Wall clock time and date at job start Tue Mar 31 2020 21:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50705 * 119.99976 * 2 1 4 4 C 1.31006 * 120.00062 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00048 * 354.24430 * 4 2 1 6 6 C 1.50697 * 119.99605 * 174.24432 * 4 2 1 7 7 C 1.50702 * 109.47019 * 94.53773 * 6 4 2 8 8 O 1.21279 * 120.00404 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99829 * 179.97438 * 7 6 4 10 10 C 1.47158 * 121.07474 * 359.71738 * 9 7 6 11 11 C 1.52864 * 108.75511 * 231.25481 * 10 9 7 12 12 H 1.09000 * 109.36689 * 67.05519 * 11 10 9 13 13 C 1.53001 * 109.58307 * 187.15608 * 11 10 9 14 14 O 1.43110 * 109.30102 * 307.17145 * 11 10 9 15 15 C 1.41883 * 114.43169 * 60.74000 * 14 11 10 16 16 C 1.54354 * 110.75659 * 63.55901 * 15 14 11 17 17 C 1.54459 * 102.88269 * 83.66817 * 16 15 14 18 18 N 1.47079 * 107.29771 * 21.48972 * 17 16 15 19 19 C 1.36931 * 125.63386 * 180.99855 * 18 17 16 20 20 H 1.08000 * 120.00234 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99860 * 359.97438 * 19 18 17 22 22 N 1.31619 * 119.99755 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47255 * 60.00298 * 23 21 19 25 25 H 1.48506 * 109.46905 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47251 * 300.00133 * 23 21 19 27 27 C 1.47573 * 108.73761 * 0.99670 * 18 17 16 28 28 C 1.47321 * 121.07081 * 180.02562 * 9 7 6 29 29 H 1.08997 * 109.47104 * 270.00110 * 1 2 3 30 30 H 1.08993 * 109.47121 * 30.00714 * 1 2 3 31 31 H 1.09004 * 109.46654 * 149.99910 * 1 2 3 32 32 H 1.08991 * 109.46875 * 245.06952 * 3 2 1 33 33 H 1.09000 * 109.46980 * 5.06774 * 3 2 1 34 34 H 1.09005 * 109.46970 * 125.07009 * 3 2 1 35 35 H 1.09004 * 109.46720 * 89.99961 * 5 4 2 36 36 H 1.09001 * 109.46924 * 330.00367 * 5 4 2 37 37 H 1.08996 * 109.47050 * 209.99757 * 5 4 2 38 38 H 1.09000 * 109.47248 * 214.53231 * 6 4 2 39 39 H 1.08997 * 109.47429 * 334.53350 * 6 4 2 40 40 H 1.08996 * 109.63144 * 351.01885 * 10 9 7 41 41 H 1.09002 * 109.63251 * 111.60031 * 10 9 7 42 42 H 1.08996 * 109.47125 * 179.87848 * 13 11 10 43 43 H 1.08999 * 109.47434 * 299.88411 * 13 11 10 44 44 H 1.09008 * 109.46577 * 59.88434 * 13 11 10 45 45 H 1.09004 * 110.72939 * 202.01549 * 16 15 14 46 46 H 1.09003 * 110.72953 * 325.31365 * 16 15 14 47 47 H 1.09006 * 109.87593 * 262.06486 * 17 16 15 48 48 H 1.09003 * 110.00234 * 140.98538 * 17 16 15 49 49 H 0.96997 * 119.99788 * 179.97438 * 22 21 19 50 50 H 1.09000 * 110.37855 * 217.85434 * 27 18 17 51 51 H 1.09004 * 110.37293 * 95.51041 * 27 18 17 52 52 H 1.08999 * 109.63778 * 250.53759 * 28 9 7 53 53 H 1.08998 * 109.64024 * 10.94735 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4143 -2.4363 0.1320 6 6 3.6633 -1.1378 -0.1304 7 6 4.2870 -1.1795 1.2409 8 8 3.5819 -1.2036 2.2274 9 7 5.6285 -1.1899 1.3710 10 6 6.5064 -1.1673 0.1902 11 6 7.5204 -2.3049 0.3098 12 1 7.0019 -3.2607 0.2343 13 6 8.5525 -2.1921 -0.8140 14 8 8.1812 -2.2183 1.5762 15 6 7.3185 -2.3293 2.6972 16 6 6.6486 -3.7194 2.7363 17 6 7.7153 -4.5964 3.4282 18 7 8.6001 -3.6955 4.1823 19 6 9.6879 -4.0791 4.9203 20 1 10.2763 -3.3377 5.4404 21 6 10.0336 -5.4211 5.0008 22 7 9.3162 -6.3246 4.3674 23 14 11.5171 -5.9445 6.0081 24 1 11.3228 -5.5387 7.4232 25 1 11.6713 -7.4196 5.9324 26 1 12.7370 -5.2915 5.4689 27 6 8.1220 -2.3097 4.0123 28 6 6.2632 -1.2310 2.6999 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 2.8173 1.4032 -0.9318 33 1 1.5557 2.1316 0.0908 34 1 2.9536 1.3245 0.8411 35 1 1.1447 -2.8021 -0.8589 36 1 0.5098 -2.2780 0.7193 37 1 2.0474 -3.1702 0.6304 38 1 3.9766 -2.0135 -0.6987 39 1 3.9848 -0.2343 -0.6485 40 1 5.9101 -1.3034 -0.7120 41 1 7.0334 -0.2143 0.1438 42 1 9.2758 -3.0028 -0.7257 43 1 8.0486 -2.2582 -1.7782 44 1 9.0686 -1.2349 -0.7385 45 1 5.7321 -3.6895 3.3256 46 1 6.4482 -4.0796 1.7272 47 1 8.2911 -5.1399 2.6791 48 1 7.2354 -5.2998 4.1088 49 1 9.5580 -7.2623 4.4234 50 1 8.9657 -1.6243 3.9315 51 1 7.4793 -2.0251 4.8454 52 1 6.7345 -0.2710 2.9106 53 1 5.5105 -1.4439 3.4589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131673279.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:29 Heat of formation + Delta-G solvation = -58.359988 kcal Electronic energy + Delta-G solvation = -31198.527451 eV Core-core repulsion = 27263.490565 eV Total energy + Delta-G solvation = -3935.036886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86941 -40.26980 -38.11898 -37.81513 -35.76530 -34.80439 -32.97565 -32.11357 -31.14942 -30.64897 -29.81504 -27.93194 -27.48106 -26.80819 -25.48093 -24.39646 -23.13315 -22.05573 -21.06815 -20.12098 -18.97162 -18.30370 -18.10626 -17.62928 -16.93702 -16.82732 -16.62332 -16.13663 -15.70771 -15.55776 -15.49768 -15.18472 -15.06442 -14.94215 -14.38661 -14.16375 -14.05463 -13.76613 -13.61808 -13.58665 -13.19335 -13.12722 -13.09607 -13.01614 -12.95253 -12.84346 -12.80631 -12.73727 -12.62326 -12.25617 -12.12079 -12.08257 -12.04723 -11.86559 -11.73840 -11.60674 -11.48826 -10.92773 -10.81035 -10.70924 -9.52482 -9.33119 -8.92967 -7.85531 -5.21564 1.14727 1.44435 1.48901 1.54830 1.61145 1.95417 2.48523 2.62328 3.32608 3.43053 3.57924 3.63954 3.77890 3.84785 3.92402 3.93989 4.02834 4.09099 4.21661 4.23001 4.37148 4.39272 4.44626 4.48149 4.54623 4.62003 4.62900 4.71911 4.72693 4.74566 4.76881 4.82925 4.84346 4.88465 4.93782 5.00558 5.04845 5.05975 5.11642 5.12252 5.15554 5.22103 5.28884 5.35990 5.41342 5.56090 5.68536 5.77338 6.11404 6.15772 6.36006 6.40735 7.07343 7.14533 7.73871 8.39104 9.25268 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020388 B = 0.002798 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.021855 B =10004.647145 C =10468.285761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.132 4.132 3 C -0.115 4.115 4 C -0.136 4.136 5 C -0.110 4.110 6 C -0.098 4.098 7 C 0.516 3.484 8 O -0.575 6.575 9 N -0.614 5.614 10 C 0.083 3.917 11 C 0.057 3.943 12 H 0.052 0.948 13 C -0.135 4.135 14 O -0.371 6.371 15 C 0.111 3.889 16 C -0.148 4.148 17 C 0.199 3.801 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.145 3.855 28 C 0.107 3.893 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.008 0.992 48 H 0.003 0.997 49 H 0.246 0.754 50 H 0.053 0.947 51 H 0.046 0.954 52 H 0.086 0.914 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 15.387 -17.414 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.172 4.172 4 C -0.137 4.137 5 C -0.167 4.167 6 C -0.137 4.137 7 C 0.306 3.694 8 O -0.454 6.454 9 N -0.348 5.348 10 C -0.039 4.039 11 C -0.001 4.001 12 H 0.069 0.931 13 C -0.192 4.192 14 O -0.290 6.290 15 C 0.069 3.931 16 C -0.186 4.186 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.020 3.980 28 C -0.016 4.016 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.027 0.973 48 H 0.022 0.978 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.104 0.896 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.882 15.230 -16.824 26.603 hybrid contribution 0.732 -1.099 1.095 1.715 sum -13.150 14.131 -15.730 24.900 Atomic orbital electron populations 1.20871 0.91356 1.03183 1.01820 1.21671 0.96582 0.94722 1.00270 1.20831 0.99923 0.94652 1.01785 1.20958 0.93484 0.95570 1.03672 1.20744 0.99472 0.94460 1.01990 1.20823 0.93248 1.06615 0.92993 1.21279 0.80888 0.74662 0.92535 1.90686 1.61676 1.51175 1.41878 1.48318 1.05794 1.73398 1.07266 1.22623 0.92718 1.00063 0.88538 1.22715 0.94927 0.97738 0.84679 0.93050 1.21714 0.98193 1.03031 0.96299 1.87876 1.34345 1.93357 1.13447 1.22033 0.90033 0.93259 0.87737 1.23139 0.98032 0.96750 1.00696 1.20748 0.88942 0.90562 0.92375 1.44698 1.30825 1.01866 1.57301 1.19444 1.03071 0.92321 1.22173 0.89740 1.25704 1.02425 0.95866 1.02135 1.70200 1.41806 1.00355 1.47937 0.85092 0.78952 0.76432 0.78491 1.20149 1.22057 1.20156 1.21537 0.96533 0.87352 0.92622 1.21802 0.94930 0.98723 0.86176 0.92269 0.90638 0.91085 0.89781 0.91187 0.93608 0.90005 0.92048 0.93695 0.86463 0.85773 0.85292 0.88704 0.93467 0.87407 0.90937 0.91681 0.90790 0.97343 0.97848 0.94468 0.92886 0.93647 0.89559 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 8.95 71.24 0.64 -1.02 16 2 C -0.13 -2.30 6.04 -16.49 -0.10 -2.40 16 3 C -0.12 -1.70 8.73 71.24 0.62 -1.07 16 4 C -0.14 -2.57 4.54 -16.49 -0.07 -2.65 16 5 C -0.11 -2.05 9.03 71.24 0.64 -1.41 16 6 C -0.10 -1.62 3.71 29.10 0.11 -1.51 16 7 C 0.52 13.12 7.56 87.66 0.66 13.78 16 8 O -0.58 -19.76 15.52 -3.03 -0.05 -19.81 16 9 N -0.61 -15.03 2.96 -819.59 -2.43 -17.45 16 10 C 0.08 1.45 5.79 86.21 0.50 1.95 16 11 C 0.06 1.41 3.19 30.55 0.10 1.51 16 12 H 0.05 1.39 6.25 -2.39 -0.01 1.38 16 13 C -0.13 -2.55 9.57 71.98 0.69 -1.86 16 14 O -0.37 -13.15 9.92 -148.95 -1.48 -14.63 16 15 C 0.11 4.05 0.84 -10.18 -0.01 4.04 16 16 C -0.15 -6.04 5.88 31.55 0.19 -5.86 16 17 C 0.20 10.61 5.39 86.76 0.47 11.07 16 18 N -0.62 -33.81 3.40 -692.73 -2.36 -36.16 16 19 C -0.24 -14.12 10.28 84.04 0.86 -13.25 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.65 16 21 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 22 N -0.95 -59.79 10.31 21.65 0.22 -59.56 16 23 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 C 0.15 6.28 6.42 86.56 0.56 6.84 16 28 C 0.11 3.23 5.29 86.00 0.46 3.69 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.07 0.91 6.83 -2.39 -0.02 0.89 16 32 H 0.08 0.88 7.45 -2.39 -0.02 0.86 16 33 H 0.07 0.88 7.98 -2.39 -0.02 0.86 16 34 H 0.05 0.86 7.88 -2.38 -0.02 0.84 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.16 6.83 -2.39 -0.02 1.14 16 37 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.12 1.49 7.66 -2.39 -0.02 1.47 16 39 H 0.12 1.39 6.32 -2.39 -0.02 1.37 16 40 H 0.13 1.27 6.05 -2.39 -0.01 1.25 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.06 2.64 7.82 -2.38 -0.02 2.62 16 46 H 0.07 2.80 6.10 -2.39 -0.01 2.79 16 47 H 0.01 0.50 7.39 -2.38 -0.02 0.48 16 48 H 0.00 0.20 7.49 -2.39 -0.02 0.18 16 49 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 50 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.05 1.88 7.99 -2.39 -0.02 1.86 16 52 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 53 H 0.08 2.87 6.86 -2.39 -0.02 2.85 16 Total: -1.00 -78.16 404.04 3.59 -74.57 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.88 Total: 15.50 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.77 Total: 8.25 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.56 Total: -113.17 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.52 Total: -34.43 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -78.16 3.59 -74.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673279.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.214 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds