Wall clock time and date at job start Tue Mar 31 2020 21:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00060 * 2 1 4 4 C 1.53002 * 109.47184 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46990 * 239.99937 * 3 2 1 6 6 C 1.53002 * 109.46973 * 119.99939 * 3 2 1 7 7 C 1.50699 * 109.46973 * 179.97438 * 6 3 2 8 8 O 1.21280 * 120.00302 * 0.02562 * 7 6 3 9 9 N 1.34774 * 119.99714 * 180.02562 * 7 6 3 10 10 C 1.47165 * 121.07396 * 359.97438 * 9 7 6 11 11 C 1.53280 * 108.55475 * 231.24475 * 10 9 7 12 12 H 1.08994 * 109.50923 * 66.93716 * 11 10 9 13 13 C 1.53005 * 109.50926 * 187.07732 * 11 10 9 14 14 O 1.43119 * 109.23507 * 307.00518 * 11 10 9 15 15 C 1.41885 * 114.36334 * 60.90789 * 14 11 10 16 16 C 1.54358 * 110.75247 * 176.66175 * 15 14 11 17 17 C 1.54467 * 102.94363 * 276.13001 * 16 15 14 18 18 N 1.47092 * 107.29304 * 338.84680 * 17 16 15 19 19 C 1.36943 * 125.62862 * 178.89920 * 18 17 16 20 20 H 1.07994 * 119.99806 * 170.95152 * 19 18 17 21 21 C 1.38814 * 119.99794 * 350.95234 * 19 18 17 22 22 N 1.31622 * 119.99545 * 164.58901 * 21 19 18 23 23 Si 1.86802 * 120.00251 * 344.30625 * 21 19 18 24 24 H 1.48491 * 109.47177 * 185.79035 * 23 21 19 25 25 H 1.48506 * 109.46990 * 305.79437 * 23 21 19 26 26 H 1.48505 * 109.46865 * 65.79219 * 23 21 19 27 27 C 1.47566 * 108.74089 * 358.63955 * 18 17 16 28 28 C 1.47330 * 121.07535 * 180.02562 * 9 7 6 29 29 H 1.08005 * 120.00024 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00178 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99767 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46828 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46824 * 299.99903 * 4 3 2 34 34 H 1.08996 * 109.47042 * 59.99330 * 4 3 2 35 35 H 1.08997 * 109.47086 * 300.00059 * 5 3 2 36 36 H 1.08991 * 109.47222 * 60.00491 * 5 3 2 37 37 H 1.09000 * 109.47066 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.46818 * 60.00067 * 6 3 2 39 39 H 1.08996 * 109.46872 * 300.00436 * 6 3 2 40 40 H 1.09006 * 109.62323 * 111.52865 * 10 9 7 41 41 H 1.09000 * 109.62706 * 350.97217 * 10 9 7 42 42 H 1.09001 * 109.46740 * 179.76018 * 13 11 10 43 43 H 1.08994 * 109.47565 * 299.76309 * 13 11 10 44 44 H 1.09005 * 109.47111 * 59.76495 * 13 11 10 45 45 H 1.08996 * 110.73281 * 34.67075 * 16 15 14 46 46 H 1.08996 * 110.73362 * 157.79971 * 16 15 14 47 47 H 1.08998 * 109.99247 * 219.36204 * 17 16 15 48 48 H 1.09005 * 109.77633 * 98.20703 * 17 16 15 49 49 H 0.96996 * 120.00172 * 354.98736 * 22 21 19 50 50 H 1.09001 * 110.38049 * 142.37568 * 27 18 17 51 51 H 1.09005 * 110.37312 * 264.61883 * 27 18 17 52 52 H 1.09004 * 109.67147 * 11.06618 * 28 9 7 53 53 H 1.08995 * 109.68172 * 250.52814 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9431 1.3861 1.2493 7 6 3.6971 2.6909 1.2490 8 8 3.5455 3.4787 0.3394 9 7 4.5399 2.9824 2.2595 10 6 4.7413 2.0441 3.3752 11 6 4.5478 2.8037 4.6924 12 1 3.5057 3.1090 4.7867 13 6 4.9236 1.8963 5.8655 14 8 5.3877 3.9625 4.6961 15 6 5.1132 4.8878 3.6561 16 6 6.0070 6.1393 3.7874 17 6 5.2358 7.0103 4.8036 18 7 3.8365 6.5570 4.7946 19 6 2.8296 7.0611 5.5741 20 1 1.8070 6.7648 5.3933 21 6 3.1236 7.9528 6.5965 22 7 2.1626 8.6666 7.1437 23 14 4.8818 8.1339 7.2011 24 1 4.9091 9.0352 8.3809 25 1 5.4134 6.8012 7.5838 26 1 5.7205 8.7094 6.1191 27 6 3.6953 5.4738 3.8025 28 6 5.2885 4.2511 2.2835 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.6143 3.4119 0.0011 33 1 0.4423 2.4105 -0.8891 34 1 0.4429 2.4100 0.8908 35 1 3.6514 0.5576 -1.2492 36 1 2.3165 1.3284 -2.1391 37 1 3.4885 2.3298 -1.2490 38 1 3.6514 0.5576 1.2492 39 1 2.3164 1.3283 2.1392 40 1 5.7513 1.6363 3.3328 41 1 4.0140 1.2349 3.3089 42 1 4.7898 2.4386 6.8016 43 1 4.2837 1.0140 5.8621 44 1 5.9653 1.5901 5.7688 45 1 6.9909 5.8721 4.1730 46 1 6.0958 6.6523 2.8298 47 1 5.2876 8.0589 4.5107 48 1 5.6611 6.8799 5.7987 49 1 1.2624 8.6239 6.7850 50 1 3.0058 4.7125 4.1672 51 1 3.3481 5.8744 2.8500 52 1 4.9002 4.9208 1.5161 53 1 6.3454 4.0572 2.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131661004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:06 Heat of formation + Delta-G solvation = -13.404909 kcal Electronic energy + Delta-G solvation = -31803.042738 eV Core-core repulsion = 27869.955250 eV Total energy + Delta-G solvation = -3933.087488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.92657 -39.51644 -37.27721 -36.64010 -34.72476 -33.30752 -31.72663 -31.47229 -29.90396 -29.15178 -28.01355 -27.36499 -26.69445 -25.50878 -23.53783 -22.46764 -21.85303 -20.90213 -19.77746 -18.97307 -18.32484 -17.54999 -17.35598 -16.71730 -16.00522 -15.82403 -15.63888 -15.24252 -14.71536 -14.63446 -14.23893 -14.22193 -14.04808 -13.64675 -13.34645 -13.30792 -12.98055 -12.84807 -12.46919 -12.39359 -12.26865 -12.14154 -11.95630 -11.88214 -11.58392 -11.41088 -11.27907 -11.26838 -11.22634 -11.06767 -11.04709 -10.87595 -10.79564 -10.39161 -10.02353 -9.70638 -9.60618 -9.50417 -9.32003 -8.95601 -8.65178 -8.45148 -6.99602 -6.28069 -3.17693 2.04680 2.52565 2.80356 3.45540 3.55732 3.70753 3.76282 4.26628 4.52279 4.56605 4.66212 4.68489 4.76024 4.80055 4.90297 4.91812 5.04709 5.09432 5.12612 5.20180 5.26051 5.32062 5.33537 5.42828 5.47160 5.49955 5.52591 5.59498 5.62743 5.68248 5.70417 5.83260 5.87049 5.90550 5.92209 5.98317 6.05110 6.10437 6.14624 6.21620 6.29362 6.37471 6.39900 6.45822 6.48766 6.53361 6.59798 6.77542 7.27626 7.48758 7.67870 8.09802 8.35930 9.07185 9.58604 10.25521 11.22807 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003430 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.050649 B = 8161.005005 C = 8572.935299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.019 4.019 4 C -0.157 4.157 5 C -0.148 4.148 6 C -0.128 4.128 7 C 0.519 3.481 8 O -0.529 6.529 9 N -0.613 5.613 10 C 0.079 3.921 11 C 0.069 3.931 12 H 0.070 0.930 13 C -0.141 4.141 14 O -0.349 6.349 15 C 0.088 3.912 16 C -0.113 4.113 17 C 0.115 3.885 18 N -0.607 5.607 19 C -0.319 4.319 20 H 0.076 0.924 21 C -0.021 4.021 22 N -0.929 5.929 23 Si 1.071 2.929 24 H -0.303 1.303 25 H -0.296 1.296 26 H -0.287 1.287 27 C 0.123 3.877 28 C 0.099 3.901 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.033 0.967 49 H 0.261 0.739 50 H 0.044 0.956 51 H 0.032 0.968 52 H 0.103 0.897 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -20.082 -12.803 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.165 4.165 3 C -0.020 4.020 4 C -0.214 4.214 5 C -0.205 4.205 6 C -0.167 4.167 7 C 0.309 3.691 8 O -0.406 6.406 9 N -0.347 5.347 10 C -0.045 4.045 11 C 0.011 3.989 12 H 0.088 0.912 13 C -0.199 4.199 14 O -0.268 6.268 15 C 0.047 3.953 16 C -0.151 4.151 17 C -0.010 4.010 18 N -0.334 5.334 19 C -0.446 4.446 20 H 0.094 0.906 21 C -0.220 4.220 22 N -0.571 5.571 23 Si 0.905 3.095 24 H -0.232 1.232 25 H -0.224 1.224 26 H -0.214 1.214 27 C -0.004 4.004 28 C -0.024 4.024 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.049 0.951 52 H 0.122 0.878 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.102 -18.833 -11.978 23.139 hybrid contribution -1.224 -1.141 -1.163 2.038 sum 4.878 -19.975 -13.142 24.403 Atomic orbital electron populations 1.24044 0.96206 1.02148 1.00742 1.22928 0.95940 0.97485 1.00127 1.19374 0.94934 0.93359 0.94289 1.22193 0.98583 0.99641 1.00987 1.22045 0.99181 1.03449 0.95862 1.21737 0.99145 0.95587 1.00264 1.20605 0.78734 0.88619 0.81189 1.90575 1.64183 1.50632 1.35236 1.48240 1.44124 1.19679 1.22667 1.22540 1.02785 0.92478 0.86680 1.22474 0.96056 0.86549 0.93823 0.91248 1.21696 1.02080 0.98297 0.97816 1.87826 1.57658 1.30669 1.50653 1.22345 0.97790 0.89190 0.85985 1.22503 0.98557 0.93433 1.00625 1.21991 0.85828 0.96787 0.96386 1.44768 1.05018 1.38855 1.44809 1.20136 0.87297 1.24837 1.12361 0.90612 1.25815 1.06093 0.95003 0.95098 1.70900 1.02471 1.39486 1.44221 0.83834 0.75242 0.75091 0.75334 1.23193 1.22430 1.21438 1.21974 0.93645 0.91083 0.93668 1.22103 0.96256 0.85612 0.98443 0.88745 0.87710 0.87588 0.89411 0.92774 0.93113 0.93535 0.92979 0.89454 0.88966 0.88825 0.90476 0.89034 0.90971 0.91107 0.91804 0.90105 0.89769 0.93559 0.94932 0.92948 0.93761 0.95052 0.87839 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 13.70 29.02 0.40 -1.22 16 2 C -0.15 -1.25 8.76 -36.03 -0.32 -1.56 16 3 C -0.02 -0.19 0.74 -155.66 -0.11 -0.30 16 4 C -0.16 -1.80 6.83 37.16 0.25 -1.54 16 5 C -0.15 -1.52 8.16 37.16 0.30 -1.21 16 6 C -0.13 -1.21 3.12 -27.88 -0.09 -1.30 16 7 C 0.52 6.57 7.13 -10.99 -0.08 6.50 16 8 O -0.53 -8.09 10.84 5.56 0.06 -8.03 16 9 N -0.61 -7.69 2.95 -172.72 -0.51 -8.20 16 10 C 0.08 0.81 5.81 -3.53 -0.02 0.79 16 11 C 0.07 0.93 3.20 -26.58 -0.08 0.85 16 12 H 0.07 1.08 6.25 -51.93 -0.32 0.75 16 13 C -0.14 -1.53 9.57 37.16 0.36 -1.17 16 14 O -0.35 -5.95 9.92 -35.22 -0.35 -6.30 16 15 C 0.09 1.50 0.83 -89.67 -0.07 1.42 16 16 C -0.11 -1.92 6.12 -25.25 -0.15 -2.08 16 17 C 0.11 2.57 4.64 -2.95 -0.01 2.56 16 18 N -0.61 -15.34 3.34 -170.30 -0.57 -15.91 16 19 C -0.32 -9.40 10.56 -15.06 -0.16 -9.56 16 20 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 21 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 22 N -0.93 -29.79 13.70 55.49 0.76 -29.03 16 23 Si 1.07 27.61 24.54 -169.99 -4.17 23.44 16 24 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 25 H -0.30 -7.45 6.83 56.52 0.39 -7.06 16 26 H -0.29 -6.74 5.44 56.52 0.31 -6.44 16 27 C 0.12 2.56 6.18 -2.87 -0.02 2.55 16 28 C 0.10 1.38 5.29 -3.94 -0.02 1.36 16 29 H 0.09 0.66 8.06 -52.48 -0.42 0.23 16 30 H 0.10 0.91 5.69 -52.48 -0.30 0.61 16 31 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.09 1.23 5.51 -51.93 -0.29 0.94 16 33 H 0.05 0.57 7.49 -51.93 -0.39 0.18 16 34 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.08 5.51 -51.93 -0.29 0.80 16 38 H 0.09 0.69 8.01 -51.93 -0.42 0.27 16 39 H 0.09 0.84 7.67 -51.93 -0.40 0.44 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.70 6.05 -51.93 -0.31 0.39 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.24 7.99 -51.93 -0.42 0.82 16 47 H 0.05 1.07 6.82 -51.93 -0.35 0.72 16 48 H 0.03 0.79 3.73 -51.93 -0.19 0.59 16 49 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 50 H 0.04 0.95 6.09 -51.93 -0.32 0.64 16 51 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 52 H 0.10 1.55 6.86 -51.93 -0.36 1.20 16 53 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -34.32 387.84 -7.92 -42.24 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -9.06 Total: 0.62 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 0.07 Total: -4.67 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.32 Total: -53.14 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.29 Total: -14.34 kcal Atomic # 14 Polarization: 27.61 SS G_CDS: -4.17 Total: 23.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.32 -7.92 -42.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.832 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds