Wall clock time and date at job start Tue Mar 31 2020 21:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99798 * 2 1 4 4 C 1.53006 * 109.47239 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46961 * 240.00101 * 3 2 1 6 6 C 1.52997 * 109.47466 * 119.99751 * 3 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 3 10 10 C 1.47161 * 121.06292 * 359.72118 * 9 7 6 11 11 C 1.53709 * 108.30506 * 128.81237 * 10 9 7 12 12 H 1.09001 * 109.65456 * 293.20800 * 11 10 9 13 13 C 1.52993 * 109.48739 * 173.02667 * 11 10 9 14 14 O 1.43094 * 109.14063 * 53.16750 * 11 10 9 15 15 C 1.42068 * 114.35656 * 298.70852 * 14 11 10 16 16 C 1.54508 * 110.34893 * 297.95504 * 15 14 11 17 17 C 1.55027 * 101.52611 * 276.08853 * 16 15 14 18 18 N 1.47486 * 104.89676 * 323.62418 * 17 16 15 19 19 C 1.36943 * 125.66189 * 204.04838 * 18 17 16 20 20 H 1.07995 * 119.99884 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99584 * 359.95507 * 19 18 17 22 22 N 1.31613 * 120.00666 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99655 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47015 * 89.99966 * 23 21 19 25 25 H 1.48499 * 109.47106 * 210.00123 * 23 21 19 26 26 H 1.48498 * 109.46982 * 330.00371 * 23 21 19 27 27 C 1.47185 * 108.67312 * 24.00824 * 18 17 16 28 28 C 1.47299 * 121.05751 * 180.02562 * 9 7 6 29 29 H 1.08002 * 119.99626 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00334 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47050 * 300.00336 * 4 3 2 34 34 H 1.09001 * 109.47002 * 60.00070 * 4 3 2 35 35 H 1.09002 * 109.46716 * 299.99650 * 5 3 2 36 36 H 1.09000 * 109.47486 * 59.99568 * 5 3 2 37 37 H 1.09001 * 109.47362 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47153 * 59.99773 * 6 3 2 39 39 H 1.09001 * 109.46832 * 299.99964 * 6 3 2 40 40 H 1.08994 * 109.62499 * 248.57926 * 10 9 7 41 41 H 1.09001 * 109.62745 * 9.15886 * 10 9 7 42 42 H 1.09005 * 109.47440 * 300.37231 * 13 11 10 43 43 H 1.09008 * 109.46947 * 60.36243 * 13 11 10 44 44 H 1.09000 * 109.47521 * 180.36637 * 13 11 10 45 45 H 1.09001 * 111.01467 * 34.14332 * 16 15 14 46 46 H 1.08990 * 111.01528 * 158.02527 * 16 15 14 47 47 H 1.09002 * 110.35520 * 204.77181 * 17 16 15 48 48 H 1.09005 * 110.44802 * 82.52279 * 17 16 15 49 49 H 0.96999 * 120.00454 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.90353 * 239.13568 * 27 18 17 51 51 H 1.08995 * 109.90571 * 117.88217 * 27 18 17 52 52 H 1.09006 * 109.67688 * 349.07220 * 28 9 7 53 53 H 1.09000 * 109.68066 * 109.61376 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6912 1.2488 8 8 3.5453 3.4788 0.3392 9 7 4.5390 2.9832 2.2599 10 6 4.7352 2.0478 3.3789 11 6 6.2449 1.8247 3.5625 12 1 6.6454 1.2966 2.6972 13 6 6.4885 0.9957 4.8251 14 8 6.8944 3.0933 3.6910 15 6 6.7549 3.9403 2.5591 16 6 7.4010 3.2875 1.3166 17 6 8.8871 3.6928 1.4912 18 7 8.8448 5.0537 2.0582 19 6 9.8391 5.9903 1.9612 20 1 9.7107 6.9629 2.4127 21 6 11.0121 5.6894 1.2827 22 7 11.1686 4.5042 0.7323 23 14 12.3688 6.9668 1.1509 24 1 13.2933 6.8279 2.3047 25 1 13.1205 6.7619 -0.1133 26 1 11.7710 8.3261 1.1566 27 6 7.5561 5.2382 2.7449 28 6 5.2871 4.2519 2.2834 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.6142 3.4120 -0.0011 33 1 0.4428 2.4101 -0.8908 34 1 0.4422 2.4105 0.8891 35 1 3.6514 0.5577 -1.2492 36 1 2.3164 1.3283 -2.1393 37 1 3.4884 2.3299 -1.2491 38 1 3.6514 0.5578 1.2493 39 1 2.3163 1.3286 2.1392 40 1 4.3116 2.4719 4.2892 41 1 4.2487 1.0990 3.1526 42 1 6.0860 1.5235 5.6897 43 1 5.9933 0.0296 4.7265 44 1 7.5595 0.8431 4.9587 45 1 7.2862 2.2038 1.3402 46 1 6.9879 3.7028 0.3975 47 1 9.3941 3.6998 0.5263 48 1 9.3896 3.0115 2.1778 49 1 11.9885 4.2938 0.2586 50 1 7.0159 6.0747 2.3017 51 1 7.7240 5.4221 3.8061 52 1 5.1928 4.7515 1.3192 53 1 4.8942 4.8952 3.0707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131661005.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:10 Heat of formation + Delta-G solvation = -21.653628 kcal Electronic energy + Delta-G solvation = -31438.154401 eV Core-core repulsion = 27504.709222 eV Total energy + Delta-G solvation = -3933.445179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.82904 -39.38660 -37.18624 -36.34807 -34.64854 -33.13651 -31.53483 -31.31967 -29.59883 -28.85811 -27.81915 -27.35780 -26.51734 -25.35221 -23.71095 -22.43940 -21.96612 -20.16146 -19.63655 -18.94833 -18.31304 -17.33040 -17.04756 -16.54230 -15.89520 -15.66337 -15.49478 -14.84263 -14.70135 -14.44694 -14.22149 -14.16578 -13.87240 -13.43948 -13.21751 -13.14636 -12.81521 -12.55295 -12.35819 -12.30638 -12.18723 -12.02091 -11.84385 -11.68904 -11.53725 -11.42540 -11.24158 -11.03988 -11.01126 -10.91238 -10.86343 -10.78684 -10.48430 -10.19316 -10.05450 -9.99704 -9.61564 -9.60771 -9.47815 -9.42234 -8.62613 -8.34167 -6.81784 -5.62624 -3.04365 2.03952 2.58626 2.88154 3.42394 3.46906 3.49146 3.81976 4.30555 4.49971 4.55829 4.63415 4.70140 4.79808 4.86588 5.03204 5.05825 5.13601 5.14127 5.19719 5.32922 5.33493 5.44553 5.48308 5.50217 5.52522 5.58339 5.58851 5.70745 5.75643 5.84595 5.86498 5.90003 5.93844 5.96280 6.00576 6.12374 6.22964 6.29767 6.33719 6.36682 6.49838 6.53445 6.55608 6.59328 6.60891 6.69639 7.35923 7.55004 7.62331 7.66464 7.87456 8.16682 8.37166 9.23793 9.84260 10.49168 11.41413 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.002963 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.249299 B = 9446.661972 C =10192.218539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.127 4.127 7 C 0.518 3.482 8 O -0.529 6.529 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.068 3.932 12 H 0.067 0.933 13 C -0.142 4.142 14 O -0.353 6.353 15 C 0.096 3.904 16 C -0.164 4.164 17 C 0.160 3.840 18 N -0.601 5.601 19 C -0.221 4.221 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.154 3.846 28 C 0.099 3.901 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.105 0.895 48 H 0.014 0.986 49 H 0.252 0.748 50 H 0.039 0.961 51 H 0.036 0.964 52 H 0.103 0.897 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.036 -11.318 3.574 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.207 4.207 6 C -0.167 4.167 7 C 0.307 3.693 8 O -0.406 6.406 9 N -0.345 5.345 10 C -0.045 4.045 11 C 0.010 3.990 12 H 0.085 0.915 13 C -0.199 4.199 14 O -0.271 6.271 15 C 0.055 3.945 16 C -0.202 4.202 17 C 0.035 3.965 18 N -0.328 5.328 19 C -0.349 4.349 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.027 3.973 28 C -0.024 4.024 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.123 0.877 48 H 0.032 0.968 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.121 0.879 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.806 -10.799 3.149 22.777 hybrid contribution 0.562 0.235 -0.052 0.611 sum -19.244 -10.564 3.098 22.170 Atomic orbital electron populations 1.24006 0.96168 1.02009 1.01310 1.22963 0.95927 0.97629 0.99603 1.19383 0.94912 0.93218 0.94515 1.22178 0.98497 0.99774 1.00755 1.22065 0.99190 1.03846 0.95640 1.21729 0.99090 0.95863 1.00011 1.20581 0.79096 0.88545 0.81085 1.90580 1.64348 1.50778 1.34923 1.48237 1.43722 1.19997 1.22585 1.22603 0.98004 0.93868 0.90034 1.22535 0.90409 0.86710 0.99388 0.91507 1.21703 1.03423 0.98430 0.96385 1.87910 1.74353 1.25881 1.38998 1.22292 0.92498 0.92644 0.87033 1.23484 1.01173 0.99056 0.96522 1.21882 0.89093 0.84575 1.00900 1.44501 1.13677 1.12420 1.62186 1.19071 0.93566 0.93442 1.28801 0.90375 1.24784 0.98122 0.97131 1.00647 1.69800 1.26402 1.19972 1.40915 0.86056 0.81837 0.80397 0.77111 1.21653 1.21686 1.20667 1.21056 0.87893 0.91430 0.96898 1.22188 0.91085 0.85166 1.03967 0.88791 0.87836 0.87516 0.89444 0.92806 0.93364 0.93331 0.92993 0.89276 0.88906 0.89040 0.90526 0.89206 0.91745 0.91240 0.91137 0.92249 0.91356 0.87714 0.96832 0.93765 0.94322 0.94591 0.87867 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 13.70 29.01 0.40 -1.12 16 2 C -0.14 -1.19 8.76 -36.03 -0.32 -1.51 16 3 C -0.02 -0.20 0.74 -155.66 -0.11 -0.31 16 4 C -0.16 -1.61 6.83 37.16 0.25 -1.35 16 5 C -0.15 -1.69 8.16 37.16 0.30 -1.39 16 6 C -0.13 -1.20 3.12 -27.88 -0.09 -1.29 16 7 C 0.52 6.69 7.13 -10.98 -0.08 6.61 16 8 O -0.53 -8.35 10.83 5.56 0.06 -8.29 16 9 N -0.61 -7.95 2.91 -172.34 -0.50 -8.45 16 10 C 0.08 0.81 5.84 -3.31 -0.02 0.79 16 11 C 0.07 0.87 3.19 -26.37 -0.08 0.79 16 12 H 0.07 0.91 6.14 -51.93 -0.32 0.59 16 13 C -0.14 -1.42 9.57 37.15 0.36 -1.07 16 14 O -0.35 -6.12 9.86 -35.23 -0.35 -6.47 16 15 C 0.10 1.74 0.83 -89.71 -0.07 1.66 16 16 C -0.16 -3.25 5.92 -24.87 -0.15 -3.40 16 17 C 0.16 4.02 5.89 -2.43 -0.01 4.00 16 18 N -0.60 -15.77 3.40 -170.23 -0.58 -16.35 16 19 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -27.27 10.09 55.49 0.56 -26.71 16 23 Si 0.92 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.15 3.30 6.61 -3.33 -0.02 3.28 16 28 C 0.10 1.52 5.17 -3.83 -0.02 1.50 16 29 H 0.09 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.10 0.79 5.69 -52.49 -0.30 0.49 16 31 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.09 1.12 5.51 -51.93 -0.29 0.83 16 33 H 0.05 0.52 7.50 -51.93 -0.39 0.13 16 34 H 0.05 0.45 7.50 -51.93 -0.39 0.06 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.23 5.51 -51.93 -0.29 0.95 16 38 H 0.09 0.76 7.68 -51.93 -0.40 0.36 16 39 H 0.09 0.72 8.00 -51.93 -0.42 0.30 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.67 6.05 -51.93 -0.31 0.36 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.08 5.99 -51.93 -0.31 0.77 16 46 H 0.07 1.40 7.86 -51.93 -0.41 0.99 16 47 H 0.11 2.94 5.88 -51.93 -0.31 2.64 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.04 0.80 7.79 -51.93 -0.40 0.39 16 51 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 52 H 0.10 1.75 6.89 -51.93 -0.36 1.39 16 53 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -31.93 394.63 -8.88 -40.81 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -9.08 Total: 1.80 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.08 Total: 0.39 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.52 Total: -51.51 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.29 Total: -14.75 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.93 -8.88 -40.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661005.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.159 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds