Wall clock time and date at job start Tue Mar 31 2020 21:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99871 * 2 1 4 4 C 1.52996 * 109.47467 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.46900 * 239.99947 * 3 2 1 6 6 C 1.52999 * 109.47338 * 120.00051 * 3 2 1 7 7 C 1.50697 * 109.47148 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00288 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99944 * 180.02562 * 7 6 3 10 10 C 1.47166 * 121.07050 * 359.97438 * 9 7 6 11 11 C 1.53281 * 108.55396 * 128.89150 * 10 9 7 12 12 H 1.09002 * 109.50723 * 292.97373 * 11 10 9 13 13 C 1.52998 * 109.51399 * 172.87570 * 11 10 9 14 14 O 1.43093 * 109.22672 * 52.89496 * 11 10 9 15 15 C 1.42064 * 114.33639 * 298.85699 * 14 11 10 16 16 C 1.54493 * 110.39075 * 182.83648 * 15 14 11 17 17 C 1.55239 * 101.44115 * 83.76437 * 16 15 14 18 18 N 1.47485 * 104.78984 * 36.64878 * 17 16 15 19 19 C 1.36945 * 125.66186 * 155.93439 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.69397 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.69302 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47181 * 108.67779 * 335.67125 * 18 17 16 28 28 C 1.47309 * 121.06867 * 180.02562 * 9 7 6 29 29 H 1.07999 * 120.00085 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00073 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00095 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47460 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47391 * 300.00760 * 4 3 2 34 34 H 1.09006 * 109.47016 * 60.00178 * 4 3 2 35 35 H 1.09006 * 109.47039 * 300.00291 * 5 3 2 36 36 H 1.09002 * 109.46656 * 60.00037 * 5 3 2 37 37 H 1.08996 * 109.47347 * 179.97438 * 5 3 2 38 38 H 1.09008 * 109.47163 * 59.99991 * 6 3 2 39 39 H 1.08993 * 109.47185 * 299.99771 * 6 3 2 40 40 H 1.08996 * 109.62514 * 248.61364 * 10 9 7 41 41 H 1.09004 * 109.62078 * 9.17454 * 10 9 7 42 42 H 1.08999 * 109.46972 * 59.99368 * 13 11 10 43 43 H 1.08992 * 109.47322 * 180.02562 * 13 11 10 44 44 H 1.09001 * 109.46382 * 300.00350 * 13 11 10 45 45 H 1.08996 * 111.01355 * 201.99708 * 16 15 14 46 46 H 1.09005 * 111.00553 * 325.83010 * 16 15 14 47 47 H 1.09004 * 110.48494 * 277.79450 * 17 16 15 48 48 H 1.08996 * 110.33210 * 155.43215 * 17 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.90568 * 121.10492 * 27 18 17 51 51 H 1.08990 * 109.91304 * 242.18491 * 27 18 17 52 52 H 1.09001 * 109.68281 * 109.64594 * 28 9 7 53 53 H 1.09005 * 109.70691 * 349.11680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3862 1.2492 7 6 3.6970 2.6911 1.2488 8 8 3.5461 3.4784 0.3388 9 7 4.5398 2.9826 2.2593 10 6 4.7413 2.0443 3.3750 11 6 6.2467 1.8238 3.5610 12 1 6.6468 1.2954 2.6957 13 6 6.4896 0.9943 4.8235 14 8 6.8965 3.0922 3.6889 15 6 6.7561 3.9387 2.5567 16 6 7.5482 5.2491 2.7628 17 6 8.9740 4.8192 2.3244 18 7 8.7581 3.8929 1.1971 19 6 9.6616 3.6178 0.2055 20 1 9.4083 2.9175 -0.5766 21 6 10.9028 4.2392 0.2056 22 7 11.2116 5.0924 1.1591 23 14 12.1355 3.8634 -1.1467 24 1 13.3741 4.6505 -0.9201 25 1 12.4597 2.4143 -1.1322 26 1 11.5524 4.2271 -2.4631 27 6 7.4127 3.3085 1.3184 28 6 5.2881 4.2513 2.2830 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.6143 3.4120 -0.0011 33 1 0.4429 2.4101 -0.8908 34 1 0.4423 2.4105 0.8892 35 1 3.6514 0.5576 -1.2493 36 1 2.3164 1.3284 -2.1393 37 1 3.4878 2.3302 -1.2496 38 1 3.6515 0.5577 1.2492 39 1 2.3165 1.3285 2.1392 40 1 4.3173 2.4639 4.2873 41 1 4.2577 1.0946 3.1464 42 1 5.9907 0.0301 4.7263 43 1 7.5602 0.8383 4.9554 44 1 6.0906 1.5242 5.6885 45 1 7.1622 6.0436 2.1243 46 1 7.5371 5.5518 3.8099 47 1 9.4868 4.3101 3.1405 48 1 9.5475 5.6867 1.9977 49 1 12.0792 5.5263 1.1593 50 1 6.8262 3.5395 0.4292 51 1 7.4871 2.2284 1.4435 52 1 4.8963 4.8940 3.0714 53 1 5.1928 4.7523 1.3197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131661006.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:14 Heat of formation + Delta-G solvation = -22.077857 kcal Electronic energy + Delta-G solvation = -31582.929504 eV Core-core repulsion = 27649.465930 eV Total energy + Delta-G solvation = -3933.463575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.80560 -39.35996 -37.15758 -36.32913 -34.62537 -33.18881 -31.51222 -31.30265 -29.59943 -28.88981 -27.58652 -27.32007 -26.50692 -25.44684 -23.75499 -22.41111 -21.86032 -20.32232 -19.63141 -18.77375 -18.28545 -17.31595 -17.00093 -16.54243 -15.92748 -15.63782 -15.46796 -14.76874 -14.73999 -14.51440 -14.15157 -14.04133 -13.86368 -13.44105 -13.40809 -12.99300 -12.85414 -12.55365 -12.30525 -12.26493 -12.14480 -11.99046 -11.81329 -11.58600 -11.51349 -11.38604 -11.21198 -11.07677 -10.98800 -10.90239 -10.83359 -10.75661 -10.47990 -10.28129 -10.11880 -9.87776 -9.59525 -9.58781 -9.53535 -9.37463 -8.62466 -8.32925 -6.80946 -5.62677 -3.04363 2.06531 2.61673 2.90785 3.42333 3.46206 3.47683 3.83917 4.33346 4.49749 4.59062 4.66340 4.73187 4.82537 4.89463 5.04111 5.08631 5.15898 5.17532 5.23416 5.36017 5.36550 5.47178 5.47678 5.51231 5.57105 5.61205 5.61568 5.70638 5.73887 5.87243 5.89133 5.91660 5.96533 6.02948 6.04089 6.13716 6.27408 6.28582 6.36587 6.38162 6.47540 6.53645 6.54972 6.62057 6.63592 6.71136 7.38276 7.57792 7.63915 7.64867 7.87449 8.19648 8.37897 9.24244 9.84473 10.49646 11.41051 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003383 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.877091 B = 8273.829492 C = 9297.352917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.020 4.020 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.127 4.127 7 C 0.518 3.482 8 O -0.528 6.528 9 N -0.613 5.613 10 C 0.079 3.921 11 C 0.067 3.933 12 H 0.068 0.932 13 C -0.141 4.141 14 O -0.353 6.353 15 C 0.094 3.906 16 C -0.130 4.130 17 C 0.157 3.843 18 N -0.600 5.600 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.286 1.286 26 H -0.285 1.285 27 C 0.123 3.877 28 C 0.099 3.901 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.017 0.983 48 H 0.108 0.892 49 H 0.253 0.747 50 H 0.029 0.971 51 H 0.022 0.978 52 H 0.071 0.929 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.757 -8.723 5.543 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.020 4.020 4 C -0.212 4.212 5 C -0.208 4.208 6 C -0.167 4.167 7 C 0.307 3.693 8 O -0.406 6.406 9 N -0.347 5.347 10 C -0.044 4.044 11 C 0.009 3.991 12 H 0.086 0.914 13 C -0.198 4.198 14 O -0.272 6.272 15 C 0.054 3.946 16 C -0.169 4.169 17 C 0.033 3.967 18 N -0.326 5.326 19 C -0.350 4.350 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.213 1.213 26 H -0.211 1.211 27 C -0.003 4.003 28 C -0.024 4.024 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.035 0.965 48 H 0.125 0.875 49 H 0.063 0.937 50 H 0.047 0.953 51 H 0.040 0.960 52 H 0.089 0.911 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.518 -8.182 5.141 21.779 hybrid contribution 0.489 -0.649 -0.738 1.097 sum -19.028 -8.830 4.404 21.435 Atomic orbital electron populations 1.23999 0.96158 1.01988 1.01405 1.22968 0.95928 0.97658 0.99516 1.19383 0.94899 0.93195 0.94542 1.22176 0.98489 0.99786 1.00733 1.22068 0.99183 1.03913 0.95597 1.21728 0.99092 0.95892 0.99982 1.20585 0.79110 0.88544 0.81051 1.90580 1.64418 1.50797 1.34783 1.48263 1.43707 1.19886 1.22841 1.22510 0.98013 0.93853 0.90049 1.22452 0.90413 0.86703 0.99563 0.91396 1.21690 1.03413 0.98442 0.96281 1.87872 1.74473 1.25976 1.38907 1.22317 0.92518 0.92759 0.87032 1.23035 0.99383 0.93316 1.01171 1.21994 0.90129 0.95902 0.88708 1.44493 1.11320 1.49227 1.27588 1.19011 0.93642 1.20717 1.01670 0.90724 1.24769 0.97632 0.99493 0.98659 1.69778 1.21840 1.31952 1.33473 0.86151 0.80602 0.77535 0.81208 1.21527 1.21271 1.21139 1.21699 0.88510 0.95865 0.94244 1.22241 0.90914 0.85287 1.03942 0.87845 0.88805 0.87508 0.89453 0.92811 0.93377 0.93296 0.93008 0.89259 0.88875 0.89043 0.90590 0.89199 0.91228 0.91156 0.91792 0.90564 0.91085 0.96489 0.87451 0.93664 0.95279 0.95991 0.91099 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 13.70 29.01 0.40 -1.19 16 2 C -0.14 -1.25 8.76 -36.03 -0.32 -1.56 16 3 C -0.02 -0.20 0.74 -155.66 -0.11 -0.32 16 4 C -0.16 -1.66 6.83 37.16 0.25 -1.40 16 5 C -0.15 -1.80 8.16 37.16 0.30 -1.49 16 6 C -0.13 -1.27 3.13 -27.89 -0.09 -1.35 16 7 C 0.52 6.97 7.13 -10.99 -0.08 6.89 16 8 O -0.53 -8.62 10.83 5.56 0.06 -8.56 16 9 N -0.61 -8.24 2.94 -172.59 -0.51 -8.75 16 10 C 0.08 0.85 5.81 -3.53 -0.02 0.83 16 11 C 0.07 0.90 3.17 -26.59 -0.08 0.82 16 12 H 0.07 1.02 6.22 -51.93 -0.32 0.70 16 13 C -0.14 -1.46 9.57 37.16 0.36 -1.11 16 14 O -0.35 -6.15 9.90 -35.23 -0.35 -6.50 16 15 C 0.09 1.72 0.81 -89.71 -0.07 1.65 16 16 C -0.13 -2.52 6.22 -24.76 -0.15 -2.68 16 17 C 0.16 3.92 5.91 -2.32 -0.01 3.90 16 18 N -0.60 -15.85 3.40 -170.09 -0.58 -16.43 16 19 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 20 H 0.07 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.17 10.09 55.49 0.56 -26.61 16 23 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 27 C 0.12 2.70 6.32 -3.32 -0.02 2.68 16 28 C 0.10 1.53 5.20 -3.82 -0.02 1.51 16 29 H 0.10 0.82 5.69 -52.49 -0.30 0.52 16 30 H 0.09 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.09 1.14 5.51 -51.93 -0.29 0.86 16 33 H 0.05 0.54 7.50 -51.93 -0.39 0.15 16 34 H 0.05 0.46 7.50 -51.93 -0.39 0.07 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.31 5.51 -51.93 -0.29 1.02 16 38 H 0.09 0.83 7.67 -51.92 -0.40 0.43 16 39 H 0.09 0.75 8.01 -51.93 -0.42 0.33 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.72 6.05 -51.93 -0.31 0.40 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.41 8.01 -51.93 -0.42 0.99 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.11 2.97 5.86 -51.93 -0.30 2.66 16 49 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.03 0.67 7.62 -51.93 -0.40 0.27 16 51 H 0.02 0.50 6.01 -51.93 -0.31 0.18 16 52 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 53 H 0.10 1.76 6.84 -51.93 -0.36 1.41 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -32.14 394.79 -8.89 -41.03 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -9.08 Total: 2.18 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 0.08 Total: 0.28 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.53 Total: -51.78 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.29 Total: -15.07 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.14 -8.89 -41.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661006.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.952 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds