Wall clock time and date at job start Tue Mar 31 2020 21:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.55537 * 2 1 4 4 C 1.53282 * 109.51210 * 239.87271 * 2 1 3 5 5 N 1.47166 * 108.54411 * 187.19081 * 4 2 1 6 6 C 1.34772 * 121.05874 * 231.08498 * 5 4 2 7 7 O 1.21614 * 120.00521 * 355.36038 * 6 5 4 8 8 C 1.47102 * 119.99708 * 175.36258 * 6 5 4 9 9 C 1.32999 * 120.00314 * 185.26191 * 8 6 5 10 10 C 1.50693 * 120.00080 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47632 * 0.02562 * 10 9 8 12 12 C 1.53007 * 109.47059 * 119.99806 * 10 9 8 13 13 C 1.52995 * 109.47349 * 239.99518 * 10 9 8 14 14 C 1.47313 * 117.87462 * 51.10996 * 5 4 2 15 15 C 1.52518 * 108.38826 * 310.59186 * 14 5 4 16 16 C 1.54509 * 110.05485 * 287.96670 * 15 14 5 17 17 C 1.55027 * 101.51579 * 206.89535 * 16 15 14 18 18 N 1.47489 * 104.89732 * 36.38517 * 17 16 15 19 19 C 1.36941 * 125.65858 * 155.94103 * 18 17 16 20 20 H 1.08002 * 120.00188 * 323.06103 * 19 18 17 21 21 C 1.38815 * 119.99511 * 143.06699 * 19 18 17 22 22 N 1.31625 * 119.99503 * 166.06321 * 21 19 18 23 23 Si 1.86795 * 120.00230 * 346.06083 * 21 19 18 24 24 H 1.48506 * 109.46957 * 84.98108 * 23 21 19 25 25 H 1.48504 * 109.47140 * 204.97806 * 23 21 19 26 26 H 1.48493 * 109.47373 * 324.98445 * 23 21 19 27 27 C 1.47178 * 108.67557 * 335.97320 * 18 17 16 28 28 O 1.42072 * 111.09414 * 50.47760 * 15 14 5 29 29 H 1.09002 * 109.47590 * 299.88015 * 1 2 3 30 30 H 1.09002 * 109.47540 * 59.88026 * 1 2 3 31 31 H 1.09004 * 109.47413 * 179.88021 * 1 2 3 32 32 H 1.09001 * 109.62550 * 306.91165 * 4 2 1 33 33 H 1.09008 * 109.61972 * 67.28769 * 4 2 1 34 34 H 1.08001 * 120.00165 * 5.25724 * 8 6 5 35 35 H 1.08001 * 119.99521 * 359.97438 * 9 8 6 36 36 H 1.09001 * 109.46882 * 59.99733 * 11 10 9 37 37 H 1.08994 * 109.47424 * 179.97438 * 11 10 9 38 38 H 1.09003 * 109.46818 * 300.00052 * 11 10 9 39 39 H 1.09001 * 109.46742 * 59.99868 * 12 10 9 40 40 H 1.09000 * 109.47291 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.47215 * 300.00120 * 12 10 9 42 42 H 1.09003 * 109.46723 * 60.00179 * 13 10 9 43 43 H 1.09000 * 109.47448 * 180.02562 * 13 10 9 44 44 H 1.09001 * 109.47326 * 300.00667 * 13 10 9 45 45 H 1.09006 * 109.67280 * 190.87172 * 14 5 4 46 46 H 1.09003 * 109.68426 * 70.32271 * 14 5 4 47 47 H 1.09001 * 111.01844 * 324.95533 * 16 15 14 48 48 H 1.09000 * 111.01885 * 88.84140 * 16 15 14 49 49 H 1.09006 * 110.35384 * 155.23753 * 17 16 15 50 50 H 1.08996 * 110.35946 * 277.41854 * 17 16 15 51 51 H 0.96993 * 119.99692 * 180.02562 * 22 21 19 52 52 H 1.09003 * 109.91010 * 242.14500 * 27 18 17 53 53 H 1.09000 * 109.91563 * 120.87586 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0419 -0.7252 -1.2496 5 7 3.5030 -0.8656 -1.1436 6 6 4.3133 -0.4809 -2.1495 7 8 3.8374 -0.0880 -3.1974 8 6 5.7734 -0.5364 -1.9799 9 6 6.5720 -0.0597 -2.9307 10 6 8.0678 -0.1161 -2.7566 11 6 8.4007 -0.7639 -1.4111 12 6 8.6819 -0.9448 -3.8868 13 6 8.6396 1.3024 -2.7957 14 6 4.0515 -1.4405 0.0968 15 6 3.4233 -0.7150 1.2822 16 6 3.9923 0.7176 1.3886 17 6 3.8333 1.0020 2.9043 18 7 4.1106 -0.2881 3.5632 19 6 4.5419 -0.4493 4.8529 20 1 5.2414 0.2538 5.2803 21 6 4.0800 -1.5167 5.6108 22 7 4.6851 -1.8358 6.7353 23 14 2.5998 -2.4998 5.0349 24 1 3.0432 -3.5509 4.0841 25 1 1.9426 -3.1361 6.2048 26 1 1.6370 -1.5944 4.3581 27 6 3.8474 -1.3732 2.6044 28 8 2.0078 -0.6769 1.1667 29 1 -0.3634 0.5120 0.8910 30 1 -0.3634 0.5157 -0.8889 31 1 -0.3634 -1.0277 -0.0021 32 1 1.5830 -1.7118 -1.3142 33 1 1.7905 -0.1456 -2.1380 34 1 6.1971 -0.9642 -1.0833 35 1 6.1483 0.3677 -3.8275 36 1 7.9934 -1.7745 -1.3838 37 1 9.4826 -0.8050 -1.2854 38 1 7.9632 -0.1739 -0.6057 39 1 8.4447 -0.4837 -4.8456 40 1 9.7638 -0.9852 -3.7612 41 1 8.2745 -1.9554 -3.8590 42 1 8.2021 1.8928 -1.9906 43 1 9.7216 1.2617 -2.6703 44 1 8.4024 1.7635 -3.7545 45 1 5.1332 -1.3073 0.1161 46 1 3.8110 -2.5025 0.1470 47 1 5.0413 0.7445 1.0937 48 1 3.4031 1.4173 0.7958 49 1 4.5531 1.7546 3.2263 50 1 2.8178 1.3312 3.1239 51 1 4.3626 -2.5818 7.2647 52 1 3.0449 -2.0104 2.9759 53 1 4.7521 -1.9619 2.4524 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131646364.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:49 Heat of formation + Delta-G solvation = -52.099682 kcal Electronic energy + Delta-G solvation = -31430.533051 eV Core-core repulsion = 27495.767632 eV Total energy + Delta-G solvation = -3934.765419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.97482 -40.30094 -38.67827 -37.99556 -35.96731 -34.80099 -33.54649 -32.48536 -31.30550 -30.26477 -28.22988 -28.08931 -28.07274 -27.33724 -25.54917 -24.22572 -23.02753 -22.20286 -21.04432 -20.20489 -19.25559 -19.02040 -18.58009 -18.08359 -17.41518 -16.98184 -16.43054 -16.18607 -15.95166 -15.69661 -15.58170 -15.06378 -15.02729 -14.97465 -14.70422 -14.56352 -14.31946 -14.02730 -13.81882 -13.54381 -13.32116 -13.20858 -13.17142 -12.96382 -12.92739 -12.77111 -12.67033 -12.53797 -12.42676 -12.35025 -12.18323 -11.94332 -11.93746 -11.86812 -11.74639 -11.60987 -11.45522 -10.98762 -10.85679 -10.74689 -10.45231 -9.59953 -8.83393 -8.23513 -5.66917 0.34323 1.27764 1.38202 1.52329 1.76498 2.20383 2.37870 2.48308 3.05211 3.19148 3.31209 3.53662 3.63350 3.70112 3.80119 3.83816 3.91836 4.00234 4.05465 4.07882 4.21211 4.31679 4.36193 4.41314 4.43586 4.53375 4.58600 4.61067 4.67021 4.76378 4.79758 4.79900 4.82220 4.91437 4.93951 4.96347 5.01134 5.02781 5.03539 5.10253 5.14110 5.22113 5.22628 5.26306 5.33031 5.43332 5.46322 5.56276 5.80585 6.10942 6.22792 6.25494 6.75149 7.02128 7.46881 8.12331 8.96424 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.004004 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.505404 B = 6991.686004 C = 8670.619703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.066 0.934 4 C 0.086 3.914 5 N -0.607 5.607 6 C 0.551 3.449 7 O -0.583 6.583 8 C -0.238 4.238 9 C -0.034 4.034 10 C -0.047 4.047 11 C -0.153 4.153 12 C -0.137 4.137 13 C -0.139 4.139 14 C 0.097 3.903 15 C 0.101 3.899 16 C -0.137 4.137 17 C 0.130 3.870 18 N -0.622 5.622 19 C -0.240 4.240 20 H 0.055 0.945 21 C -0.016 4.016 22 N -0.950 5.950 23 Si 0.951 3.049 24 H -0.268 1.268 25 H -0.307 1.307 26 H -0.274 1.274 27 C 0.130 3.870 28 O -0.379 6.379 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.050 0.950 50 H 0.017 0.983 51 H 0.265 0.735 52 H 0.020 0.980 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.875 2.815 -23.518 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.036 4.036 5 N -0.338 5.338 6 C 0.344 3.656 7 O -0.466 6.466 8 C -0.258 4.258 9 C -0.054 4.054 10 C -0.047 4.047 11 C -0.210 4.210 12 C -0.194 4.194 13 C -0.196 4.196 14 C -0.026 4.026 15 C 0.060 3.940 16 C -0.175 4.175 17 C 0.006 3.994 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.073 0.927 21 C -0.213 4.213 22 N -0.595 5.595 23 Si 0.781 3.219 24 H -0.195 1.195 25 H -0.236 1.236 26 H -0.200 1.200 27 C 0.005 3.995 28 O -0.299 6.299 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.165 0.835 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.137 0.863 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.069 0.931 50 H 0.035 0.965 51 H 0.075 0.925 52 H 0.037 0.963 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.526 2.828 -23.707 24.008 hybrid contribution -0.789 -0.504 0.534 1.078 sum 1.737 2.324 -23.173 23.354 Atomic orbital electron populations 1.21725 0.90594 1.03590 1.03629 1.22715 0.96795 0.95562 0.84003 0.91650 1.22356 0.79543 1.02341 0.99375 1.48066 1.07068 1.62212 1.16448 1.18975 0.88460 0.75918 0.82198 1.90731 1.78024 1.49823 1.27999 1.22822 0.90803 1.08847 1.03361 1.23887 0.95463 0.89813 0.96275 1.19837 0.90054 0.97506 0.97267 1.22056 1.02674 1.00730 0.95521 1.21831 1.01327 0.99253 0.97001 1.21841 1.01566 0.93870 1.02301 1.22344 1.00605 0.98090 0.81575 1.22078 0.81791 0.96100 0.93985 1.23170 1.02312 0.95974 0.96057 1.21768 0.97471 0.88627 0.91573 1.44734 1.79122 1.01955 1.09142 1.18469 1.19555 1.11911 0.86992 0.92747 1.26003 0.99739 1.00301 0.95252 1.69881 1.42259 1.30542 1.16827 0.85805 0.81588 0.78807 0.75691 1.19456 1.23573 1.20015 1.21575 0.98030 0.91909 0.87947 1.87929 1.20074 1.77598 1.44258 0.92057 0.88324 0.91479 0.90052 0.87997 0.83467 0.86556 0.92025 0.91041 0.92440 0.91953 0.90719 0.92648 0.92887 0.90745 0.91890 0.86291 0.89543 0.88892 0.89592 0.93145 0.96518 0.92547 0.96275 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.57 71.98 0.69 -2.09 16 2 C 0.07 1.67 3.18 30.69 0.10 1.77 16 3 H 0.07 1.64 6.13 -2.39 -0.01 1.62 16 4 C 0.09 2.02 5.89 86.35 0.51 2.53 16 5 N -0.61 -15.01 2.91 -822.67 -2.40 -17.40 16 6 C 0.55 14.33 7.65 86.57 0.66 15.00 16 7 O -0.58 -18.45 15.73 -4.08 -0.06 -18.51 16 8 C -0.24 -4.90 8.32 23.43 0.20 -4.71 16 9 C -0.03 -0.63 8.33 24.52 0.20 -0.43 16 10 C -0.05 -0.64 0.99 -52.93 -0.05 -0.70 16 11 C -0.15 -2.15 7.13 71.98 0.51 -1.64 16 12 C -0.14 -1.59 8.45 71.98 0.61 -0.98 16 13 C -0.14 -1.73 8.46 71.98 0.61 -1.12 16 14 C 0.10 2.42 5.08 86.06 0.44 2.86 16 15 C 0.10 3.23 0.83 -10.22 -0.01 3.22 16 16 C -0.14 -4.14 5.91 31.80 0.19 -3.95 16 17 C 0.13 5.12 7.24 86.88 0.63 5.75 16 18 N -0.62 -29.64 2.96 -692.48 -2.05 -31.69 16 19 C -0.24 -13.75 10.53 84.03 0.88 -12.87 16 20 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 21 C -0.02 -0.95 5.47 84.86 0.46 -0.49 16 22 N -0.95 -59.27 13.97 21.65 0.30 -58.97 16 23 Si 0.95 48.19 24.62 68.60 1.69 49.88 16 24 H -0.27 -12.70 6.87 99.48 0.68 -12.02 16 25 H -0.31 -15.59 7.11 99.48 0.71 -14.89 16 26 H -0.27 -14.10 7.05 99.48 0.70 -13.40 16 27 C 0.13 5.35 5.34 86.47 0.46 5.81 16 28 O -0.38 -12.58 9.87 -148.98 -1.47 -14.05 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.10 2.35 7.12 -2.38 -0.02 2.33 16 34 H 0.15 2.64 3.63 -2.91 -0.01 2.63 16 35 H 0.12 2.34 7.50 -2.91 -0.02 2.32 16 36 H 0.06 0.86 7.50 -2.39 -0.02 0.84 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.89 7.50 -2.39 -0.02 0.87 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.12 2.52 5.22 -2.38 -0.01 2.51 16 46 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.09 2.51 7.86 -2.39 -0.02 2.49 16 48 H 0.09 2.35 5.98 -2.39 -0.01 2.34 16 49 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 50 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 52 H 0.02 0.90 3.41 -2.39 -0.01 0.89 16 53 H 0.06 2.42 7.79 -2.39 -0.02 2.40 16 Total: -1.00 -71.98 399.46 3.96 -68.02 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.85 Total: 14.73 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 7.09 Total: 7.99 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.14 Total: -108.06 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.53 Total: -32.56 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.69 Total: 49.88 kcal Total: -71.98 3.96 -68.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131646364.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.923 kcal (2) G-P(sol) polarization free energy of solvation -71.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds