Wall clock time and date at job start Tue Mar 31 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99798 * 2 1 4 4 C 1.53006 * 109.47239 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46961 * 240.00101 * 3 2 1 6 6 C 1.52997 * 109.47466 * 119.99751 * 3 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 3 10 10 C 1.47161 * 121.06292 * 359.72118 * 9 7 6 11 11 C 1.53709 * 108.30506 * 128.81237 * 10 9 7 12 12 H 1.09001 * 109.65456 * 293.20800 * 11 10 9 13 13 C 1.52993 * 109.48739 * 173.02667 * 11 10 9 14 14 O 1.43094 * 109.14063 * 53.16750 * 11 10 9 15 15 C 1.42068 * 114.35656 * 298.70852 * 14 11 10 16 16 C 1.54508 * 110.34893 * 297.95504 * 15 14 11 17 17 C 1.55027 * 101.52611 * 276.08853 * 16 15 14 18 18 N 1.47486 * 104.89676 * 323.62418 * 17 16 15 19 19 C 1.36943 * 125.66189 * 204.04838 * 18 17 16 20 20 H 1.07995 * 119.99884 * 179.97438 * 19 18 17 21 21 C 1.38811 * 119.99584 * 359.95507 * 19 18 17 22 22 N 1.31613 * 120.00666 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99655 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47015 * 89.99966 * 23 21 19 25 25 H 1.48499 * 109.47106 * 210.00123 * 23 21 19 26 26 H 1.48498 * 109.46982 * 330.00371 * 23 21 19 27 27 C 1.47185 * 108.67312 * 24.00824 * 18 17 16 28 28 C 1.47299 * 121.05751 * 180.02562 * 9 7 6 29 29 H 1.08002 * 119.99626 * 179.97438 * 1 2 3 30 30 H 1.07992 * 120.00236 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00334 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.46955 * 180.02562 * 4 3 2 33 33 H 1.09000 * 109.47050 * 300.00336 * 4 3 2 34 34 H 1.09001 * 109.47002 * 60.00070 * 4 3 2 35 35 H 1.09002 * 109.46716 * 299.99650 * 5 3 2 36 36 H 1.09000 * 109.47486 * 59.99568 * 5 3 2 37 37 H 1.09001 * 109.47362 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.47153 * 59.99773 * 6 3 2 39 39 H 1.09001 * 109.46832 * 299.99964 * 6 3 2 40 40 H 1.08994 * 109.62499 * 248.57926 * 10 9 7 41 41 H 1.09001 * 109.62745 * 9.15886 * 10 9 7 42 42 H 1.09005 * 109.47440 * 300.37231 * 13 11 10 43 43 H 1.09008 * 109.46947 * 60.36243 * 13 11 10 44 44 H 1.09000 * 109.47521 * 180.36637 * 13 11 10 45 45 H 1.09001 * 111.01467 * 34.14332 * 16 15 14 46 46 H 1.08990 * 111.01528 * 158.02527 * 16 15 14 47 47 H 1.09002 * 110.35520 * 204.77181 * 17 16 15 48 48 H 1.09005 * 110.44802 * 82.52279 * 17 16 15 49 49 H 0.96999 * 120.00454 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.90353 * 239.13568 * 27 18 17 51 51 H 1.08995 * 109.90571 * 117.88217 * 27 18 17 52 52 H 1.09006 * 109.67688 * 349.07220 * 28 9 7 53 53 H 1.09000 * 109.68066 * 109.61376 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6912 1.2488 8 8 3.5453 3.4788 0.3392 9 7 4.5390 2.9832 2.2599 10 6 4.7352 2.0478 3.3789 11 6 6.2449 1.8247 3.5625 12 1 6.6454 1.2966 2.6972 13 6 6.4885 0.9957 4.8251 14 8 6.8944 3.0933 3.6910 15 6 6.7549 3.9403 2.5591 16 6 7.4010 3.2875 1.3166 17 6 8.8871 3.6928 1.4912 18 7 8.8448 5.0537 2.0582 19 6 9.8391 5.9903 1.9612 20 1 9.7107 6.9629 2.4127 21 6 11.0121 5.6894 1.2827 22 7 11.1686 4.5042 0.7323 23 14 12.3688 6.9668 1.1509 24 1 13.2933 6.8279 2.3047 25 1 13.1205 6.7619 -0.1133 26 1 11.7710 8.3261 1.1566 27 6 7.5561 5.2382 2.7449 28 6 5.2871 4.2519 2.2834 29 1 -0.5399 -0.9354 -0.0004 30 1 -0.5400 0.9352 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.6142 3.4120 -0.0011 33 1 0.4428 2.4101 -0.8908 34 1 0.4422 2.4105 0.8891 35 1 3.6514 0.5577 -1.2492 36 1 2.3164 1.3283 -2.1393 37 1 3.4884 2.3299 -1.2491 38 1 3.6514 0.5578 1.2493 39 1 2.3163 1.3286 2.1392 40 1 4.3116 2.4719 4.2892 41 1 4.2487 1.0990 3.1526 42 1 6.0860 1.5235 5.6897 43 1 5.9933 0.0296 4.7265 44 1 7.5595 0.8431 4.9587 45 1 7.2862 2.2038 1.3402 46 1 6.9879 3.7028 0.3975 47 1 9.3941 3.6998 0.5263 48 1 9.3896 3.0115 2.1778 49 1 11.9885 4.2938 0.2586 50 1 7.0159 6.0747 2.3017 51 1 7.7240 5.4221 3.8061 52 1 5.1928 4.7515 1.3192 53 1 4.8942 4.8952 3.0707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131661005.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:09 Heat of formation + Delta-G solvation = -40.663658 kcal Electronic energy + Delta-G solvation = -31438.978737 eV Core-core repulsion = 27504.709222 eV Total energy + Delta-G solvation = -3934.269516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.94200 -40.54608 -38.20825 -37.77770 -35.78749 -34.78745 -32.95579 -32.17524 -31.11760 -30.35996 -28.99724 -28.17622 -27.59491 -26.88861 -25.32467 -23.25852 -23.20177 -21.97304 -20.88505 -20.05236 -19.04051 -19.00699 -18.23760 -17.87776 -16.91975 -16.89292 -16.57379 -16.36828 -15.93867 -15.70413 -15.48951 -15.24462 -14.96538 -14.83077 -14.51679 -14.28880 -14.05118 -13.77505 -13.62707 -13.56880 -13.14223 -13.05787 -12.97674 -12.91381 -12.79998 -12.75461 -12.62884 -12.30828 -12.25184 -12.19408 -12.00214 -11.97878 -11.89182 -11.80245 -11.54278 -11.49321 -11.39299 -10.87431 -10.76321 -10.44040 -10.20098 -9.47193 -8.94243 -7.79701 -5.24972 1.44664 1.45337 1.47963 1.56669 1.63051 1.90744 2.45656 2.63015 3.30541 3.42038 3.53458 3.59561 3.79296 3.82946 3.87668 3.96248 3.98155 4.07868 4.13902 4.24485 4.37992 4.39357 4.46597 4.50587 4.51685 4.61513 4.64357 4.71767 4.74622 4.76425 4.78786 4.85307 4.87464 4.95312 5.00416 5.05464 5.07415 5.12704 5.13912 5.19987 5.31327 5.36267 5.42759 5.47618 5.54203 5.60228 5.72659 5.81728 5.99662 6.24530 6.35839 6.40624 7.06635 7.20175 7.72818 8.37617 9.22836 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.002963 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.249299 B = 9446.661972 C =10192.218539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.121 4.121 7 C 0.512 3.488 8 O -0.563 6.563 9 N -0.614 5.614 10 C 0.082 3.918 11 C 0.057 3.943 12 H 0.056 0.944 13 C -0.136 4.136 14 O -0.376 6.376 15 C 0.113 3.887 16 C -0.145 4.145 17 C 0.168 3.832 18 N -0.623 5.623 19 C -0.240 4.240 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.984 3.016 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.146 3.854 28 C 0.109 3.891 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.070 0.930 48 H -0.017 1.017 49 H 0.247 0.753 50 H 0.048 0.952 51 H 0.032 0.968 52 H 0.084 0.916 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.451 -12.983 4.981 26.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.020 4.020 4 C -0.208 4.208 5 C -0.206 4.206 6 C -0.160 4.160 7 C 0.303 3.697 8 O -0.443 6.443 9 N -0.347 5.347 10 C -0.040 4.040 11 C -0.001 4.001 12 H 0.074 0.926 13 C -0.193 4.193 14 O -0.296 6.296 15 C 0.073 3.927 16 C -0.184 4.184 17 C 0.043 3.957 18 N -0.350 5.350 19 C -0.368 4.368 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.812 3.188 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.192 1.192 27 C 0.021 3.979 28 C -0.015 4.015 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.148 0.852 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.001 0.999 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.050 0.950 52 H 0.102 0.898 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.257 -12.477 4.586 25.925 hybrid contribution 1.287 0.730 -0.484 1.556 sum -20.971 -11.747 4.102 24.384 Atomic orbital electron populations 1.24152 0.96077 1.02671 1.00064 1.22900 0.96049 0.97036 1.00677 1.19355 0.94687 0.93981 0.93937 1.22112 0.98516 0.98782 1.01435 1.22012 0.99415 1.02369 0.96823 1.21800 0.99351 0.93997 1.00880 1.21306 0.78819 0.89420 0.80184 1.90595 1.65349 1.52141 1.36167 1.48328 1.43366 1.19460 1.23588 1.22792 0.96203 0.95187 0.89797 1.22905 0.91924 0.84744 1.00497 0.92640 1.21728 1.02657 0.99776 0.95156 1.87877 1.75710 1.27765 1.38207 1.21923 0.93535 0.91025 0.86263 1.23244 0.97527 1.00247 0.97370 1.21571 0.91972 0.84096 0.98091 1.44800 1.14948 1.12359 1.62876 1.19487 0.94467 0.94204 1.28672 0.89815 1.25690 1.00537 0.99236 1.00637 1.70062 1.26629 1.21761 1.41593 0.84989 0.78648 0.78444 0.76700 1.21282 1.21894 1.19224 1.21231 0.86622 0.93982 0.96079 1.21837 0.89512 0.86834 1.03310 0.87250 0.88133 0.86111 0.92233 0.92751 0.92054 0.92638 0.93000 0.92340 0.86810 0.86313 0.88878 0.85245 0.91009 0.87459 0.93153 0.90445 0.92215 0.91187 0.99860 0.94311 0.93434 0.94962 0.89805 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.31 13.70 67.78 0.93 -1.38 16 2 C -0.15 -1.95 8.76 25.64 0.22 -1.73 16 3 C -0.02 -0.33 0.74 -52.93 -0.04 -0.37 16 4 C -0.15 -2.92 6.83 71.98 0.49 -2.43 16 5 C -0.15 -3.22 8.16 71.98 0.59 -2.63 16 6 C -0.12 -1.85 3.12 29.85 0.09 -1.76 16 7 C 0.51 12.29 7.13 87.66 0.62 12.91 16 8 O -0.56 -17.81 10.83 -3.03 -0.03 -17.85 16 9 N -0.61 -14.62 2.91 -817.55 -2.38 -16.99 16 10 C 0.08 1.38 5.84 86.49 0.51 1.89 16 11 C 0.06 1.33 3.19 30.83 0.10 1.43 16 12 H 0.06 1.41 6.14 -2.39 -0.01 1.40 16 13 C -0.14 -2.33 9.57 71.98 0.69 -1.64 16 14 O -0.38 -12.79 9.86 -148.97 -1.47 -14.26 16 15 C 0.11 4.12 0.83 -10.21 -0.01 4.12 16 16 C -0.15 -5.93 5.92 31.80 0.19 -5.74 16 17 C 0.17 8.86 5.89 86.88 0.51 9.37 16 18 N -0.62 -33.96 3.40 -692.49 -2.36 -36.32 16 19 C -0.24 -13.95 10.28 84.03 0.86 -13.09 16 20 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 22 N -0.95 -58.60 10.09 21.65 0.22 -58.38 16 23 Si 0.98 46.90 29.55 68.60 2.03 48.93 16 24 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.15 6.43 6.61 86.47 0.57 7.00 16 28 C 0.11 3.29 5.17 86.08 0.44 3.73 16 29 H 0.11 0.99 8.06 -2.91 -0.02 0.96 16 30 H 0.10 1.26 5.69 -2.91 -0.02 1.24 16 31 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.06 1.52 5.51 -2.39 -0.01 1.50 16 33 H 0.05 1.00 7.50 -2.39 -0.02 0.99 16 34 H 0.06 0.99 7.50 -2.39 -0.02 0.97 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.65 5.51 -2.39 -0.01 1.64 16 38 H 0.11 1.32 7.68 -2.39 -0.02 1.30 16 39 H 0.12 1.23 8.00 -2.39 -0.02 1.21 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.13 1.18 6.05 -2.39 -0.01 1.17 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 2.85 5.99 -2.39 -0.01 2.83 16 46 H 0.06 2.53 7.86 -2.39 -0.02 2.51 16 47 H 0.07 4.19 5.88 -2.39 -0.01 4.17 16 48 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 49 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.05 1.99 7.79 -2.39 -0.02 1.98 16 51 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 52 H 0.08 2.88 6.89 -2.38 -0.02 2.86 16 53 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -74.19 394.63 4.13 -70.06 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.88 Total: 18.71 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 7.24 Total: 6.10 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.52 Total: -111.69 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.50 Total: -32.11 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -74.19 4.13 -70.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661005.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.397 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds