Wall clock time and date at job start Tue Mar 31 2020 21:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.55632 * 2 1 4 4 C 1.53274 * 109.51156 * 239.87711 * 2 1 3 5 5 N 1.47162 * 108.54414 * 187.18031 * 4 2 1 6 6 C 1.34773 * 121.06049 * 231.39197 * 5 4 2 7 7 O 1.21617 * 119.99520 * 174.72604 * 6 5 4 8 8 C 1.47098 * 120.00199 * 354.72233 * 6 5 4 9 9 C 1.32996 * 120.00142 * 186.71898 * 8 6 5 10 10 C 1.50704 * 119.99823 * 8.99009 * 9 8 6 11 11 C 1.53004 * 109.46929 * 48.59489 * 10 9 8 12 12 C 1.52997 * 109.46818 * 168.58990 * 10 9 8 13 13 C 1.52995 * 109.47469 * 288.59213 * 10 9 8 14 14 C 1.47303 * 117.87642 * 51.11923 * 5 4 2 15 15 C 1.52521 * 108.39625 * 310.60914 * 14 5 4 16 16 C 1.54520 * 110.05118 * 287.92244 * 15 14 5 17 17 C 1.55013 * 101.52436 * 206.90890 * 16 15 14 18 18 N 1.47485 * 104.90170 * 36.38069 * 17 16 15 19 19 C 1.36931 * 125.66907 * 155.95670 * 18 17 16 20 20 H 1.07991 * 120.00620 * 180.02562 * 19 18 17 21 21 C 1.38819 * 119.99582 * 0.02562 * 19 18 17 22 22 N 1.31618 * 119.99952 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99973 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47172 * 60.00268 * 23 21 19 25 25 H 1.48504 * 109.47343 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47258 * 300.00218 * 23 21 19 27 27 C 1.47193 * 108.67201 * 335.97631 * 18 17 16 28 28 O 1.42058 * 111.10567 * 50.43750 * 15 14 5 29 29 H 1.08998 * 109.47344 * 299.87830 * 1 2 3 30 30 H 1.09006 * 109.47252 * 59.87333 * 1 2 3 31 31 H 1.09002 * 109.47545 * 179.87639 * 1 2 3 32 32 H 1.09001 * 109.62243 * 67.47068 * 4 2 1 33 33 H 1.08997 * 109.62727 * 306.90351 * 4 2 1 34 34 H 1.07997 * 119.99859 * 6.72380 * 8 6 5 35 35 H 1.07995 * 120.00042 * 188.99649 * 9 8 6 36 36 H 1.08994 * 109.47086 * 95.08009 * 11 10 9 37 37 H 1.08996 * 109.46779 * 215.08716 * 11 10 9 38 38 H 1.08999 * 109.46869 * 335.08155 * 11 10 9 39 39 H 1.08995 * 109.47155 * 60.00365 * 12 10 9 40 40 H 1.09009 * 109.47203 * 179.97438 * 12 10 9 41 41 H 1.09001 * 109.47262 * 300.00333 * 12 10 9 42 42 H 1.09000 * 109.46902 * 29.05624 * 13 10 9 43 43 H 1.08994 * 109.47385 * 149.05956 * 13 10 9 44 44 H 1.09002 * 109.47352 * 269.05984 * 13 10 9 45 45 H 1.09004 * 109.68316 * 70.33125 * 14 5 4 46 46 H 1.09003 * 109.68195 * 190.88583 * 14 5 4 47 47 H 1.08997 * 111.01866 * 324.97366 * 16 15 14 48 48 H 1.09007 * 111.01218 * 88.84808 * 16 15 14 49 49 H 1.09000 * 110.35651 * 155.23172 * 17 16 15 50 50 H 1.09000 * 110.35318 * 277.41844 * 17 16 15 51 51 H 0.96996 * 120.00011 * 179.97438 * 22 21 19 52 52 H 1.08993 * 109.91174 * 242.14061 * 27 18 17 53 53 H 1.09005 * 109.90519 * 120.87116 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0419 -0.7250 -1.2496 5 7 3.5030 -0.8652 -1.1438 6 6 4.3135 -0.4748 -2.1472 7 8 5.5205 -0.5099 -2.0025 8 6 3.7383 -0.0063 -3.4175 9 6 4.5328 0.2517 -4.4523 10 6 5.9909 -0.1250 -4.3950 11 6 6.1253 -1.5728 -3.9185 12 6 6.6083 0.0127 -5.7880 13 6 6.7194 0.8024 -3.4203 14 6 4.0516 -1.4403 0.0964 15 6 3.4233 -0.7155 1.2822 16 6 3.9925 0.7170 1.3897 17 6 3.8337 1.0005 2.9054 18 7 4.1105 -0.2900 3.5636 19 6 4.5415 -0.4523 4.8532 20 1 4.7166 -1.4439 5.2433 21 6 4.7532 0.6580 5.6591 22 7 4.5392 1.8666 5.1839 23 14 5.3403 0.4366 7.4185 24 1 6.6507 -0.2620 7.4188 25 1 5.4878 1.7667 8.0622 26 1 4.3487 -0.3709 8.1734 27 6 3.8471 -1.3745 2.6040 28 8 2.0079 -0.6770 1.1666 29 1 -0.3634 0.5119 0.8910 30 1 -0.3634 0.5158 -0.8889 31 1 -0.3634 -1.0277 -0.0022 32 1 1.7933 -0.1439 -2.1376 33 1 1.5831 -1.7116 -1.3142 34 1 2.6707 0.1282 -3.5097 35 1 4.1332 0.7312 -5.3336 36 1 6.2023 -2.2337 -4.7818 37 1 7.0202 -1.6714 -3.3042 38 1 5.2489 -1.8443 -3.3300 39 1 6.5126 1.0440 -6.1275 40 1 7.6631 -0.2593 -5.7466 41 1 6.0893 -0.6480 -6.4825 42 1 6.0252 1.1366 -2.6492 43 1 7.5463 0.2648 -2.9564 44 1 7.1055 1.6666 -3.9608 45 1 3.8114 -2.5024 0.1463 46 1 5.1333 -1.3067 0.1159 47 1 5.0415 0.7440 1.0948 48 1 3.4035 1.4172 0.7972 49 1 4.5537 1.7526 3.2280 50 1 2.8181 1.3298 3.1251 51 1 4.6867 2.6423 5.7471 52 1 3.0445 -2.0117 2.9751 53 1 4.7518 -1.9633 2.4518 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131646366.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:57 Heat of formation + Delta-G solvation = -13.944458 kcal Electronic energy + Delta-G solvation = -31689.087620 eV Core-core repulsion = 27755.976736 eV Total energy + Delta-G solvation = -3933.110884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.03120 -40.75899 -38.20887 -37.53319 -35.66328 -34.79921 -33.00729 -32.57383 -31.04731 -30.01340 -28.14938 -28.09707 -27.73693 -27.14857 -25.79408 -23.60931 -23.21383 -21.98385 -21.23508 -20.37479 -19.01931 -19.00311 -18.22468 -17.83615 -16.92044 -16.89233 -16.53067 -16.02226 -15.95476 -15.61076 -15.26872 -15.09303 -14.93680 -14.84192 -14.50445 -14.35130 -14.13065 -13.85143 -13.61400 -13.56176 -13.14075 -13.07061 -12.98211 -12.80370 -12.76180 -12.72736 -12.65641 -12.27976 -12.24454 -12.05607 -12.01108 -11.89056 -11.79188 -11.72755 -11.53468 -11.47112 -11.37322 -10.81482 -10.73746 -10.35674 -10.22094 -9.33255 -8.94956 -7.79908 -5.25414 0.47401 1.44733 1.49159 1.55300 1.94152 2.34115 2.45644 2.62597 3.30270 3.44751 3.59211 3.62006 3.75973 3.82192 3.89825 3.96099 4.02698 4.12558 4.19618 4.22687 4.38862 4.42524 4.49225 4.51236 4.63023 4.64504 4.71185 4.77384 4.77804 4.80393 4.85895 4.87203 4.94075 4.95488 4.97709 5.07112 5.12049 5.21697 5.24190 5.27489 5.31720 5.36582 5.40115 5.44021 5.52447 5.53029 5.55576 5.71662 5.76233 6.23734 6.35510 6.48112 7.05929 7.26096 7.72235 8.37366 9.22511 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.003242 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.160191 B = 8633.856861 C = 9755.961090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 H 0.052 0.948 4 C 0.083 3.917 5 N -0.612 5.612 6 C 0.527 3.473 7 O -0.545 6.545 8 C -0.233 4.233 9 C -0.038 4.038 10 C -0.046 4.046 11 C -0.114 4.114 12 C -0.137 4.137 13 C -0.109 4.109 14 C 0.112 3.888 15 C 0.113 3.887 16 C -0.144 4.144 17 C 0.168 3.832 18 N -0.623 5.623 19 C -0.242 4.242 20 H 0.084 0.916 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.986 3.014 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.277 1.277 27 C 0.147 3.853 28 O -0.376 6.376 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.070 0.930 50 H -0.017 1.017 51 H 0.247 0.753 52 H 0.032 0.968 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 -4.197 -25.541 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 H 0.070 0.930 4 C -0.039 4.039 5 N -0.345 5.345 6 C 0.321 3.679 7 O -0.425 6.425 8 C -0.253 4.253 9 C -0.058 4.058 10 C -0.046 4.046 11 C -0.171 4.171 12 C -0.194 4.194 13 C -0.166 4.166 14 C -0.012 4.012 15 C 0.072 3.928 16 C -0.183 4.183 17 C 0.043 3.957 18 N -0.349 5.349 19 C -0.371 4.371 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.022 3.978 28 O -0.296 6.296 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.001 0.999 51 H 0.057 0.943 52 H 0.050 0.950 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.291 -4.206 -25.153 26.046 hybrid contribution 0.506 0.260 1.606 1.704 sum -4.785 -3.945 -23.547 24.350 Atomic orbital electron populations 1.21721 0.90175 1.03762 1.03578 1.22823 0.97008 0.95355 0.84878 0.92979 1.22700 0.78700 1.02962 0.99497 1.48183 1.07763 1.62532 1.16064 1.19122 0.86184 0.77439 0.85186 1.90944 1.15110 1.53749 1.82729 1.22758 1.01966 1.08270 0.92308 1.24167 0.93945 0.90073 0.97588 1.19734 0.92903 0.95787 0.96205 1.22084 1.01647 0.94391 0.98972 1.21969 1.00633 1.02512 0.94267 1.21859 0.99191 0.97638 0.97883 1.21797 0.99403 0.97333 0.82696 1.21926 0.81688 0.94862 0.94306 1.23225 1.00052 0.97095 0.97879 1.21558 0.96832 0.89287 0.88002 1.44787 1.78233 1.01964 1.09954 1.19459 1.36688 0.93515 0.87402 0.89799 1.25706 1.02511 0.94949 1.02901 1.70064 1.56138 0.97585 1.36272 0.85048 0.78390 0.76378 0.78878 1.20061 1.21854 1.20305 1.21227 0.97516 0.91227 0.87872 1.87871 1.19588 1.77367 1.44786 0.93151 0.87505 0.90956 0.85389 0.89135 0.82231 0.82173 0.93640 0.94441 0.93325 0.91470 0.92954 0.91355 0.93183 0.94537 0.93893 0.89905 0.89728 0.92281 0.90751 0.91189 0.99946 0.94302 0.95007 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.57 71.98 0.69 -1.77 16 2 C 0.06 1.41 3.18 30.68 0.10 1.50 16 3 H 0.05 1.42 6.13 -2.39 -0.01 1.41 16 4 C 0.08 1.53 5.79 86.34 0.50 2.03 16 5 N -0.61 -15.32 2.91 -822.73 -2.40 -17.72 16 6 C 0.53 13.18 5.66 86.57 0.49 13.67 16 7 O -0.54 -16.85 8.11 -4.08 -0.03 -16.88 16 8 C -0.23 -3.85 8.80 23.43 0.21 -3.64 16 9 C -0.04 -0.57 8.52 24.52 0.21 -0.36 16 10 C -0.05 -0.88 0.75 -52.93 -0.04 -0.92 16 11 C -0.11 -2.58 7.58 71.98 0.55 -2.03 16 12 C -0.14 -1.88 8.04 71.98 0.58 -1.30 16 13 C -0.11 -2.66 7.54 71.98 0.54 -2.12 16 14 C 0.11 3.46 5.18 86.07 0.45 3.90 16 15 C 0.11 4.22 0.83 -10.21 -0.01 4.21 16 16 C -0.14 -6.04 5.91 31.80 0.19 -5.85 16 17 C 0.17 9.03 5.89 86.88 0.51 9.54 16 18 N -0.62 -34.36 3.40 -692.50 -2.36 -36.71 16 19 C -0.24 -14.22 10.28 84.04 0.86 -13.35 16 20 H 0.08 4.67 7.83 -2.92 -0.02 4.65 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 22 N -0.95 -59.06 10.09 21.65 0.22 -58.84 16 23 Si 0.99 47.14 29.55 68.60 2.03 49.17 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 C 0.15 6.56 6.61 86.47 0.57 7.14 16 28 O -0.38 -13.23 9.87 -148.97 -1.47 -14.70 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.13 1.40 5.48 -2.39 -0.01 1.39 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.16 1.52 5.97 -2.91 -0.02 1.51 16 35 H 0.16 1.22 8.00 -2.91 -0.02 1.20 16 36 H 0.04 0.86 7.75 -2.39 -0.02 0.85 16 37 H 0.04 1.01 6.99 -2.39 -0.02 0.99 16 38 H 0.05 1.21 4.62 -2.39 -0.01 1.20 16 39 H 0.07 0.76 8.11 -2.39 -0.02 0.74 16 40 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 42 H 0.05 1.45 5.50 -2.39 -0.01 1.44 16 43 H 0.04 1.02 7.18 -2.39 -0.02 1.01 16 44 H 0.04 0.90 7.80 -2.39 -0.02 0.88 16 45 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 46 H 0.08 2.95 6.87 -2.39 -0.02 2.94 16 47 H 0.06 2.58 7.86 -2.39 -0.02 2.56 16 48 H 0.07 2.86 5.98 -2.38 -0.01 2.85 16 49 H 0.07 4.24 5.88 -2.39 -0.01 4.23 16 50 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 51 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 52 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 53 H 0.05 2.03 7.79 -2.38 -0.02 2.01 16 Total: -1.00 -74.61 388.11 3.73 -70.87 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.89 Total: 17.72 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.86 Total: 7.09 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -4.53 Total: -113.27 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.50 Total: -31.58 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -74.61 3.73 -70.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131646366.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.930 kcal (2) G-P(sol) polarization free energy of solvation -74.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds