Wall clock time and date at job start Tue Mar 31 2020 21:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99664 * 2 1 4 4 C 1.52995 * 109.47380 * 359.97438 * 3 2 1 5 5 C 1.53002 * 109.46826 * 239.99587 * 3 2 1 6 6 C 1.52995 * 109.47235 * 119.99918 * 3 2 1 7 7 C 1.50701 * 109.47266 * 179.97438 * 6 3 2 8 8 O 1.21281 * 120.00062 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99843 * 179.97438 * 7 6 3 10 10 C 1.47159 * 121.07839 * 0.02562 * 9 7 6 11 11 C 1.53283 * 108.53699 * 231.28120 * 10 9 7 12 12 H 1.09001 * 109.55045 * 66.88866 * 11 10 9 13 13 C 1.52997 * 109.51470 * 187.01351 * 11 10 9 14 14 O 1.43119 * 109.22036 * 306.94047 * 11 10 9 15 15 C 1.41880 * 114.42437 * 60.87534 * 14 11 10 16 16 C 1.54363 * 110.74727 * 63.52682 * 15 14 11 17 17 C 1.54457 * 102.87666 * 83.65437 * 16 15 14 18 18 N 1.47075 * 107.29916 * 21.49661 * 17 16 15 19 19 C 1.36935 * 125.63452 * 180.97525 * 18 17 16 20 20 H 1.08001 * 120.00601 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99956 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46858 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47592 * 119.99902 * 23 21 19 26 26 H 1.48503 * 109.47138 * 240.00274 * 23 21 19 27 27 C 1.47571 * 108.73934 * 0.99453 * 18 17 16 28 28 C 1.47324 * 121.06993 * 180.02562 * 9 7 6 29 29 H 1.07994 * 119.99828 * 0.02562 * 1 2 3 30 30 H 1.08001 * 119.99634 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00245 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47039 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47099 * 300.00085 * 4 3 2 34 34 H 1.08993 * 109.47285 * 60.00126 * 4 3 2 35 35 H 1.09000 * 109.47314 * 300.00329 * 5 3 2 36 36 H 1.09003 * 109.47230 * 60.00173 * 5 3 2 37 37 H 1.08999 * 109.47531 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47692 * 59.99763 * 6 3 2 39 39 H 1.09002 * 109.47520 * 299.99776 * 6 3 2 40 40 H 1.09002 * 109.62850 * 111.56791 * 10 9 7 41 41 H 1.09006 * 109.62725 * 350.99735 * 10 9 7 42 42 H 1.09002 * 109.47153 * 179.74574 * 13 11 10 43 43 H 1.09001 * 109.46832 * 59.74765 * 13 11 10 44 44 H 1.09004 * 109.47261 * 299.74746 * 13 11 10 45 45 H 1.08999 * 110.73087 * 202.00766 * 16 15 14 46 46 H 1.09000 * 110.73151 * 325.30529 * 16 15 14 47 47 H 1.09002 * 109.88022 * 262.06408 * 17 16 15 48 48 H 1.09006 * 110.00033 * 140.99203 * 17 16 15 49 49 H 0.97000 * 120.00358 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.37784 * 217.85365 * 27 18 17 51 51 H 1.09001 * 110.37789 * 95.50429 * 27 18 17 52 52 H 1.09002 * 109.64302 * 11.17669 * 28 9 7 53 53 H 1.09006 * 109.80917 * 250.65812 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6912 1.2489 8 8 3.5453 3.4789 0.3393 9 7 4.5390 2.9832 2.2600 10 6 4.7406 2.0450 3.3757 11 6 4.5447 2.8047 4.6926 12 1 3.5025 3.1098 4.7862 13 6 4.9190 1.8976 5.8664 14 8 5.3844 3.9637 4.6973 15 6 5.1128 4.8891 3.6568 16 6 3.6917 5.4739 3.8022 17 6 3.8938 6.6215 4.8161 18 7 5.3183 6.9861 4.7857 19 6 5.9113 7.9512 5.5551 20 1 6.9694 8.1449 5.4578 21 6 5.1526 8.6807 6.4601 22 7 3.8633 8.4444 6.5791 23 14 5.9614 9.9978 7.5092 24 1 7.4096 10.0668 7.1875 25 1 5.3285 11.3117 7.2291 26 1 5.7893 9.6616 8.9454 27 6 6.0030 6.1404 3.7889 28 6 5.2874 4.2520 2.2838 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.6143 3.4120 -0.0011 33 1 0.4429 2.4101 -0.8909 34 1 0.4423 2.4105 0.8891 35 1 3.6515 0.5577 -1.2492 36 1 2.3165 1.3283 -2.1393 37 1 3.4885 2.3299 -1.2491 38 1 3.6515 0.5578 1.2493 39 1 2.3165 1.3286 2.1392 40 1 5.7511 1.6386 3.3344 41 1 4.0142 1.2350 3.3088 42 1 4.7838 2.4400 6.8022 43 1 5.9608 1.5914 5.7712 44 1 4.2791 1.0152 5.8622 45 1 3.3340 5.8605 2.8479 46 1 3.0052 4.7256 4.1982 47 1 3.6183 6.2856 5.8158 48 1 3.2852 7.4804 4.5331 49 1 3.3330 8.9543 7.2113 50 1 6.9959 5.8641 4.1434 51 1 6.0713 6.6600 2.8331 52 1 4.8979 4.9216 1.5170 53 1 6.3448 4.0607 2.1005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131661003.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:01 Heat of formation + Delta-G solvation = -42.121255 kcal Electronic energy + Delta-G solvation = -31478.015751 eV Core-core repulsion = 27543.683030 eV Total energy + Delta-G solvation = -3934.332722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.92561 -40.53389 -38.20969 -37.76484 -35.75786 -34.78535 -32.95560 -32.17374 -31.15405 -30.35260 -28.99256 -28.17480 -27.58450 -26.86823 -25.33023 -23.26087 -23.11503 -22.04531 -20.91162 -20.00730 -19.03660 -18.96305 -18.23188 -17.86235 -16.90677 -16.82341 -16.60223 -16.35942 -15.94095 -15.60877 -15.54486 -15.18117 -15.06164 -14.88197 -14.54875 -14.19742 -14.04629 -13.79219 -13.62751 -13.53168 -13.15110 -13.05686 -12.99130 -12.90066 -12.82061 -12.75304 -12.64178 -12.30990 -12.22497 -12.05539 -11.98413 -11.96881 -11.86995 -11.78194 -11.69726 -11.50021 -11.37124 -10.85655 -10.72233 -10.42527 -10.20213 -9.46443 -8.92321 -7.85537 -5.21356 1.44160 1.44946 1.46471 1.56882 1.64118 1.91511 2.48387 2.63784 3.32962 3.42207 3.53379 3.60396 3.81662 3.85392 3.89444 3.94667 4.01228 4.05918 4.14340 4.24319 4.38656 4.39159 4.47257 4.48704 4.51719 4.63307 4.65659 4.73705 4.75581 4.76278 4.78633 4.85477 4.86111 4.95173 5.00083 5.04852 5.08535 5.12226 5.14497 5.20381 5.31201 5.36341 5.42244 5.49322 5.56814 5.59942 5.69408 5.81093 6.00129 6.16185 6.39833 6.42793 7.07794 7.20510 7.74278 8.39287 9.25513 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019423 B = 0.002889 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.215910 B = 9689.438679 C =10054.919961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.019 4.019 4 C -0.154 4.154 5 C -0.145 4.145 6 C -0.122 4.122 7 C 0.513 3.487 8 O -0.562 6.562 9 N -0.614 5.614 10 C 0.083 3.917 11 C 0.058 3.942 12 H 0.051 0.949 13 C -0.136 4.136 14 O -0.372 6.372 15 C 0.110 3.890 16 C -0.147 4.147 17 C 0.198 3.802 18 N -0.621 5.621 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.981 3.019 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.145 3.855 28 C 0.108 3.892 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.045 0.955 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.007 0.993 48 H 0.003 0.997 49 H 0.246 0.754 50 H 0.052 0.948 51 H 0.047 0.953 52 H 0.088 0.912 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -23.621 -11.230 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C -0.020 4.020 4 C -0.211 4.211 5 C -0.203 4.203 6 C -0.161 4.161 7 C 0.304 3.696 8 O -0.441 6.441 9 N -0.347 5.347 10 C -0.039 4.039 11 C 0.000 4.000 12 H 0.069 0.931 13 C -0.193 4.193 14 O -0.292 6.292 15 C 0.069 3.931 16 C -0.185 4.185 17 C 0.073 3.927 18 N -0.347 5.347 19 C -0.367 4.367 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.019 3.981 28 C -0.016 4.016 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.144 0.856 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.146 0.854 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.025 0.975 48 H 0.021 0.979 49 H 0.055 0.945 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.106 0.894 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.363 -23.043 -11.436 25.833 hybrid contribution -0.173 1.432 0.722 1.613 sum -2.537 -21.611 -10.713 24.254 Atomic orbital electron populations 1.24154 0.96347 1.02515 1.00445 1.22932 0.95909 0.97201 1.00330 1.19361 0.94675 0.93595 0.94361 1.22136 0.98717 0.99126 1.01155 1.21984 0.99354 1.02685 0.96232 1.21800 0.99438 0.94407 1.00479 1.21263 0.78376 0.89453 0.80517 1.90588 1.65062 1.51977 1.36518 1.48323 1.43863 1.19146 1.23391 1.22680 1.05037 0.92159 0.83999 1.22783 0.94425 0.86159 0.96649 0.93098 1.21716 1.03605 0.98591 0.95389 1.87875 1.58718 1.31778 1.50799 1.22061 0.94629 0.89084 0.87339 1.23132 0.97468 0.98388 0.99544 1.20750 0.84812 0.92507 0.94623 1.44717 1.05081 1.40932 1.43996 1.19511 0.93499 1.09736 1.13926 0.89731 1.25694 0.96491 1.02587 1.01434 1.70214 1.06245 1.44191 1.39634 0.84961 0.78096 0.78122 0.77857 1.18771 1.21928 1.21925 1.21545 0.95362 0.88371 0.92798 1.21805 0.97378 0.86439 0.95974 0.88602 0.87230 0.85583 0.92285 0.92678 0.92852 0.91949 0.93135 0.92015 0.85931 0.87346 0.88800 0.85365 0.93546 0.90952 0.87490 0.91488 0.90895 0.97455 0.97862 0.94522 0.92980 0.93523 0.89356 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 13.70 67.77 0.93 -1.63 16 2 C -0.15 -1.87 8.76 25.64 0.22 -1.65 16 3 C -0.02 -0.33 0.74 -52.93 -0.04 -0.37 16 4 C -0.15 -3.24 6.83 71.98 0.49 -2.75 16 5 C -0.15 -2.70 8.16 71.98 0.59 -2.12 16 6 C -0.12 -1.82 3.13 29.85 0.09 -1.73 16 7 C 0.51 11.90 7.13 87.66 0.62 12.52 16 8 O -0.56 -17.02 10.83 -3.03 -0.03 -17.05 16 9 N -0.61 -14.23 2.95 -818.67 -2.42 -16.65 16 10 C 0.08 1.42 5.81 86.35 0.50 1.93 16 11 C 0.06 1.41 3.20 30.69 0.10 1.51 16 12 H 0.05 1.38 6.24 -2.39 -0.01 1.36 16 13 C -0.14 -2.57 9.57 71.98 0.69 -1.88 16 14 O -0.37 -13.09 9.92 -148.95 -1.48 -14.56 16 15 C 0.11 3.95 0.84 -10.16 -0.01 3.94 16 16 C -0.15 -5.91 5.88 31.55 0.19 -5.72 16 17 C 0.20 10.49 5.39 86.76 0.47 10.96 16 18 N -0.62 -33.57 3.40 -692.76 -2.36 -35.93 16 19 C -0.24 -13.85 10.28 84.03 0.86 -12.98 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.64 16 22 N -0.95 -59.60 10.31 21.65 0.22 -59.38 16 23 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 C 0.14 6.18 6.42 86.56 0.56 6.74 16 28 C 0.11 3.11 5.30 86.01 0.46 3.56 16 29 H 0.10 1.39 5.69 -2.91 -0.02 1.37 16 30 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.13 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.06 1.61 5.51 -2.39 -0.01 1.60 16 33 H 0.05 1.09 7.50 -2.39 -0.02 1.07 16 34 H 0.05 1.04 7.50 -2.39 -0.02 1.03 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.51 5.51 -2.39 -0.01 1.49 16 38 H 0.12 1.14 8.01 -2.39 -0.02 1.12 16 39 H 0.11 1.34 7.67 -2.39 -0.02 1.32 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.13 1.23 6.05 -2.38 -0.01 1.21 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.07 2.65 7.82 -2.39 -0.02 2.63 16 46 H 0.07 2.73 6.09 -2.39 -0.01 2.71 16 47 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 48 H 0.00 0.19 7.49 -2.38 -0.02 0.17 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 52 H 0.09 2.81 6.85 -2.39 -0.02 2.80 16 53 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -75.19 395.60 4.03 -71.17 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.88 Total: 16.47 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 7.18 Total: 6.71 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -4.55 Total: -111.96 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.51 Total: -31.62 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -75.19 4.03 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661003.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.045 kcal (2) G-P(sol) polarization free energy of solvation -75.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds