Wall clock time and date at job start Tue Mar 31 2020 21:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50701 * 120.00287 * 2 1 4 4 C 1.31004 * 119.99995 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00406 * 180.02562 * 4 2 1 6 6 C 1.50701 * 119.99717 * 359.97438 * 4 2 1 7 7 C 1.50701 * 109.46918 * 95.00304 * 6 4 2 8 8 O 1.21278 * 120.00250 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99740 * 180.02562 * 7 6 4 10 10 C 1.47167 * 121.08536 * 0.02562 * 9 7 6 11 11 C 1.53282 * 108.56898 * 231.22406 * 10 9 7 12 12 H 1.09000 * 109.51136 * 66.95792 * 11 10 9 13 13 C 1.52995 * 109.51562 * 187.05945 * 11 10 9 14 14 O 1.43118 * 109.21909 * 306.98680 * 11 10 9 15 15 C 1.41881 * 114.37926 * 60.89274 * 14 11 10 16 16 C 1.54359 * 110.75421 * 176.68951 * 15 14 11 17 17 C 1.54472 * 102.95229 * 276.12132 * 16 15 14 18 18 N 1.47080 * 107.29173 * 338.86241 * 17 16 15 19 19 C 1.36938 * 125.63118 * 178.88568 * 18 17 16 20 20 H 1.07994 * 120.00601 * 185.71733 * 19 18 17 21 21 C 1.38811 * 119.99857 * 5.72768 * 19 18 17 22 22 N 1.31620 * 120.00002 * 353.13892 * 21 19 18 23 23 Si 1.86802 * 120.00224 * 173.41919 * 21 19 18 24 24 H 1.48506 * 109.46878 * 274.73312 * 23 21 19 25 25 H 1.48503 * 109.47205 * 34.72575 * 23 21 19 26 26 H 1.48491 * 109.47373 * 154.73217 * 23 21 19 27 27 C 1.47569 * 108.73954 * 358.62227 * 18 17 16 28 28 C 1.47339 * 121.08016 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46946 * 270.00288 * 1 2 3 30 30 H 1.09007 * 109.47015 * 29.99792 * 1 2 3 31 31 H 1.09000 * 109.47425 * 149.99219 * 1 2 3 32 32 H 1.09004 * 109.47425 * 239.99836 * 3 2 1 33 33 H 1.09001 * 109.47343 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.47234 * 120.00148 * 3 2 1 35 35 H 1.09006 * 109.46288 * 269.99793 * 5 4 2 36 36 H 1.08994 * 109.46927 * 29.99096 * 5 4 2 37 37 H 1.08993 * 109.47550 * 149.99650 * 5 4 2 38 38 H 1.08997 * 109.47350 * 335.00563 * 6 4 2 39 39 H 1.08996 * 109.46948 * 215.00366 * 6 4 2 40 40 H 1.08998 * 109.61974 * 350.94727 * 10 9 7 41 41 H 1.08994 * 109.62149 * 111.49986 * 10 9 7 42 42 H 1.09001 * 109.47073 * 59.99799 * 13 11 10 43 43 H 1.08993 * 109.47481 * 179.97438 * 13 11 10 44 44 H 1.09000 * 109.47043 * 300.00255 * 13 11 10 45 45 H 1.09004 * 110.73395 * 34.66743 * 16 15 14 46 46 H 1.08997 * 110.73779 * 157.79830 * 16 15 14 47 47 H 1.09008 * 109.99156 * 219.37805 * 17 16 15 48 48 H 1.09000 * 109.77328 * 98.22505 * 17 16 15 49 49 H 0.97006 * 120.00087 * 180.02562 * 22 21 19 50 50 H 1.08998 * 110.37604 * 142.38668 * 27 18 17 51 51 H 1.08996 * 110.38057 * 264.62153 * 27 18 17 52 52 H 1.09002 * 109.67719 * 11.11674 * 28 9 7 53 53 H 1.08995 * 109.67662 * 250.57755 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 3.6690 -1.1346 0.0001 6 6 1.4084 -2.4396 -0.0005 7 6 1.2640 -2.9362 -1.4160 8 8 1.7269 -2.2935 -2.3344 9 7 0.6195 -4.0941 -1.6614 10 6 0.0471 -4.8922 -0.5653 11 6 0.5394 -6.3371 -0.7049 12 1 1.6142 -6.3743 -0.5269 13 6 -0.1785 -7.2225 0.3156 14 8 0.2564 -6.8056 -2.0273 15 6 0.8892 -6.0651 -3.0589 16 6 0.5949 -6.6892 -4.4397 17 6 1.6586 -7.8039 -4.5496 18 7 2.7439 -7.4662 -3.6160 19 6 3.8694 -8.2148 -3.3968 20 1 4.5659 -7.9288 -2.6226 21 6 4.1153 -9.3411 -4.1700 22 7 3.2053 -9.7673 -5.0200 23 14 5.7347 -10.2564 -3.9985 24 1 6.7577 -9.6192 -4.8661 25 1 6.1844 -10.2060 -2.5841 26 1 5.5494 -11.6714 -4.4090 27 6 2.4225 -6.1844 -2.9593 28 6 0.4650 -4.6022 -3.0357 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 2.8873 1.3628 -0.8900 33 1 1.5523 2.1336 0.0005 34 1 2.8872 1.3628 0.8900 35 1 4.0326 -1.1340 -1.0276 36 1 4.0321 -0.2450 0.5145 37 1 4.0321 -2.0249 0.5135 38 1 0.4203 -2.2886 0.4341 39 1 1.9559 -3.1753 0.5886 40 1 0.3725 -4.4855 0.3921 41 1 -1.0409 -4.8689 -0.6251 42 1 -1.2530 -7.1862 0.1359 43 1 0.1717 -8.2498 0.2155 44 1 0.0339 -6.8623 1.3222 45 1 -0.4110 -7.1083 -4.4673 46 1 0.7263 -5.9525 -5.2322 47 1 2.0463 -7.8502 -5.5674 48 1 1.2182 -8.7624 -4.2748 49 1 3.3770 -10.5547 -5.5601 50 1 2.7345 -6.2043 -1.9151 51 1 2.9040 -5.3585 -3.4827 52 1 1.0958 -4.0265 -3.7130 53 1 -0.5773 -4.5176 -3.3433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131673277.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:21 Heat of formation + Delta-G solvation = -58.421261 kcal Electronic energy + Delta-G solvation = -31350.166235 eV Core-core repulsion = 27415.126692 eV Total energy + Delta-G solvation = -3935.039543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.86176 -40.27488 -38.10818 -37.80691 -35.76966 -34.87850 -32.99397 -32.11206 -31.14379 -30.69752 -29.66268 -27.93173 -27.50514 -26.90842 -25.48464 -24.40645 -23.17328 -22.00527 -21.07714 -20.08984 -18.99844 -18.29482 -18.12135 -17.64519 -16.96390 -16.83297 -16.66722 -16.17408 -15.67676 -15.60161 -15.47808 -15.26507 -15.08262 -14.97293 -14.42663 -14.15853 -13.99105 -13.73710 -13.59590 -13.57533 -13.20290 -13.14149 -13.10279 -13.00220 -12.95962 -12.88206 -12.81695 -12.68934 -12.56926 -12.23599 -12.14343 -12.09124 -12.03847 -12.00549 -11.71316 -11.58085 -11.52709 -10.94517 -10.81533 -10.71475 -9.52675 -9.35179 -8.93053 -7.89613 -5.24618 1.14073 1.41474 1.44999 1.52644 1.60360 1.96764 2.45326 2.63145 3.28176 3.42907 3.59764 3.64157 3.74797 3.78608 3.90746 3.98395 4.05394 4.08563 4.20234 4.21413 4.37181 4.38678 4.47983 4.52815 4.55452 4.61468 4.63699 4.66717 4.69403 4.73710 4.78780 4.79453 4.85167 4.90906 4.93685 5.02223 5.03457 5.05238 5.09421 5.11529 5.15783 5.20067 5.29780 5.36042 5.37993 5.60753 5.70964 5.77073 6.10330 6.14432 6.34819 6.38283 7.05491 7.13810 7.71213 8.37118 9.21244 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.003198 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.212239 B = 8752.584302 C = 9480.332918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.139 4.139 5 C -0.114 4.114 6 C -0.098 4.098 7 C 0.515 3.485 8 O -0.575 6.575 9 N -0.617 5.617 10 C 0.084 3.916 11 C 0.059 3.941 12 H 0.042 0.958 13 C -0.134 4.134 14 O -0.368 6.368 15 C 0.108 3.892 16 C -0.119 4.119 17 C 0.191 3.809 18 N -0.619 5.619 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.061 4.061 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.285 1.285 25 H -0.269 1.269 26 H -0.290 1.290 27 C 0.123 3.877 28 C 0.107 3.893 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.012 0.988 48 H 0.009 0.991 49 H 0.249 0.751 50 H 0.035 0.965 51 H 0.012 0.988 52 H 0.083 0.917 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 18.163 15.986 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.130 4.130 3 C -0.170 4.170 4 C -0.139 4.139 5 C -0.170 4.170 6 C -0.137 4.137 7 C 0.305 3.695 8 O -0.454 6.454 9 N -0.350 5.350 10 C -0.038 4.038 11 C 0.001 3.999 12 H 0.060 0.940 13 C -0.191 4.191 14 O -0.288 6.288 15 C 0.067 3.933 16 C -0.157 4.157 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.377 4.377 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.194 1.194 26 H -0.217 1.217 27 C -0.003 4.003 28 C -0.016 4.016 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.030 0.970 52 H 0.101 0.899 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.221 18.168 15.410 25.923 hybrid contribution 1.421 -0.925 -0.676 1.825 sum -8.800 17.242 14.734 24.328 Atomic orbital electron populations 1.20905 0.91465 1.02229 1.02823 1.21683 0.96455 0.94917 0.99935 1.20818 0.99986 0.94294 1.01932 1.20928 0.95645 0.93317 1.04020 1.20780 0.92324 1.02878 1.01045 1.20849 1.03889 0.96802 0.92197 1.21267 0.76147 0.79623 0.92454 1.90678 1.49311 1.57403 1.48044 1.48356 1.56473 1.22432 1.07769 1.22709 1.00276 0.89902 0.90939 1.22746 0.99110 0.94470 0.83562 0.93985 1.21699 1.01195 0.98695 0.97505 1.87818 1.70139 1.56410 1.14394 1.22040 0.91222 0.90743 0.89317 1.22722 1.00372 0.98654 0.93983 1.20882 0.86473 0.93925 0.92062 1.44704 1.21179 1.21012 1.47663 1.19350 0.98031 1.05790 1.14498 0.90718 1.25671 1.01649 0.99520 0.98644 1.70194 1.34348 1.26002 1.28943 0.85101 0.79079 0.77164 0.78019 1.21161 1.19439 1.21664 1.21996 0.94703 0.87953 0.95615 1.21887 1.02793 0.92299 0.84659 0.89434 0.91570 0.92887 0.92668 0.91084 0.90436 0.93653 0.90272 0.91953 0.85469 0.86856 0.85570 0.88170 0.90449 0.93590 0.87654 0.88888 0.89064 0.97004 0.97249 0.94218 0.94732 0.97009 0.89902 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 9.07 71.23 0.65 -1.06 16 2 C -0.13 -2.35 6.05 -16.49 -0.10 -2.45 16 3 C -0.11 -1.73 8.76 71.24 0.62 -1.11 16 4 C -0.14 -2.81 4.55 -16.49 -0.07 -2.89 16 5 C -0.11 -2.34 9.54 71.24 0.68 -1.66 16 6 C -0.10 -1.78 3.57 29.10 0.10 -1.68 16 7 C 0.51 13.86 7.49 87.66 0.66 14.51 16 8 O -0.58 -20.61 15.52 -3.02 -0.05 -20.66 16 9 N -0.62 -15.75 2.96 -818.71 -2.42 -18.17 16 10 C 0.08 1.55 5.81 86.35 0.50 2.05 16 11 C 0.06 1.55 3.20 30.69 0.10 1.65 16 12 H 0.04 1.31 6.26 -2.39 -0.01 1.30 16 13 C -0.13 -2.63 9.57 71.98 0.69 -1.94 16 14 O -0.37 -13.03 9.92 -148.95 -1.48 -14.50 16 15 C 0.11 3.96 0.83 -10.17 -0.01 3.95 16 16 C -0.12 -4.61 6.12 31.56 0.19 -4.42 16 17 C 0.19 10.05 5.39 86.77 0.47 10.52 16 18 N -0.62 -34.14 3.40 -692.75 -2.36 -36.50 16 19 C -0.25 -14.73 10.27 84.03 0.86 -13.87 16 20 H 0.07 4.30 7.84 -2.91 -0.02 4.27 16 21 C -0.06 -3.64 5.48 84.86 0.47 -3.18 16 22 N -0.95 -58.89 10.36 21.65 0.22 -58.67 16 23 Si 0.98 47.34 29.56 68.60 2.03 49.37 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 27 C 0.12 5.57 6.18 86.55 0.53 6.11 16 28 C 0.11 3.23 5.29 86.00 0.46 3.68 16 29 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.91 8.05 -2.38 -0.02 0.89 16 31 H 0.05 0.86 6.27 -2.39 -0.01 0.85 16 32 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.07 0.88 7.94 -2.39 -0.02 0.86 16 34 H 0.08 0.97 7.36 -2.39 -0.02 0.96 16 35 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 1.31 6.44 -2.39 -0.02 1.29 16 37 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.13 1.56 6.12 -2.39 -0.01 1.54 16 39 H 0.11 1.69 7.63 -2.39 -0.02 1.67 16 40 H 0.13 1.42 6.05 -2.39 -0.01 1.41 16 41 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 46 H 0.09 3.18 7.99 -2.39 -0.02 3.16 16 47 H 0.01 0.69 7.38 -2.38 -0.02 0.67 16 48 H 0.01 0.55 7.53 -2.39 -0.02 0.53 16 49 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 50 H 0.03 1.57 6.09 -2.39 -0.01 1.55 16 51 H 0.01 0.58 7.82 -2.39 -0.02 0.56 16 52 H 0.08 2.83 6.86 -2.39 -0.02 2.82 16 53 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -78.83 403.45 3.63 -75.20 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.88 Total: 15.71 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.79 Total: 8.21 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.55 Total: -113.34 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.52 Total: -35.16 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -78.83 3.63 -75.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673277.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.782 kcal (2) G-P(sol) polarization free energy of solvation -78.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds