Wall clock time and date at job start Tue Mar 31 2020 21:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99664 * 2 1 4 4 C 1.52995 * 109.47380 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46826 * 239.99587 * 3 2 1 6 6 C 1.52995 * 109.47235 * 119.99918 * 3 2 1 7 7 C 1.50701 * 109.47266 * 179.97438 * 6 3 2 8 8 O 1.21281 * 120.00062 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99843 * 179.97438 * 7 6 3 10 10 C 1.47159 * 121.07839 * 0.02562 * 9 7 6 11 11 C 1.53283 * 108.53699 * 231.28120 * 10 9 7 12 12 H 1.09001 * 109.55045 * 66.88866 * 11 10 9 13 13 C 1.52997 * 109.51470 * 187.01351 * 11 10 9 14 14 O 1.43119 * 109.22036 * 306.94047 * 11 10 9 15 15 C 1.41880 * 114.42437 * 60.87534 * 14 11 10 16 16 C 1.54363 * 110.74727 * 63.52682 * 15 14 11 17 17 C 1.54457 * 102.87666 * 83.65437 * 16 15 14 18 18 N 1.47075 * 107.29916 * 21.49661 * 17 16 15 19 19 C 1.36935 * 125.63452 * 180.97525 * 18 17 16 20 20 H 1.08001 * 120.00601 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99956 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46858 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47592 * 119.99902 * 23 21 19 26 26 H 1.48503 * 109.47138 * 240.00274 * 23 21 19 27 27 C 1.47571 * 108.73934 * 0.99453 * 18 17 16 28 28 C 1.47324 * 121.06993 * 180.02562 * 9 7 6 29 29 H 1.07994 * 119.99828 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99634 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00245 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47039 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47099 * 300.00085 * 4 3 2 34 34 H 1.08993 * 109.47285 * 60.00126 * 4 3 2 35 35 H 1.09000 * 109.47314 * 300.00329 * 5 3 2 36 36 H 1.09003 * 109.47230 * 60.00173 * 5 3 2 37 37 H 1.08999 * 109.47531 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47692 * 59.99763 * 6 3 2 39 39 H 1.09002 * 109.47520 * 299.99776 * 6 3 2 40 40 H 1.09002 * 109.62850 * 111.56791 * 10 9 7 41 41 H 1.09006 * 109.62725 * 350.99735 * 10 9 7 42 42 H 1.09002 * 109.47153 * 179.74574 * 13 11 10 43 43 H 1.09001 * 109.46832 * 59.74765 * 13 11 10 44 44 H 1.09004 * 109.47261 * 299.74746 * 13 11 10 45 45 H 1.08999 * 110.73087 * 202.00766 * 16 15 14 46 46 H 1.09000 * 110.73151 * 325.30529 * 16 15 14 47 47 H 1.09002 * 109.88022 * 262.06408 * 17 16 15 48 48 H 1.09006 * 110.00033 * 140.99203 * 17 16 15 49 49 H 0.97000 * 120.00358 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.37784 * 217.85365 * 27 18 17 51 51 H 1.09001 * 110.37789 * 95.50429 * 27 18 17 52 52 H 1.09002 * 109.64302 * 11.17669 * 28 9 7 53 53 H 1.09006 * 109.80917 * 250.65812 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6912 1.2489 8 8 3.5453 3.4789 0.3393 9 7 4.5390 2.9832 2.2600 10 6 4.7406 2.0450 3.3757 11 6 4.5447 2.8047 4.6926 12 1 3.5025 3.1098 4.7862 13 6 4.9190 1.8976 5.8664 14 8 5.3844 3.9637 4.6973 15 6 5.1128 4.8891 3.6568 16 6 3.6917 5.4739 3.8022 17 6 3.8938 6.6215 4.8161 18 7 5.3183 6.9861 4.7857 19 6 5.9113 7.9512 5.5551 20 1 6.9694 8.1449 5.4578 21 6 5.1526 8.6807 6.4601 22 7 3.8633 8.4444 6.5791 23 14 5.9614 9.9978 7.5092 24 1 7.4096 10.0668 7.1875 25 1 5.3285 11.3117 7.2291 26 1 5.7893 9.6616 8.9454 27 6 6.0030 6.1404 3.7889 28 6 5.2874 4.2520 2.2838 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.6143 3.4120 -0.0011 33 1 0.4429 2.4101 -0.8909 34 1 0.4423 2.4105 0.8891 35 1 3.6515 0.5577 -1.2492 36 1 2.3165 1.3283 -2.1393 37 1 3.4885 2.3299 -1.2491 38 1 3.6515 0.5578 1.2493 39 1 2.3165 1.3286 2.1392 40 1 5.7511 1.6386 3.3344 41 1 4.0142 1.2350 3.3088 42 1 4.7838 2.4400 6.8022 43 1 5.9608 1.5914 5.7712 44 1 4.2791 1.0152 5.8622 45 1 3.3340 5.8605 2.8479 46 1 3.0052 4.7256 4.1982 47 1 3.6183 6.2856 5.8158 48 1 3.2852 7.4804 4.5331 49 1 3.3330 8.9543 7.2113 50 1 6.9959 5.8641 4.1434 51 1 6.0713 6.6600 2.8331 52 1 4.8979 4.9216 1.5170 53 1 6.3448 4.0607 2.1005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131661003.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:02 Heat of formation + Delta-G solvation = -22.665487 kcal Electronic energy + Delta-G solvation = -31477.172086 eV Core-core repulsion = 27543.683030 eV Total energy + Delta-G solvation = -3933.489056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.82573 -39.37653 -37.19160 -36.34844 -34.62325 -33.11600 -31.53563 -31.30699 -29.62186 -28.86959 -27.82710 -27.36075 -26.50460 -25.32604 -23.71250 -22.45357 -21.89634 -20.20225 -19.68748 -18.88522 -18.31298 -17.33647 -17.01329 -16.52992 -15.87151 -15.68545 -15.52485 -14.74783 -14.64451 -14.49470 -14.19800 -14.06985 -13.85895 -13.55360 -13.41127 -13.04176 -12.84697 -12.54346 -12.29389 -12.19111 -12.13435 -11.97162 -11.87391 -11.84694 -11.59590 -11.39856 -11.23173 -11.03674 -10.98569 -10.89206 -10.86581 -10.79356 -10.28964 -10.21556 -10.06727 -9.98784 -9.68313 -9.61155 -9.49086 -9.43099 -8.55469 -8.34797 -6.79029 -5.66617 -2.99669 2.04399 2.57392 2.87541 3.43000 3.48206 3.50825 3.85899 4.30303 4.51818 4.54203 4.67529 4.71311 4.80210 4.87409 5.03523 5.05210 5.13109 5.14690 5.21230 5.33031 5.35102 5.45090 5.47670 5.53396 5.59129 5.59372 5.60231 5.68823 5.78754 5.82094 5.86437 5.89507 5.93157 5.98917 6.00127 6.14884 6.18218 6.26465 6.34416 6.37552 6.47966 6.50594 6.53268 6.55951 6.59563 6.66356 7.35219 7.58950 7.65929 7.69426 7.87142 8.15232 8.29119 9.25823 9.85837 10.51504 11.45307 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.002889 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.215910 B = 9689.438679 C =10054.919961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.127 4.127 7 C 0.518 3.482 8 O -0.530 6.530 9 N -0.611 5.611 10 C 0.078 3.922 11 C 0.068 3.932 12 H 0.065 0.935 13 C -0.141 4.141 14 O -0.344 6.344 15 C 0.093 3.907 16 C -0.164 4.164 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.153 3.847 28 C 0.097 3.903 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.251 0.749 50 H 0.050 0.950 51 H 0.037 0.963 52 H 0.102 0.898 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.089 -20.253 -10.690 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.164 4.164 3 C -0.020 4.020 4 C -0.213 4.213 5 C -0.206 4.206 6 C -0.167 4.167 7 C 0.307 3.693 8 O -0.408 6.408 9 N -0.345 5.345 10 C -0.045 4.045 11 C 0.009 3.991 12 H 0.083 0.917 13 C -0.199 4.199 14 O -0.262 6.262 15 C 0.052 3.948 16 C -0.202 4.202 17 C 0.061 3.939 18 N -0.326 5.326 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.026 3.974 28 C -0.025 4.025 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.069 0.931 51 H 0.054 0.946 52 H 0.120 0.880 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.082 -19.635 -10.877 22.657 hybrid contribution 0.075 0.386 0.575 0.697 sum -3.007 -19.248 -10.302 22.038 Atomic orbital electron populations 1.24033 0.96195 1.02104 1.00921 1.22940 0.95935 0.97524 0.99964 1.19376 0.94943 0.93311 0.94364 1.22188 0.98551 0.99705 1.00901 1.22051 0.99180 1.03525 0.95812 1.21731 0.99132 0.95731 1.00126 1.20581 0.78862 0.88565 0.81256 1.90573 1.64318 1.50678 1.35242 1.48238 1.44014 1.19744 1.22488 1.22533 1.02720 0.92442 0.86841 1.22440 0.95830 0.87058 0.93722 0.91724 1.21693 1.02176 0.98210 0.97819 1.87918 1.57498 1.30260 1.50568 1.22396 0.97525 0.89600 0.85307 1.23342 0.95470 1.00126 1.01308 1.21095 0.85389 0.92207 0.95226 1.44427 1.04340 1.40503 1.43287 1.19092 0.93016 1.09245 1.13771 0.90341 1.24793 0.95855 1.00082 0.99819 1.69979 1.04861 1.43157 1.39002 0.86036 0.78284 0.81309 0.80087 1.20508 1.21834 1.21834 1.21338 0.94974 0.87356 0.93761 1.22130 0.96182 0.85342 0.98891 0.87734 0.88775 0.87599 0.89371 0.92815 0.93172 0.93535 0.93010 0.89395 0.89012 0.88916 0.90515 0.89241 0.91037 0.91762 0.91320 0.91695 0.92131 0.93577 0.93969 0.93907 0.93142 0.94601 0.88006 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 13.70 29.01 0.40 -1.15 16 2 C -0.15 -1.20 8.76 -36.03 -0.32 -1.51 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.30 16 4 C -0.16 -1.70 6.83 37.16 0.25 -1.45 16 5 C -0.15 -1.52 8.16 37.16 0.30 -1.21 16 6 C -0.13 -1.19 3.13 -27.88 -0.09 -1.28 16 7 C 0.52 6.57 7.13 -10.98 -0.08 6.49 16 8 O -0.53 -8.15 10.83 5.56 0.06 -8.09 16 9 N -0.61 -7.85 2.95 -172.69 -0.51 -8.36 16 10 C 0.08 0.82 5.81 -3.54 -0.02 0.80 16 11 C 0.07 0.90 3.20 -26.59 -0.09 0.82 16 12 H 0.06 0.92 6.24 -51.93 -0.32 0.59 16 13 C -0.14 -1.52 9.57 37.16 0.36 -1.17 16 14 O -0.34 -6.16 9.92 -35.22 -0.35 -6.51 16 15 C 0.09 1.67 0.84 -89.64 -0.08 1.60 16 16 C -0.16 -3.21 5.88 -25.25 -0.15 -3.36 16 17 C 0.19 4.64 5.39 -2.96 -0.02 4.63 16 18 N -0.60 -15.63 3.40 -170.32 -0.58 -16.21 16 19 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -27.54 10.31 55.49 0.57 -26.97 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.15 3.21 6.42 -2.87 -0.02 3.19 16 28 C 0.10 1.46 5.30 -3.92 -0.02 1.44 16 29 H 0.10 0.85 5.69 -52.49 -0.30 0.55 16 30 H 0.09 0.62 8.06 -52.49 -0.42 0.19 16 31 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.09 1.19 5.51 -51.93 -0.29 0.90 16 33 H 0.05 0.54 7.50 -51.93 -0.39 0.15 16 34 H 0.05 0.52 7.50 -51.93 -0.39 0.13 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 1.10 5.51 -51.93 -0.29 0.81 16 38 H 0.09 0.69 8.01 -51.93 -0.42 0.27 16 39 H 0.09 0.79 7.67 -51.93 -0.40 0.39 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.69 6.05 -51.93 -0.31 0.37 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.25 7.82 -51.93 -0.41 0.84 16 46 H 0.06 1.12 6.09 -51.93 -0.32 0.80 16 47 H 0.05 1.29 7.38 -51.93 -0.38 0.91 16 48 H 0.04 1.17 7.49 -51.93 -0.39 0.78 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.04 0.73 7.99 -51.93 -0.42 0.31 16 52 H 0.10 1.64 6.85 -51.93 -0.36 1.28 16 53 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -32.31 395.60 -8.93 -41.24 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -9.14 Total: 0.80 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.08 Total: 0.70 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.52 Total: -51.53 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.29 Total: -14.59 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.31 -8.93 -41.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661003.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.578 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds