Wall clock time and date at job start Tue Mar 31 2020 21:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51290 * 2 1 4 4 C 1.53278 * 109.50589 * 239.90301 * 2 1 3 5 5 N 1.47174 * 108.53215 * 187.13661 * 4 2 1 6 6 C 1.34773 * 121.06441 * 231.10463 * 5 4 2 7 7 O 1.21616 * 119.99305 * 5.21874 * 6 5 4 8 8 C 1.47098 * 120.00219 * 185.22147 * 6 5 4 9 9 C 1.32997 * 119.99923 * 175.02051 * 8 6 5 10 10 C 1.50699 * 119.99921 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47101 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.47271 * 240.00496 * 10 9 8 13 13 C 1.53007 * 109.46839 * 120.00147 * 10 9 8 14 14 C 1.47308 * 117.87810 * 51.37577 * 5 4 2 15 15 C 1.52935 * 108.18207 * 310.28955 * 14 5 4 16 16 C 1.54493 * 110.02451 * 173.16305 * 15 14 5 17 17 C 1.55021 * 101.52787 * 153.17565 * 16 15 14 18 18 N 1.47483 * 104.90971 * 323.64576 * 17 16 15 19 19 C 1.36938 * 125.66191 * 203.99077 * 18 17 16 20 20 H 1.08005 * 119.99557 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00306 * 0.02562 * 19 18 17 22 22 N 1.31623 * 119.99627 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00077 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47269 * 59.99911 * 23 21 19 25 25 H 1.48499 * 109.46983 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46840 * 299.99662 * 23 21 19 27 27 C 1.47184 * 108.67511 * 24.01083 * 18 17 16 28 28 O 1.42069 * 111.02897 * 50.66690 * 15 14 5 29 29 H 1.08993 * 109.47424 * 180.09374 * 1 2 3 30 30 H 1.09006 * 109.46779 * 300.09884 * 1 2 3 31 31 H 1.09001 * 109.47092 * 60.09170 * 1 2 3 32 32 H 1.08993 * 109.62765 * 67.43069 * 4 2 1 33 33 H 1.08997 * 109.63068 * 306.85065 * 4 2 1 34 34 H 1.07999 * 119.99801 * 355.02606 * 8 6 5 35 35 H 1.07995 * 119.99568 * 0.02562 * 9 8 6 36 36 H 1.09001 * 109.47300 * 299.99707 * 11 10 9 37 37 H 1.09000 * 109.47293 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.47185 * 59.99938 * 11 10 9 39 39 H 1.09000 * 109.46690 * 180.02562 * 12 10 9 40 40 H 1.09002 * 109.46502 * 299.99725 * 12 10 9 41 41 H 1.08998 * 109.47226 * 59.99729 * 12 10 9 42 42 H 1.08994 * 109.46958 * 300.00340 * 13 10 9 43 43 H 1.08996 * 109.46742 * 60.00306 * 13 10 9 44 44 H 1.08995 * 109.46662 * 180.02562 * 13 10 9 45 45 H 1.08999 * 109.68235 * 70.07593 * 14 5 4 46 46 H 1.08996 * 109.68240 * 190.62166 * 14 5 4 47 47 H 1.09001 * 111.01422 * 271.23898 * 16 15 14 48 48 H 1.09001 * 111.01048 * 35.11745 * 16 15 14 49 49 H 1.08996 * 110.35286 * 204.78859 * 17 16 15 50 50 H 1.08999 * 110.44088 * 82.54633 * 17 16 15 51 51 H 0.97005 * 119.99460 * 180.02562 * 22 21 19 52 52 H 1.09002 * 109.90941 * 239.12521 * 27 18 17 53 53 H 1.08997 * 110.07012 * 117.93997 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0418 -0.7245 -1.2500 5 7 3.5031 -0.8638 -1.1446 6 6 4.3129 -0.4779 -2.1505 7 8 3.8475 0.0806 -3.1254 8 6 5.7594 -0.7324 -2.0691 9 6 6.5448 -0.4420 -3.1024 10 6 8.0268 -0.7022 -3.0189 11 6 8.3636 -1.2982 -1.6506 12 6 8.7867 0.6128 -3.2039 13 6 8.4346 -1.6859 -4.1176 14 6 4.0522 -1.4440 0.0931 15 6 3.4243 -0.7147 1.2816 16 6 3.8383 -1.4010 2.6023 17 6 3.7459 -0.2231 3.6059 18 7 4.2034 0.9571 2.8490 19 6 4.7294 2.0989 3.3918 20 1 5.0357 2.9110 2.7489 21 6 4.8689 2.2128 4.7681 22 7 4.4951 1.2233 5.5515 23 14 5.5858 3.7707 5.5085 24 1 4.7374 4.9313 5.1368 25 1 5.6286 3.6417 6.9873 26 1 6.9620 3.9773 4.9902 27 6 4.0002 0.7040 1.4133 28 8 2.0088 -0.6766 1.1664 29 1 -0.3634 -1.0276 0.0017 30 1 -0.3633 0.5154 0.8892 31 1 -0.3633 0.5124 -0.8908 32 1 1.7927 -0.1434 -2.1378 33 1 1.5837 -1.7115 -1.3146 34 1 6.1836 -1.1551 -1.1704 35 1 6.1205 -0.0191 -4.0010 36 1 8.0731 -0.5978 -0.8677 37 1 9.4355 -1.4868 -1.5904 38 1 7.8223 -2.2351 -1.5192 39 1 9.8586 0.4245 -3.1439 40 1 8.5467 1.0370 -4.1789 41 1 8.4961 1.3136 -2.4212 42 1 7.8932 -2.6227 -3.9857 43 1 8.1946 -1.2616 -5.0924 44 1 9.5064 -1.8744 -4.0569 45 1 3.8092 -2.5055 0.1402 46 1 5.1342 -1.3136 0.1111 47 1 3.1396 -2.1950 2.8660 48 1 4.8572 -1.7835 2.5413 49 1 4.3981 -0.4014 4.4608 50 1 2.7167 -0.0853 3.9373 51 1 4.5922 1.3031 6.5134 52 1 4.9524 0.7683 0.8867 53 1 3.2986 1.4293 1.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131646365.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:53 Heat of formation + Delta-G solvation = -52.781148 kcal Electronic energy + Delta-G solvation = -31275.550621 eV Core-core repulsion = 27340.755651 eV Total energy + Delta-G solvation = -3934.794969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.87220 -40.22289 -38.65535 -37.83922 -35.92916 -34.85923 -33.15982 -32.43850 -31.05122 -29.76465 -28.23536 -28.09811 -28.01875 -27.43891 -25.47718 -24.21497 -23.00652 -22.04249 -20.95849 -20.07629 -19.17664 -19.00518 -18.45554 -17.93903 -17.12307 -16.83739 -16.53697 -16.15232 -15.82693 -15.70891 -15.35543 -15.15790 -15.03588 -15.00438 -14.60705 -14.22422 -14.12215 -13.85786 -13.51621 -13.26352 -13.20676 -13.17703 -13.06625 -12.92683 -12.81057 -12.74796 -12.68131 -12.54761 -12.31450 -12.14936 -12.03742 -11.96950 -11.94949 -11.91085 -11.68637 -11.61921 -11.45432 -10.98952 -10.84790 -10.75446 -10.45705 -9.54704 -8.92563 -7.79446 -5.24532 0.33692 1.44783 1.47705 1.54392 1.81694 2.20475 2.47003 2.57632 3.28581 3.34278 3.45744 3.66065 3.75182 3.79837 3.84174 3.90343 4.01838 4.03223 4.07177 4.10194 4.23444 4.34423 4.41921 4.49424 4.56645 4.58746 4.64635 4.67300 4.75398 4.78427 4.79214 4.90552 4.95335 4.98209 4.98433 5.01197 5.02591 5.06226 5.12498 5.16171 5.21917 5.25073 5.32797 5.41835 5.42615 5.47044 5.55316 5.62215 5.79060 6.25109 6.27425 6.30207 7.02748 7.08532 7.73917 8.38191 9.21887 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.008920 B = 0.004085 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.189582 B = 6852.126422 C = 8932.437391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.066 3.934 3 H 0.037 0.963 4 C 0.090 3.910 5 N -0.611 5.611 6 C 0.546 3.454 7 O -0.588 6.588 8 C -0.237 4.237 9 C -0.038 4.038 10 C -0.047 4.047 11 C -0.151 4.151 12 C -0.140 4.140 13 C -0.135 4.135 14 C 0.101 3.899 15 C 0.102 3.898 16 C -0.114 4.114 17 C 0.160 3.840 18 N -0.620 5.620 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.058 4.058 22 N -0.944 5.944 23 Si 0.978 3.022 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.274 1.274 27 C 0.122 3.878 28 O -0.369 6.369 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.080 0.920 50 H -0.020 1.020 51 H 0.249 0.751 52 H 0.030 0.970 53 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -10.467 -17.384 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.055 0.945 4 C -0.033 4.033 5 N -0.342 5.342 6 C 0.339 3.661 7 O -0.471 6.471 8 C -0.257 4.257 9 C -0.058 4.058 10 C -0.047 4.047 11 C -0.208 4.208 12 C -0.197 4.197 13 C -0.192 4.192 14 C -0.022 4.022 15 C 0.061 3.939 16 C -0.152 4.152 17 C 0.035 3.965 18 N -0.346 5.346 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.251 4.251 22 N -0.593 5.593 23 Si 0.806 3.194 24 H -0.210 1.210 25 H -0.214 1.214 26 H -0.200 1.200 27 C -0.004 4.004 28 O -0.289 6.289 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.167 0.833 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.098 0.902 50 H -0.002 1.002 51 H 0.059 0.941 52 H 0.048 0.952 53 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 3.716 -10.176 -17.548 20.623 hybrid contribution -0.003 1.518 0.669 1.659 sum 3.713 -8.658 -16.879 19.330 Atomic orbital electron populations 1.21683 0.90137 1.04061 1.03181 1.22606 0.97084 0.94724 0.84812 0.94487 1.22340 0.79567 1.02559 0.98797 1.48156 1.07157 1.62093 1.16843 1.19073 0.88380 0.77115 0.81509 1.90716 1.77963 1.44529 1.33868 1.22840 0.91150 1.09080 1.02611 1.23906 0.95510 0.89545 0.96841 1.19846 0.89879 0.97240 0.97698 1.22043 1.02808 1.00965 0.95019 1.21851 1.00661 0.95255 1.01942 1.21815 1.02355 0.97997 0.97012 1.22530 1.00124 0.98603 0.80942 1.22265 0.81428 0.94115 0.96113 1.22869 1.02320 0.97935 0.92114 1.21710 0.95781 0.84191 0.94773 1.44772 1.72913 1.15979 1.00920 1.19328 1.33659 0.93564 0.90942 0.90982 1.25570 1.02132 1.01284 0.96140 1.70026 1.53828 1.32315 1.03108 0.85165 0.78455 0.78744 0.77031 1.21010 1.21430 1.19981 1.21814 0.96763 0.95445 0.86332 1.87846 1.20155 1.76924 1.43955 0.90115 0.92618 0.88911 0.88765 0.88513 0.83298 0.86784 0.93088 0.90758 0.91473 0.90407 0.91954 0.93540 0.92294 0.92079 0.90542 0.87435 0.87233 0.88795 0.88209 0.90240 1.00233 0.94103 0.95237 0.97742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.57 71.98 0.69 -2.44 16 2 C 0.07 1.99 3.17 30.69 0.10 2.09 16 3 H 0.04 1.34 6.22 -2.39 -0.01 1.32 16 4 C 0.09 2.38 5.92 86.34 0.51 2.89 16 5 N -0.61 -17.15 2.93 -821.91 -2.41 -19.56 16 6 C 0.55 16.47 7.65 86.57 0.66 17.14 16 7 O -0.59 -21.24 15.70 -4.08 -0.06 -21.31 16 8 C -0.24 -5.69 8.30 23.43 0.19 -5.50 16 9 C -0.04 -0.82 8.33 24.52 0.20 -0.61 16 10 C -0.05 -0.74 0.99 -52.93 -0.05 -0.79 16 11 C -0.15 -2.33 7.13 71.98 0.51 -1.82 16 12 C -0.14 -2.17 8.46 71.98 0.61 -1.56 16 13 C -0.13 -1.67 8.46 71.98 0.61 -1.06 16 14 C 0.10 2.60 5.10 86.20 0.44 3.04 16 15 C 0.10 3.50 0.81 -10.08 -0.01 3.50 16 16 C -0.11 -4.04 6.21 31.79 0.20 -3.84 16 17 C 0.16 7.97 5.89 86.88 0.51 8.48 16 18 N -0.62 -32.82 3.40 -692.48 -2.36 -35.18 16 19 C -0.25 -14.18 10.28 84.03 0.86 -13.32 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 21 C -0.06 -3.32 5.49 84.86 0.47 -2.86 16 22 N -0.94 -56.10 10.09 21.65 0.22 -55.88 16 23 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 27 C 0.12 5.33 6.34 86.48 0.55 5.88 16 28 O -0.37 -13.04 9.90 -148.97 -1.48 -14.51 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 2.58 7.06 -2.39 -0.02 2.57 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.15 3.10 3.69 -2.91 -0.01 3.08 16 35 H 0.11 2.69 7.50 -2.91 -0.02 2.66 16 36 H 0.05 0.93 7.50 -2.39 -0.02 0.92 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.94 7.50 -2.39 -0.02 0.93 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.11 2.57 5.29 -2.39 -0.01 2.55 16 47 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 48 H 0.10 3.07 8.01 -2.39 -0.02 3.06 16 49 H 0.08 4.40 5.88 -2.39 -0.01 4.39 16 50 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 51 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 52 H 0.03 1.26 7.63 -2.39 -0.02 1.24 16 53 H 0.00 0.23 6.00 -2.39 -0.01 0.21 16 Total: -1.00 -72.73 403.40 3.87 -68.86 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.88 Total: 20.35 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 7.05 Total: 9.22 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.55 Total: -110.61 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.54 Total: -35.82 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -72.73 3.87 -68.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131646365.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.077 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds