 110.37226 * 94.96016 * 6 5 4 8 8 C 1.53002 * 110.36835 * 217.18742 * 6 5 4 9 9 C 1.53000 * 109.46570 * 183.44839 * 8 6 5 10 10 C 1.50699 * 109.46910 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00135 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99968 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99824 * 180.02562 * 12 10 9 14 14 C 1.53947 * 113.57978 * 155.00064 * 13 12 10 15 15 C 1.52912 * 86.78152 * 89.86949 * 14 13 12 16 16 C 1.52912 * 121.13581 * 150.61838 * 15 14 13 17 17 C 1.53950 * 86.78431 * 100.81851 * 16 15 14 18 18 N 1.46499 * 113.57890 * 139.33549 * 17 16 15 19 19 C 1.36939 * 119.99933 * 155.27808 * 18 17 16 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 17 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 17 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47144 * 90.00258 * 23 21 19 25 25 H 1.48500 * 109.47140 * 210.00775 * 23 21 19 26 26 H 1.48502 * 109.46967 * 330.00206 * 23 21 19 27 27 C 1.52909 * 121.13664 * 259.17832 * 15 14 13 28 28 C 1.52910 * 88.04319 * 24.90083 * 15 14 13 29 29 O 1.44426 * 104.89729 * 336.07049 * 6 5 4 30 30 H 1.09003 * 109.47113 * 297.74894 * 1 2 3 31 31 H 1.09006 * 109.47074 * 57.74792 * 1 2 3 32 32 H 1.08998 * 109.47284 * 177.74700 * 1 2 3 33 33 H 1.08998 * 110.50918 * 24.16421 * 4 2 1 34 34 H 1.08997 * 110.62636 * 261.50998 * 4 2 1 35 35 H 1.08998 * 110.51424 * 241.35465 * 5 4 2 36 36 H 1.09002 * 110.62422 * 118.69713 * 5 4 2 37 37 H 1.09001 * 109.46935 * 63.45186 * 8 6 5 38 38 H 1.08993 * 109.46833 * 303.44502 * 8 6 5 39 39 H 1.08996 * 109.47340 * 60.00071 * 9 8 6 40 40 H 1.09005 * 109.47507 * 299.99664 * 9 8 6 41 41 H 0.96994 * 119.99852 * 0.02562 * 12 10 9 42 42 H 1.08998 * 112.88135 * 23.85696 * 13 12 10 43 43 H 1.09003 * 113.66369 * 335.39838 * 14 13 12 44 44 H 1.09000 * 113.74428 * 204.35343 * 14 13 12 45 45 H 1.09006 * 113.66019 * 346.35031 * 16 15 14 46 46 H 1.08999 * 113.66472 * 215.29390 * 16 15 14 47 47 H 1.08997 * 113.58087 * 270.05156 * 17 16 15 48 48 H 0.97001 * 119.99790 * 334.99782 * 18 17 16 49 49 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 50 50 H 1.08991 * 113.66253 * 144.70516 * 27 15 14 51 51 H 1.09002 * 113.66013 * 13.65077 * 27 15 14 52 52 H 1.08993 * 113.66359 * 89.57294 * 28 15 14 53 53 H 1.08999 * 113.65667 * 220.63211 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7728 1.2247 5 6 3.3177 -1.5051 0.6873 6 6 3.3876 -1.0875 -0.7983 7 1 4.0545 -0.2341 -0.9217 8 6 3.8604 -2.2605 -1.6595 9 6 4.0046 -1.8012 -3.1118 10 6 4.4696 -2.9567 -3.9602 11 8 4.6658 -4.0409 -3.4532 12 7 4.6674 -2.7852 -5.2823 13 6 5.1190 -3.9086 -6.1071 14 6 4.7307 -3.7782 -7.5911 15 6 6.0616 -3.0510 -7.7863 16 6 6.8054 -3.1081 -9.1211 17 6 6.2314 -1.7074 -9.4019 18 7 7.1897 -0.7973 -10.0341 19 6 6.7406 0.2537 -10.7884 20 1 5.6801 0.4089 -10.9209 21 6 7.6484 1.1194 -11.3826 22 7 8.9409 0.9299 -11.2214 23 14 7.0359 2.5526 -12.4122 24 1 6.8488 3.7421 -11.5432 25 1 8.0311 2.8636 -13.4696 26 1 5.7407 2.1914 -13.0424 27 6 6.1235 -1.5259 -7.8769 28 6 6.5869 -3.7920 -6.5562 29 8 2.0341 -0.7223 -1.1455 30 1 -0.3633 0.4785 0.9095 31 1 -0.3633 0.5484 -0.8692 32 1 -0.3634 -1.0268 -0.0404 33 1 1.3275 -1.4903 1.5787 34 1 2.3426 -0.0837 2.0232 35 1 3.1954 -2.5846 0.7757 36 1 4.2119 -1.1782 1.2180 37 1 3.1309 -3.0686 -1.6047 38 1 4.8237 -2.6150 -1.2932 39 1 4.7339 -0.9931 -3.1666 40 1 3.0411 -1.4466 -3.4782 41 1 4.5109 -1.9180 -5.6877 42 1 4.8710 -4.8781 -5.6752 43 1 3.8584 -3.1472 -7.7613 44 1 4.6725 -4.7322 -8.1151 45 1 6.4323 -3.8773 -9.7973 46 1 7.8904 -3.1234 -9.0171 47 1 5.2670 -1.7252 -9.9095 48 1 8.1422 -0.9368 -9.9149 49 1 9.5753 1.5347 -11.6369 50 1 7.0166 -1.0965 -7.4231 51 1 5.2056 -1.0312 -7.5592 52 1 7.0510 -4.7506 -6.7880 53 1 7.1973 -3.1719 -5.8997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122220501.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:45 Heat of formation + Delta-G solvation = -67.751403 kcal Electronic energy + Delta-G solvation = -28785.992720 eV Core-core repulsion = 24850.548591 eV Total energy + Delta-G solvation = -3935.444128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.79894 -40.67079 -40.03715 -37.21996 -35.12508 -34.88864 -33.53855 -33.14751 -31.69551 -31.22769 -27.62546 -26.75518 -26.55986 -26.10290 -24.45984 -23.34105 -22.31834 -21.71930 -21.43655 -21.07073 -19.39343 -18.72130 -18.12941 -17.49388 -17.05956 -16.89005 -16.84623 -16.25308 -16.03811 -15.86853 -15.69913 -15.27043 -15.06946 -14.66323 -14.40281 -14.26128 -14.03361 -13.84587 -13.60805 -13.44207 -13.32171 -13.07175 -12.99042 -12.87577 -12.85849 -12.61921 -12.53012 -12.39309 -12.17043 -12.06938 -12.00769 -11.85184 -11.80339 -11.65456 -11.48646 -11.19222 -11.14137 -10.86579 -10.78310 -10.65574 -10.61015 -9.97675 -8.95871 -7.93416 -5.21372 1.47929 1.49322 1.57711 1.64118 2.20655 2.57433 2.89853 3.38090 3.52956 3.55735 3.62482 3.70261 3.72240 3.84838 3.90585 3.97446 3.99460 4.04057 4.16075 4.32120 4.33065 4.36646 4.42213 4.50336 4.55569 4.63372 4.65673 4.68688 4.73650 4.82355 4.84880 4.90782 4.95592 4.96088 4.97256 4.98655 5.03108 5.09228 5.10912 5.16461 5.18247 5.20471 5.23330 5.26811 5.31729 5.45368 5.56463 5.67053 5.77832 6.01720 6.29050 6.57479 7.26367 7.34490 8.13103 8.35219 9.30010 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.002009 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.386761 B =13933.805092 C =15568.068807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.073 3.927 7 H 0.080 0.920 8 C -0.090 4.090 9 C -0.134 4.134 10 C 0.513 3.487 11 O -0.584 6.584 12 N -0.704 5.704 13 C 0.124 3.876 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.132 4.132 17 C 0.148 3.852 18 N -0.729 5.729 19 C -0.240 4.240 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.268 1.268 27 C -0.130 4.130 28 C -0.135 4.135 29 O -0.391 6.391 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.410 0.590 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.098 0.902 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 -6.194 24.940 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.003 3.997 3 H 0.092 0.908 4 C -0.186 4.186 5 C -0.190 4.190 6 C 0.016 3.984 7 H 0.098 0.902 8 C -0.128 4.128 9 C -0.173 4.173 10 C 0.302 3.698 11 O -0.464 6.464 12 N -0.355 5.355 13 C 0.018 3.982 14 C -0.147 4.147 15 C -0.091 4.091 16 C -0.171 4.171 17 C 0.038 3.962 18 N -0.367 5.367 19 C -0.372 4.372 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.193 1.193 27 C -0.171 4.171 28 C -0.173 4.173 29 O -0.311 6.311 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.247 0.753 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.130 0.870 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.078 0.922 51 H 0.086 0.914 52 H 0.117 0.883 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.504 -6.885 24.972 30.189 hybrid contribution 0.695 1.231 -0.819 1.633 sum -14.809 -5.654 24.153 28.890 Atomic orbital electron populations 1.21818 0.92737 1.02621 1.03108 1.23168 0.95864 0.95695 0.84984 0.90811 1.22998 0.97412 0.99949 0.98213 1.22995 0.99440 1.01563 0.95002 1.23087 0.84508 0.96788 0.94055 0.90228 1.21323 1.02000 0.96753 0.92746 1.21665 1.04385 0.96314 0.94954 1.21214 0.75835 0.90226 0.82548 1.90662 1.53493 1.28975 1.73316 1.45773 1.67631 1.14262 1.07872 1.21785 0.94862 0.90534 0.91021 1.23045 0.96019 1.01754 0.93853 1.22194 0.97302 0.95253 0.94333 1.23161 0.99484 0.97705 0.96744 1.21933 0.93148 0.89547 0.91547 1.42634 1.04879 1.30399 1.58749 1.19715 0.92456 1.03241 1.21760 0.90420 1.25583 0.95537 1.02704 1.03393 1.69826 1.01134 1.40705 1.50578 0.85151 0.77193 0.79504 0.78005 1.21451 1.22489 1.19322 1.23335 1.00754 0.93658 0.99340 1.23249 0.96467 1.01101 0.96507 1.89151 1.27727 1.74940 1.39314 0.89401 0.92367 0.92513 0.90529 0.89003 0.90969 0.89110 0.92131 0.90092 0.87085 0.87567 0.75301 0.88930 0.90074 0.87005 0.90889 0.91614 0.90691 0.79667 0.94159 0.92151 0.91419 0.88338 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.52 71.98 0.69 -0.93 16 2 C 0.06 0.78 3.92 31.10 0.12 0.90 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.15 -1.51 6.63 31.61 0.21 -1.30 16 5 C -0.15 -1.80 6.63 31.61 0.21 -1.59 16 6 C 0.07 1.08 3.26 31.10 0.10 1.19 16 7 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 8 C -0.09 -1.59 4.14 30.59 0.13 -1.46 16 9 C -0.13 -2.30 5.63 29.85 0.17 -2.13 16 10 C 0.51 11.95 7.83 87.66 0.69 12.63 16 11 O -0.58 -17.89 15.58 -3.04 -0.05 -17.94 16 12 N -0.70 -14.86 5.26 -439.50 -2.31 -17.17 16 13 C 0.12 2.73 4.31 45.63 0.20 2.93 16 14 C -0.11 -2.21 7.59 30.88 0.23 -1.98 16 15 C -0.09 -2.30 1.02 -52.31 -0.05 -2.35 16 16 C -0.13 -4.13 7.59 30.89 0.23 -3.89 16 17 C 0.15 5.58 4.48 45.63 0.20 5.79 16 18 N -0.73 -36.48 5.40 -319.92 -1.73 -38.20 16 19 C -0.24 -13.18 9.97 84.03 0.84 -12.34 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 22 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 23 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 C -0.13 -4.09 7.18 30.89 0.22 -3.86 16 28 C -0.13 -3.21 7.64 30.89 0.24 -2.97 16 29 O -0.39 -7.12 10.76 -148.98 -1.60 -8.73 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.77 7.87 -2.39 -0.02 0.75 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 38 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.73 7.96 -2.38 -0.02 1.71 16 41 H 0.41 7.53 7.57 -92.71 -0.70 6.82 16 42 H 0.09 2.21 7.47 -2.39 -0.02 2.19 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 47 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 48 H 0.37 20.21 7.92 -92.71 -0.73 19.47 16 49 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.07 1.88 7.47 -2.39 -0.02 1.86 16 52 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 53 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -69.76 420.43 0.96 -68.80 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.55 Total: 40.20 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.89 Total: -15.53 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -3.75 Total: -114.76 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.65 Total: -26.66 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -69.76 0.96 -68.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122220501.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.051 kcal (2) G-P(sol) polarization free energy of solvation -69.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds