Wall clock time and date at job start Tue Mar 31 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00060 * 2 1 4 4 C 1.53002 * 109.47184 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46990 * 239.99937 * 3 2 1 6 6 C 1.53002 * 109.46973 * 119.99939 * 3 2 1 7 7 C 1.50699 * 109.46973 * 179.97438 * 6 3 2 8 8 O 1.21280 * 120.00302 * 0.02562 * 7 6 3 9 9 N 1.34774 * 119.99714 * 180.02562 * 7 6 3 10 10 C 1.47165 * 121.07396 * 359.97438 * 9 7 6 11 11 C 1.53280 * 108.55475 * 231.24475 * 10 9 7 12 12 H 1.08994 * 109.50923 * 66.93716 * 11 10 9 13 13 C 1.53005 * 109.50926 * 187.07732 * 11 10 9 14 14 O 1.43119 * 109.23507 * 307.00518 * 11 10 9 15 15 C 1.41885 * 114.36334 * 60.90789 * 14 11 10 16 16 C 1.54358 * 110.75247 * 176.66175 * 15 14 11 17 17 C 1.54467 * 102.94363 * 276.13001 * 16 15 14 18 18 N 1.47092 * 107.29304 * 338.84680 * 17 16 15 19 19 C 1.36943 * 125.62862 * 178.89920 * 18 17 16 20 20 H 1.07994 * 119.99806 * 170.95152 * 19 18 17 21 21 C 1.38814 * 119.99794 * 350.95234 * 19 18 17 22 22 N 1.31622 * 119.99545 * 164.58901 * 21 19 18 23 23 Si 1.86802 * 120.00251 * 344.30625 * 21 19 18 24 24 H 1.48491 * 109.47177 * 185.79035 * 23 21 19 25 25 H 1.48506 * 109.46990 * 305.79437 * 23 21 19 26 26 H 1.48505 * 109.46865 * 65.79219 * 23 21 19 27 27 C 1.47566 * 108.74089 * 358.63955 * 18 17 16 28 28 C 1.47330 * 121.07535 * 180.02562 * 9 7 6 29 29 H 1.08005 * 120.00024 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.00178 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.99767 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46828 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46824 * 299.99903 * 4 3 2 34 34 H 1.08996 * 109.47042 * 59.99330 * 4 3 2 35 35 H 1.08997 * 109.47086 * 300.00059 * 5 3 2 36 36 H 1.08991 * 109.47222 * 60.00491 * 5 3 2 37 37 H 1.09000 * 109.47066 * 180.02562 * 5 3 2 38 38 H 1.09003 * 109.46818 * 60.00067 * 6 3 2 39 39 H 1.08996 * 109.46872 * 300.00436 * 6 3 2 40 40 H 1.09006 * 109.62323 * 111.52865 * 10 9 7 41 41 H 1.09000 * 109.62706 * 350.97217 * 10 9 7 42 42 H 1.09001 * 109.46740 * 179.76018 * 13 11 10 43 43 H 1.08994 * 109.47565 * 299.76309 * 13 11 10 44 44 H 1.09005 * 109.47111 * 59.76495 * 13 11 10 45 45 H 1.08996 * 110.73281 * 34.67075 * 16 15 14 46 46 H 1.08996 * 110.73362 * 157.79971 * 16 15 14 47 47 H 1.08998 * 109.99247 * 219.36204 * 17 16 15 48 48 H 1.09005 * 109.77633 * 98.20703 * 17 16 15 49 49 H 0.96996 * 120.00172 * 354.98736 * 22 21 19 50 50 H 1.09001 * 110.38049 * 142.37568 * 27 18 17 51 51 H 1.09005 * 110.37312 * 264.61883 * 27 18 17 52 52 H 1.09004 * 109.67147 * 11.06618 * 28 9 7 53 53 H 1.08995 * 109.68172 * 250.52814 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3861 -1.2492 6 6 2.9431 1.3861 1.2493 7 6 3.6971 2.6909 1.2490 8 8 3.5455 3.4787 0.3394 9 7 4.5399 2.9824 2.2595 10 6 4.7413 2.0441 3.3752 11 6 4.5478 2.8037 4.6924 12 1 3.5057 3.1090 4.7867 13 6 4.9236 1.8963 5.8655 14 8 5.3877 3.9625 4.6961 15 6 5.1132 4.8878 3.6561 16 6 6.0070 6.1393 3.7874 17 6 5.2358 7.0103 4.8036 18 7 3.8365 6.5570 4.7946 19 6 2.8296 7.0611 5.5741 20 1 1.8070 6.7648 5.3933 21 6 3.1236 7.9528 6.5965 22 7 2.1626 8.6666 7.1437 23 14 4.8818 8.1339 7.2011 24 1 4.9091 9.0352 8.3809 25 1 5.4134 6.8012 7.5838 26 1 5.7205 8.7094 6.1191 27 6 3.6953 5.4738 3.8025 28 6 5.2885 4.2511 2.2835 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.6143 3.4119 0.0011 33 1 0.4423 2.4105 -0.8891 34 1 0.4429 2.4100 0.8908 35 1 3.6514 0.5576 -1.2492 36 1 2.3165 1.3284 -2.1391 37 1 3.4885 2.3298 -1.2490 38 1 3.6514 0.5576 1.2492 39 1 2.3164 1.3283 2.1392 40 1 5.7513 1.6363 3.3328 41 1 4.0140 1.2349 3.3089 42 1 4.7898 2.4386 6.8016 43 1 4.2837 1.0140 5.8621 44 1 5.9653 1.5901 5.7688 45 1 6.9909 5.8721 4.1730 46 1 6.0958 6.6523 2.8298 47 1 5.2876 8.0589 4.5107 48 1 5.6611 6.8799 5.7987 49 1 1.2624 8.6239 6.7850 50 1 3.0058 4.7125 4.1672 51 1 3.3481 5.8744 2.8500 52 1 4.9002 4.9208 1.5161 53 1 6.3454 4.0572 2.1013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131661004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:05 Heat of formation + Delta-G solvation = -36.548744 kcal Electronic energy + Delta-G solvation = -31804.046330 eV Core-core repulsion = 27869.955250 eV Total energy + Delta-G solvation = -3934.091080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.01053 -40.64719 -38.40786 -37.87548 -35.81637 -35.04183 -33.40621 -32.22514 -31.32038 -30.54946 -29.19058 -28.23222 -27.75869 -26.85271 -25.09709 -23.29726 -23.21326 -22.58926 -20.98702 -20.05785 -19.64594 -19.08151 -18.28602 -18.05860 -17.31258 -16.95324 -16.64019 -16.34588 -16.12655 -15.86769 -15.51206 -15.38376 -15.22111 -15.00257 -14.74653 -14.57907 -14.31738 -13.78371 -13.67200 -13.56010 -13.29971 -13.15826 -13.11031 -13.03711 -12.94905 -12.75223 -12.68553 -12.57156 -12.34286 -12.17657 -12.01768 -11.85697 -11.81008 -11.55656 -11.53022 -11.52143 -11.11385 -10.94691 -10.71602 -10.45804 -10.24634 -9.52329 -9.14678 -8.71170 -5.51946 1.37668 1.39882 1.48333 1.59103 1.71071 1.88749 2.51104 2.55219 3.05411 3.16847 3.44529 3.51849 3.59777 3.73829 3.78173 3.85614 3.96190 4.00755 4.05846 4.16292 4.20433 4.33997 4.35286 4.42986 4.46216 4.52869 4.55982 4.60230 4.63595 4.70764 4.71180 4.74826 4.81020 4.81790 4.86288 4.95063 4.97808 5.03936 5.05671 5.09690 5.11840 5.16141 5.28212 5.33012 5.43617 5.45085 5.54712 5.76274 5.95919 6.03238 6.28263 6.34980 6.76305 7.15727 7.36885 8.02758 8.81609 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003430 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.050649 B = 8161.005005 C = 8572.935299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.019 4.019 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.123 4.123 7 C 0.512 3.488 8 O -0.561 6.561 9 N -0.618 5.618 10 C 0.085 3.915 11 C 0.059 3.941 12 H 0.036 0.964 13 C -0.135 4.135 14 O -0.368 6.368 15 C 0.102 3.898 16 C -0.104 4.104 17 C 0.102 3.898 18 N -0.628 5.628 19 C -0.313 4.313 20 H 0.039 0.961 21 C -0.076 4.076 22 N -0.962 5.962 23 Si 1.113 2.887 24 H -0.311 1.311 25 H -0.286 1.286 26 H -0.249 1.249 27 C 0.122 3.878 28 C 0.107 3.893 29 H 0.111 0.889 30 H 0.093 0.907 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.039 0.961 48 H 0.027 0.973 49 H 0.246 0.754 50 H 0.029 0.971 51 H 0.021 0.979 52 H 0.089 0.911 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.217 -23.572 -13.876 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.163 4.163 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.201 4.201 6 C -0.162 4.162 7 C 0.303 3.697 8 O -0.441 6.441 9 N -0.351 5.351 10 C -0.037 4.037 11 C 0.001 3.999 12 H 0.054 0.946 13 C -0.192 4.192 14 O -0.287 6.287 15 C 0.061 3.939 16 C -0.142 4.142 17 C -0.022 4.022 18 N -0.356 5.356 19 C -0.441 4.441 20 H 0.057 0.943 21 C -0.269 4.269 22 N -0.606 5.606 23 Si 0.940 3.060 24 H -0.240 1.240 25 H -0.214 1.214 26 H -0.174 1.174 27 C -0.004 4.004 28 C -0.017 4.017 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.141 0.859 42 H 0.063 0.937 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.057 0.943 48 H 0.044 0.956 49 H 0.055 0.945 50 H 0.047 0.953 51 H 0.038 0.962 52 H 0.107 0.893 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.130 -22.366 -13.089 27.476 hybrid contribution -2.343 -0.080 -0.875 2.502 sum 6.788 -22.446 -13.964 27.293 Atomic orbital electron populations 1.24155 0.96454 1.02457 1.00597 1.22954 0.95869 0.97294 1.00191 1.19362 0.94637 0.93402 0.94553 1.22141 0.98796 0.99284 1.00962 1.21970 0.99322 1.02834 0.95985 1.21796 0.99458 0.94721 1.00240 1.21226 0.78383 0.89422 0.80671 1.90585 1.64968 1.51889 1.36620 1.48365 1.43939 1.19505 1.23301 1.22670 1.05340 0.92009 0.83689 1.22729 0.93887 0.86222 0.97017 0.94570 1.21710 1.03967 0.98380 0.95188 1.87801 1.58148 1.31745 1.51019 1.22156 0.94191 0.89678 0.87914 1.22563 0.98893 0.92373 1.00378 1.22161 0.84577 0.97637 0.97813 1.44855 1.05636 1.40329 1.44731 1.20007 0.87172 1.24242 1.12707 0.94306 1.27143 1.09255 0.94911 0.95592 1.71002 1.02323 1.41695 1.45595 0.83337 0.71526 0.75546 0.75543 1.24047 1.21417 1.17404 1.22069 0.96883 0.89782 0.91659 1.21918 0.97997 0.86169 0.95592 0.87115 0.88885 0.85283 0.92386 0.92552 0.93428 0.91652 0.93120 0.91900 0.85588 0.88007 0.87823 0.85930 0.93709 0.87962 0.89972 0.87130 0.87239 0.94320 0.95620 0.94485 0.95274 0.96158 0.89311 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.91 13.70 67.78 0.93 -1.98 16 2 C -0.15 -2.04 8.76 25.65 0.22 -1.81 16 3 C -0.02 -0.34 0.74 -52.93 -0.04 -0.38 16 4 C -0.15 -3.58 6.83 71.98 0.49 -3.09 16 5 C -0.14 -2.70 8.16 71.98 0.59 -2.11 16 6 C -0.12 -1.97 3.12 29.85 0.09 -1.88 16 7 C 0.51 12.09 7.13 87.66 0.62 12.72 16 8 O -0.56 -17.13 10.84 -3.03 -0.03 -17.16 16 9 N -0.62 -13.91 2.95 -818.75 -2.42 -16.33 16 10 C 0.09 1.41 5.81 86.35 0.50 1.92 16 11 C 0.06 1.47 3.20 30.69 0.10 1.57 16 12 H 0.04 1.13 6.25 -2.39 -0.01 1.11 16 13 C -0.14 -2.55 9.57 71.98 0.69 -1.86 16 14 O -0.37 -11.76 9.92 -148.95 -1.48 -13.24 16 15 C 0.10 3.29 0.83 -10.18 -0.01 3.28 16 16 C -0.10 -3.25 6.12 31.55 0.19 -3.06 16 17 C 0.10 4.45 4.64 86.77 0.40 4.85 16 18 N -0.63 -32.41 3.34 -692.72 -2.31 -34.73 16 19 C -0.31 -19.29 10.56 84.03 0.89 -18.40 16 20 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 22 N -0.96 -64.34 13.70 21.65 0.30 -64.04 16 23 Si 1.11 56.30 24.54 68.60 1.68 57.98 16 24 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 25 H -0.29 -13.91 6.83 99.48 0.68 -13.23 16 26 H -0.25 -11.02 5.44 99.48 0.54 -10.48 16 27 C 0.12 5.20 6.18 86.55 0.53 5.74 16 28 C 0.11 2.73 5.29 86.00 0.46 3.18 16 29 H 0.11 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.09 1.55 5.69 -2.91 -0.02 1.54 16 31 H 0.13 1.26 8.06 -2.91 -0.02 1.24 16 32 H 0.06 1.71 5.51 -2.39 -0.01 1.69 16 33 H 0.06 1.22 7.49 -2.39 -0.02 1.20 16 34 H 0.05 1.08 7.50 -2.39 -0.02 1.06 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.52 5.51 -2.39 -0.01 1.51 16 38 H 0.13 1.21 8.01 -2.39 -0.02 1.19 16 39 H 0.10 1.51 7.67 -2.39 -0.02 1.49 16 40 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.12 1.28 6.05 -2.39 -0.01 1.27 16 42 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.11 2.86 7.99 -2.39 -0.02 2.84 16 47 H 0.04 1.74 6.82 -2.39 -0.02 1.72 16 48 H 0.03 1.19 3.73 -2.38 -0.01 1.19 16 49 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 50 H 0.03 1.31 6.09 -2.39 -0.01 1.30 16 51 H 0.02 0.92 7.82 -2.38 -0.02 0.90 16 52 H 0.09 2.56 6.86 -2.38 -0.02 2.55 16 53 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -80.77 387.84 3.52 -77.25 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.65 Total: 15.88 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 7.13 Total: -5.62 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.44 Total: -115.09 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.51 Total: -30.40 kcal Atomic # 14 Polarization: 56.30 SS G_CDS: 1.68 Total: 57.98 kcal Total: -80.77 3.52 -77.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.699 kcal (2) G-P(sol) polarization free energy of solvation -80.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds