Wall clock time and date at job start Tue Mar 31 2020 21:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99871 * 2 1 4 4 C 1.52996 * 109.47467 * 359.97438 * 3 2 1 5 5 C 1.53008 * 109.46900 * 239.99947 * 3 2 1 6 6 C 1.52999 * 109.47338 * 120.00051 * 3 2 1 7 7 C 1.50697 * 109.47148 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00288 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99944 * 180.02562 * 7 6 3 10 10 C 1.47166 * 121.07050 * 359.97438 * 9 7 6 11 11 C 1.53281 * 108.55396 * 128.89150 * 10 9 7 12 12 H 1.09002 * 109.50723 * 292.97373 * 11 10 9 13 13 C 1.52998 * 109.51399 * 172.87570 * 11 10 9 14 14 O 1.43093 * 109.22672 * 52.89496 * 11 10 9 15 15 C 1.42064 * 114.33639 * 298.85699 * 14 11 10 16 16 C 1.54493 * 110.39075 * 182.83648 * 15 14 11 17 17 C 1.55239 * 101.44115 * 83.76437 * 16 15 14 18 18 N 1.47485 * 104.78984 * 36.64878 * 17 16 15 19 19 C 1.36945 * 125.66186 * 155.93439 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.69397 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.69302 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47181 * 108.67779 * 335.67125 * 18 17 16 28 28 C 1.47309 * 121.06867 * 180.02562 * 9 7 6 29 29 H 1.07999 * 120.00085 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.00073 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00095 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47460 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47391 * 300.00760 * 4 3 2 34 34 H 1.09006 * 109.47016 * 60.00178 * 4 3 2 35 35 H 1.09006 * 109.47039 * 300.00291 * 5 3 2 36 36 H 1.09002 * 109.46656 * 60.00037 * 5 3 2 37 37 H 1.08996 * 109.47347 * 179.97438 * 5 3 2 38 38 H 1.09008 * 109.47163 * 59.99991 * 6 3 2 39 39 H 1.08993 * 109.47185 * 299.99771 * 6 3 2 40 40 H 1.08996 * 109.62514 * 248.61364 * 10 9 7 41 41 H 1.09004 * 109.62078 * 9.17454 * 10 9 7 42 42 H 1.08999 * 109.46972 * 59.99368 * 13 11 10 43 43 H 1.08992 * 109.47322 * 180.02562 * 13 11 10 44 44 H 1.09001 * 109.46382 * 300.00350 * 13 11 10 45 45 H 1.08996 * 111.01355 * 201.99708 * 16 15 14 46 46 H 1.09005 * 111.00553 * 325.83010 * 16 15 14 47 47 H 1.09004 * 110.48494 * 277.79450 * 17 16 15 48 48 H 1.08996 * 110.33210 * 155.43215 * 17 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.90568 * 121.10492 * 27 18 17 51 51 H 1.08990 * 109.91304 * 242.18491 * 27 18 17 52 52 H 1.09001 * 109.68281 * 109.64594 * 28 9 7 53 53 H 1.09005 * 109.70691 * 349.11680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3862 1.2492 7 6 3.6970 2.6911 1.2488 8 8 3.5461 3.4784 0.3388 9 7 4.5398 2.9826 2.2593 10 6 4.7413 2.0443 3.3750 11 6 6.2467 1.8238 3.5610 12 1 6.6468 1.2954 2.6957 13 6 6.4896 0.9943 4.8235 14 8 6.8965 3.0922 3.6889 15 6 6.7561 3.9387 2.5567 16 6 7.5482 5.2491 2.7628 17 6 8.9740 4.8192 2.3244 18 7 8.7581 3.8929 1.1971 19 6 9.6616 3.6178 0.2055 20 1 9.4083 2.9175 -0.5766 21 6 10.9028 4.2392 0.2056 22 7 11.2116 5.0924 1.1591 23 14 12.1355 3.8634 -1.1467 24 1 13.3741 4.6505 -0.9201 25 1 12.4597 2.4143 -1.1322 26 1 11.5524 4.2271 -2.4631 27 6 7.4127 3.3085 1.3184 28 6 5.2881 4.2513 2.2830 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 1.6143 3.4120 -0.0011 33 1 0.4429 2.4101 -0.8908 34 1 0.4423 2.4105 0.8892 35 1 3.6514 0.5576 -1.2493 36 1 2.3164 1.3284 -2.1393 37 1 3.4878 2.3302 -1.2496 38 1 3.6515 0.5577 1.2492 39 1 2.3165 1.3285 2.1392 40 1 4.3173 2.4639 4.2873 41 1 4.2577 1.0946 3.1464 42 1 5.9907 0.0301 4.7263 43 1 7.5602 0.8383 4.9554 44 1 6.0906 1.5242 5.6885 45 1 7.1622 6.0436 2.1243 46 1 7.5371 5.5518 3.8099 47 1 9.4868 4.3101 3.1405 48 1 9.5475 5.6867 1.9977 49 1 12.0792 5.5263 1.1593 50 1 6.8262 3.5395 0.4292 51 1 7.4871 2.2284 1.4435 52 1 4.8963 4.8940 3.0714 53 1 5.1928 4.7523 1.3197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131661006.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:13 Heat of formation + Delta-G solvation = -41.358999 kcal Electronic energy + Delta-G solvation = -31583.765598 eV Core-core repulsion = 27649.465930 eV Total energy + Delta-G solvation = -3934.299668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.94849 -40.54863 -38.20583 -37.78276 -35.79648 -34.86324 -32.99115 -32.19519 -31.10624 -30.32619 -28.84013 -28.18992 -27.70082 -26.99118 -25.32876 -23.28849 -23.10594 -22.12575 -20.87984 -19.94456 -19.06371 -19.00650 -18.25811 -17.93561 -16.97576 -16.87656 -16.61275 -16.37493 -15.95218 -15.65003 -15.54740 -15.17269 -15.08243 -14.87505 -14.57245 -14.18187 -14.13873 -13.76487 -13.62940 -13.48245 -13.14887 -13.04668 -13.03659 -12.94310 -12.78563 -12.69061 -12.63851 -12.29600 -12.28594 -12.15288 -12.04285 -11.99034 -11.94301 -11.81221 -11.65294 -11.51389 -11.36255 -10.89394 -10.78311 -10.44697 -10.21399 -9.48465 -8.95268 -7.81519 -5.27258 1.42585 1.43610 1.46455 1.53041 1.61415 1.91072 2.45270 2.61029 3.26741 3.40841 3.53854 3.62848 3.77160 3.81525 3.86384 3.95330 3.98890 4.08772 4.11460 4.22480 4.37446 4.39447 4.46008 4.50854 4.54685 4.59749 4.63460 4.67739 4.71143 4.73550 4.80311 4.83505 4.92061 4.97195 4.99002 5.02280 5.05639 5.10907 5.12120 5.18479 5.31015 5.35441 5.38685 5.45368 5.57800 5.59279 5.75536 5.80502 5.98310 6.25058 6.33336 6.38983 7.05621 7.18869 7.71145 8.35849 9.19967 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003383 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.877091 B = 8273.829492 C = 9297.352917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C -0.019 4.019 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.121 4.121 7 C 0.511 3.489 8 O -0.563 6.563 9 N -0.617 5.617 10 C 0.083 3.917 11 C 0.057 3.943 12 H 0.044 0.956 13 C -0.134 4.134 14 O -0.372 6.372 15 C 0.110 3.890 16 C -0.118 4.118 17 C 0.162 3.838 18 N -0.622 5.622 19 C -0.247 4.247 20 H 0.073 0.927 21 C -0.062 4.062 22 N -0.946 5.946 23 Si 0.982 3.018 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.277 1.277 27 C 0.126 3.874 28 C 0.108 3.892 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.094 0.906 47 H -0.013 1.013 48 H 0.077 0.923 49 H 0.250 0.750 50 H 0.015 0.985 51 H 0.017 0.983 52 H 0.093 0.907 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.210 -10.812 6.707 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.168 4.168 3 C -0.019 4.019 4 C -0.208 4.208 5 C -0.206 4.206 6 C -0.160 4.160 7 C 0.301 3.699 8 O -0.443 6.443 9 N -0.350 5.350 10 C -0.039 4.039 11 C -0.001 4.001 12 H 0.062 0.938 13 C -0.191 4.191 14 O -0.291 6.291 15 C 0.069 3.931 16 C -0.157 4.157 17 C 0.037 3.963 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.810 3.190 24 H -0.214 1.214 25 H -0.204 1.204 26 H -0.203 1.203 27 C 0.001 3.999 28 C -0.015 4.015 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.113 0.887 47 H 0.005 0.995 48 H 0.095 0.905 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.035 0.965 52 H 0.111 0.889 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.000 -10.300 6.324 25.101 hybrid contribution 1.248 -0.041 -1.126 1.682 sum -20.752 -10.342 5.197 23.762 Atomic orbital electron populations 1.24154 0.95971 1.02745 0.99869 1.22888 0.96110 0.96965 1.00857 1.19349 0.94674 0.94121 0.93768 1.22107 0.98465 0.98674 1.01538 1.22012 0.99404 1.02183 0.97028 1.21795 0.99317 0.93925 1.01000 1.21309 0.78936 0.89410 0.80207 1.90591 1.65507 1.52171 1.36018 1.48377 1.43326 1.19544 1.23794 1.22694 0.96013 0.95125 0.90019 1.22783 0.92084 0.84969 1.00305 0.93779 1.21709 1.02598 0.99707 0.95091 1.87847 1.75733 1.27586 1.37934 1.22009 0.93753 0.91727 0.85609 1.22886 0.95875 0.94413 1.02544 1.21731 0.93068 0.94116 0.87354 1.44797 1.12576 1.49993 1.27448 1.19353 0.94714 1.21025 1.02488 0.90886 1.25644 0.99382 0.99426 1.01046 1.70032 1.21930 1.32571 1.34947 0.85105 0.77931 0.77530 0.78470 1.21371 1.20413 1.20335 1.21775 0.86720 0.95623 0.95819 1.21937 0.89302 0.86810 1.03484 0.87993 0.87192 0.86280 0.92223 0.92677 0.91870 0.92961 0.92864 0.92497 0.87217 0.86110 0.88345 0.85569 0.87683 0.93273 0.90477 0.89718 0.88732 0.99540 0.90536 0.94061 0.96705 0.96503 0.88865 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 13.70 67.78 0.93 -1.48 16 2 C -0.15 -2.15 8.76 25.65 0.22 -1.93 16 3 C -0.02 -0.35 0.74 -52.93 -0.04 -0.39 16 4 C -0.15 -3.03 6.83 71.98 0.49 -2.53 16 5 C -0.15 -3.51 8.16 71.98 0.59 -2.93 16 6 C -0.12 -2.05 3.13 29.85 0.09 -1.95 16 7 C 0.51 13.08 7.13 87.66 0.62 13.70 16 8 O -0.56 -18.70 10.83 -3.04 -0.03 -18.73 16 9 N -0.62 -15.45 2.94 -818.34 -2.41 -17.85 16 10 C 0.08 1.50 5.81 86.35 0.50 2.00 16 11 C 0.06 1.41 3.17 30.69 0.10 1.51 16 12 H 0.04 1.30 6.22 -2.39 -0.01 1.29 16 13 C -0.13 -2.41 9.57 71.98 0.69 -1.72 16 14 O -0.37 -12.67 9.90 -148.97 -1.48 -14.14 16 15 C 0.11 4.02 0.81 -10.20 -0.01 4.01 16 16 C -0.12 -4.65 6.22 31.87 0.20 -4.46 16 17 C 0.16 8.46 5.91 86.96 0.51 8.97 16 18 N -0.62 -34.34 3.40 -692.05 -2.35 -36.70 16 19 C -0.25 -14.68 10.28 84.03 0.86 -13.82 16 20 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 21 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 22 N -0.95 -57.85 10.09 21.65 0.22 -57.63 16 23 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C 0.13 5.75 6.32 86.48 0.55 6.30 16 28 C 0.11 3.28 5.20 86.08 0.45 3.73 16 29 H 0.10 1.32 5.69 -2.91 -0.02 1.30 16 30 H 0.11 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.06 1.56 5.51 -2.39 -0.01 1.55 16 33 H 0.05 1.05 7.50 -2.39 -0.02 1.03 16 34 H 0.06 1.05 7.50 -2.38 -0.02 1.03 16 35 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.73 5.51 -2.39 -0.01 1.72 16 38 H 0.11 1.53 7.67 -2.38 -0.02 1.51 16 39 H 0.12 1.38 8.01 -2.39 -0.02 1.36 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.13 1.36 6.05 -2.39 -0.01 1.35 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.08 3.16 8.01 -2.39 -0.02 3.14 16 46 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 47 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 48 H 0.08 4.46 5.86 -2.39 -0.01 4.45 16 49 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.02 0.72 7.62 -2.39 -0.02 0.70 16 51 H 0.02 0.79 6.01 -2.39 -0.01 0.78 16 52 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 53 H 0.08 2.84 6.84 -2.38 -0.02 2.82 16 Total: -1.00 -74.89 394.79 4.08 -70.81 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.88 Total: 19.30 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 7.23 Total: 5.81 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.54 Total: -112.17 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.51 Total: -32.88 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -74.89 4.08 -70.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131661006.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.449 kcal (2) G-P(sol) polarization free energy of solvation -74.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds