Wall clock time and date at job start Tue Mar 31 2020 21:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.51315 * 2 1 4 4 C 1.53280 * 109.51138 * 239.90286 * 2 1 3 5 5 N 1.47174 * 108.55352 * 186.99425 * 4 2 1 6 6 C 1.34776 * 121.07288 * 230.98398 * 5 4 2 7 7 O 1.21624 * 119.99430 * 174.99567 * 6 5 4 8 8 C 1.47099 * 120.00553 * 354.99090 * 6 5 4 9 9 C 1.32987 * 120.00018 * 186.73246 * 8 6 5 10 10 C 1.50699 * 120.00322 * 8.99284 * 9 8 6 11 11 C 1.53000 * 109.46751 * 48.58605 * 10 9 8 12 12 C 1.53000 * 109.47137 * 168.58496 * 10 9 8 13 13 C 1.52992 * 109.47224 * 288.58559 * 10 9 8 14 14 C 1.47325 * 117.84134 * 51.25367 * 5 4 2 15 15 C 1.52353 * 108.43551 * 310.84828 * 14 5 4 16 16 C 1.54363 * 110.40940 * 173.50863 * 15 14 5 17 17 C 1.54464 * 102.87787 * 152.38873 * 16 15 14 18 18 N 1.47082 * 107.29427 * 338.50291 * 17 16 15 19 19 C 1.36930 * 125.63008 * 178.98941 * 18 17 16 20 20 H 1.08000 * 120.00261 * 180.02562 * 19 18 17 21 21 C 1.38819 * 120.00041 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00161 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00055 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47237 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46986 * 120.00392 * 23 21 19 26 26 H 1.48502 * 109.47074 * 240.00084 * 23 21 19 27 27 C 1.47572 * 108.73997 * 359.00678 * 18 17 16 28 28 O 1.41879 * 111.46839 * 49.98598 * 15 14 5 29 29 H 1.09005 * 109.47219 * 180.09898 * 1 2 3 30 30 H 1.08996 * 109.47174 * 300.09638 * 1 2 3 31 31 H 1.09000 * 109.47815 * 60.10184 * 1 2 3 32 32 H 1.09000 * 109.62767 * 67.27122 * 4 2 1 33 33 H 1.09003 * 109.62516 * 306.70934 * 4 2 1 34 34 H 1.07997 * 120.00019 * 6.72965 * 8 6 5 35 35 H 1.08004 * 119.99944 * 188.99432 * 9 8 6 36 36 H 1.08997 * 109.47364 * 95.08418 * 11 10 9 37 37 H 1.09008 * 109.46960 * 215.08091 * 11 10 9 38 38 H 1.08999 * 109.47351 * 335.07812 * 11 10 9 39 39 H 1.08997 * 109.47408 * 60.00323 * 12 10 9 40 40 H 1.09005 * 109.46677 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47212 * 299.99797 * 12 10 9 42 42 H 1.08998 * 109.47320 * 29.05650 * 13 10 9 43 43 H 1.09001 * 109.47152 * 149.05400 * 13 10 9 44 44 H 1.09004 * 109.47201 * 269.05373 * 13 10 9 45 45 H 1.08999 * 109.64508 * 70.53329 * 14 5 4 46 46 H 1.09005 * 109.63927 * 191.16020 * 14 5 4 47 47 H 1.08994 * 110.73338 * 270.73789 * 16 15 14 48 48 H 1.09002 * 110.72912 * 34.04222 * 16 15 14 49 49 H 1.08992 * 109.87560 * 97.93123 * 17 16 15 50 50 H 1.08999 * 109.87663 * 218.92918 * 17 16 15 51 51 H 0.96995 * 120.00294 * 180.02562 * 22 21 19 52 52 H 1.09004 * 110.37452 * 264.49092 * 27 18 17 53 53 H 1.09001 * 110.37476 * 142.14593 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5037 -0.8609 -1.1465 6 6 4.3113 -0.4766 -2.1547 7 8 5.5188 -0.5128 -2.0141 8 6 3.7324 -0.0134 -3.4252 9 6 4.5237 0.2380 -4.4640 10 6 5.9813 -0.1410 -4.4101 11 6 6.1148 -1.5865 -3.9268 12 6 6.5940 -0.0113 -5.8060 13 6 6.7149 0.7901 -3.4427 14 6 4.0550 -1.4367 0.0924 15 6 3.4226 -0.7209 1.2794 16 6 3.8445 -1.3958 2.6020 17 6 3.7654 -0.2370 3.6203 18 7 3.8530 1.0194 2.8606 19 6 3.8006 2.2794 3.3941 20 1 3.8737 3.1424 2.7489 21 6 3.6537 2.4475 4.7642 22 7 3.5652 1.3958 5.5505 23 14 3.5815 4.1665 5.4918 24 1 3.7017 5.1701 4.4039 25 1 2.2869 4.3523 6.1953 26 1 4.6980 4.3436 6.4548 27 6 4.0061 0.6978 1.4285 28 8 2.0090 -0.6770 1.1664 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3633 0.5153 0.8891 31 1 -0.3635 0.5122 -0.8909 32 1 1.7903 -0.1447 -2.1381 33 1 1.5857 -1.7125 -1.3131 34 1 2.6647 0.1224 -3.5145 35 1 4.1218 0.7138 -5.3464 36 1 6.1876 -2.2520 -4.7869 37 1 7.0119 -1.6837 -3.3152 38 1 5.2402 -1.8536 -3.3337 39 1 6.4989 1.0185 -6.1504 40 1 7.6482 -0.2859 -5.7670 41 1 6.0714 -0.6747 -6.4952 42 1 6.0241 1.1294 -2.6709 43 1 7.5425 0.2533 -2.9791 44 1 7.1006 1.6508 -3.9890 45 1 3.8202 -2.5002 0.1384 46 1 5.1357 -1.2958 0.1127 47 1 3.1488 -2.1915 2.8682 48 1 4.8625 -1.7792 2.5320 49 1 2.8182 -0.2800 4.1578 50 1 4.5945 -0.3054 4.3246 51 1 3.4621 1.5133 6.5078 52 1 5.0594 0.7064 1.1482 53 1 3.4443 1.4052 0.8185 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131646363.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:45 Heat of formation + Delta-G solvation = -16.217232 kcal Electronic energy + Delta-G solvation = -31844.888757 eV Core-core repulsion = 27911.679318 eV Total energy + Delta-G solvation = -3933.209439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00391 -40.73936 -38.18883 -37.50359 -35.63727 -34.86810 -33.01605 -32.57957 -31.09329 -29.85609 -28.14468 -28.09235 -27.77860 -27.13272 -25.86548 -23.63371 -23.14176 -21.99420 -21.25230 -20.30909 -19.14462 -18.85110 -18.22842 -17.83786 -16.90973 -16.82991 -16.55043 -16.03046 -15.90387 -15.57867 -15.38844 -15.14714 -14.96017 -14.87077 -14.50360 -14.31316 -14.01024 -13.92038 -13.58576 -13.51249 -13.15766 -13.08996 -12.99687 -12.87016 -12.76621 -12.65234 -12.64665 -12.22599 -12.10321 -12.03008 -11.98648 -11.97668 -11.78925 -11.73199 -11.71347 -11.47039 -11.34296 -10.80203 -10.71536 -10.35208 -10.21983 -9.32213 -8.93323 -7.88380 -5.24235 0.47262 1.41408 1.43305 1.53501 1.95932 2.34325 2.45280 2.64441 3.29335 3.45292 3.61100 3.65300 3.76671 3.77560 3.92030 3.97049 4.07534 4.12276 4.18159 4.23034 4.39585 4.45561 4.49939 4.54519 4.63356 4.65148 4.67960 4.72257 4.80467 4.80786 4.86104 4.92597 4.94195 4.95705 4.97016 5.05810 5.11706 5.21964 5.24432 5.27261 5.30740 5.36560 5.37393 5.43966 5.52935 5.55171 5.61088 5.72343 5.76465 6.14741 6.39146 6.47938 7.06072 7.26044 7.71715 8.37081 9.22198 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014118 B = 0.003415 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.749674 B = 8197.384111 C = 8896.913803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.060 3.940 3 H 0.039 0.961 4 C 0.086 3.914 5 N -0.615 5.615 6 C 0.527 3.473 7 O -0.544 6.544 8 C -0.234 4.234 9 C -0.039 4.039 10 C -0.046 4.046 11 C -0.113 4.113 12 C -0.137 4.137 13 C -0.109 4.109 14 C 0.110 3.890 15 C 0.108 3.892 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.620 5.620 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.125 3.875 28 O -0.371 6.371 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.011 0.989 50 H 0.009 0.991 51 H 0.248 0.752 52 H 0.014 0.986 53 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 -7.073 -24.767 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.036 4.036 5 N -0.348 5.348 6 C 0.321 3.679 7 O -0.425 6.425 8 C -0.254 4.254 9 C -0.059 4.059 10 C -0.046 4.046 11 C -0.170 4.170 12 C -0.194 4.194 13 C -0.166 4.166 14 C -0.013 4.013 15 C 0.066 3.934 16 C -0.157 4.157 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.374 4.374 20 H 0.092 0.908 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.808 3.192 24 H -0.192 1.192 25 H -0.215 1.215 26 H -0.216 1.216 27 C -0.001 4.001 28 O -0.290 6.290 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.175 0.825 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.111 0.889 49 H 0.029 0.971 50 H 0.027 0.973 51 H 0.057 0.943 52 H 0.032 0.968 53 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.774 -7.075 -24.369 25.527 hybrid contribution 0.309 1.154 1.325 1.784 sum -2.464 -5.922 -23.044 23.920 Atomic orbital electron populations 1.21694 0.90307 1.03816 1.03268 1.22727 0.96948 0.94939 0.85164 0.94253 1.22671 0.78827 1.02969 0.99162 1.48223 1.07726 1.62687 1.16186 1.19085 0.86234 0.77434 0.85158 1.90934 1.14948 1.53678 1.82895 1.22759 1.01912 1.08352 0.92401 1.24167 0.94077 0.90053 0.97579 1.19733 0.92736 0.95922 0.96207 1.22079 1.01728 0.94210 0.99013 1.21968 1.00716 1.02459 0.94229 1.21860 0.99175 0.97657 0.97879 1.21853 0.99520 0.97630 0.82322 1.22068 0.81847 0.94318 0.95147 1.22724 1.01994 0.98090 0.92913 1.20862 0.97641 0.83302 0.91487 1.44723 1.85810 1.02333 1.01768 1.19402 1.42898 0.83784 0.91334 0.90783 1.25659 1.02261 1.01387 0.96329 1.70193 1.57305 1.28922 1.03246 0.84996 0.76970 0.79122 0.78141 1.19243 1.21509 1.21598 1.21984 0.96499 0.95658 0.85922 1.87808 1.19572 1.76985 1.44628 0.90500 0.93652 0.87752 0.85761 0.88709 0.82472 0.82316 0.93596 0.94274 0.93268 0.91602 0.92834 0.91334 0.93410 0.94311 0.93991 0.89043 0.89442 0.89064 0.88944 0.97074 0.97265 0.94276 0.96796 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.57 71.98 0.69 -2.10 16 2 C 0.06 1.64 3.20 30.69 0.10 1.74 16 3 H 0.04 1.29 6.26 -2.39 -0.01 1.27 16 4 C 0.09 1.68 5.78 86.34 0.50 2.18 16 5 N -0.61 -15.69 2.96 -822.93 -2.43 -18.13 16 6 C 0.53 13.51 5.66 86.57 0.49 14.00 16 7 O -0.54 -16.85 8.12 -4.11 -0.03 -16.89 16 8 C -0.23 -4.12 8.80 23.43 0.21 -3.91 16 9 C -0.04 -0.61 8.52 24.52 0.21 -0.40 16 10 C -0.05 -0.89 0.75 -52.93 -0.04 -0.93 16 11 C -0.11 -2.52 7.58 71.98 0.55 -1.98 16 12 C -0.14 -1.91 8.04 71.98 0.58 -1.33 16 13 C -0.11 -2.71 7.54 71.98 0.54 -2.17 16 14 C 0.11 3.28 5.31 86.01 0.46 3.74 16 15 C 0.11 3.96 0.83 -10.17 -0.01 3.95 16 16 C -0.12 -4.63 6.12 31.55 0.19 -4.44 16 17 C 0.19 10.13 5.38 86.77 0.47 10.60 16 18 N -0.62 -34.38 3.40 -692.75 -2.36 -36.73 16 19 C -0.25 -14.66 10.28 84.04 0.86 -13.80 16 20 H 0.07 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.06 -3.77 5.49 84.86 0.47 -3.30 16 22 N -0.95 -59.21 10.31 21.65 0.22 -58.99 16 23 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 27 C 0.13 5.69 6.19 86.55 0.54 6.22 16 28 O -0.37 -13.42 9.92 -148.95 -1.48 -14.90 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.12 1.59 5.49 -2.39 -0.01 1.58 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.16 1.74 5.98 -2.91 -0.02 1.72 16 35 H 0.16 1.37 8.01 -2.91 -0.02 1.35 16 36 H 0.05 0.85 7.75 -2.39 -0.02 0.84 16 37 H 0.04 1.02 6.99 -2.38 -0.02 1.01 16 38 H 0.05 1.20 4.62 -2.39 -0.01 1.19 16 39 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 40 H 0.05 0.79 8.14 -2.38 -0.02 0.78 16 41 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 42 H 0.05 1.43 5.50 -2.39 -0.01 1.42 16 43 H 0.04 1.08 7.18 -2.39 -0.02 1.07 16 44 H 0.04 0.91 7.80 -2.38 -0.02 0.89 16 45 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.09 2.87 6.83 -2.38 -0.02 2.86 16 47 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.09 3.21 8.00 -2.39 -0.02 3.19 16 49 H 0.01 0.65 7.39 -2.39 -0.02 0.64 16 50 H 0.01 0.53 7.50 -2.39 -0.02 0.52 16 51 H 0.25 14.93 8.31 -92.71 -0.77 14.15 16 52 H 0.01 0.68 7.81 -2.39 -0.02 0.66 16 53 H 0.03 1.46 6.10 -2.39 -0.01 1.45 16 Total: -1.00 -76.14 389.18 3.63 -72.52 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.88 Total: 15.39 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.79 Total: 8.09 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -4.57 Total: -113.85 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -1.51 Total: -31.78 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -76.14 3.63 -72.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131646363.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.300 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds